Wall clock time and date at job start Tue Mar 31 2020 23:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46962 * 2 1 4 4 N 1.46894 * 109.47227 * 239.99581 * 2 1 3 5 5 C 1.46906 * 110.99688 * 85.00015 * 4 2 1 6 6 C 1.53003 * 109.46850 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.49995 * 304.92123 * 6 5 4 8 8 C 1.53030 * 109.50395 * 65.00296 * 6 5 4 9 9 N 1.46847 * 109.52282 * 179.12159 * 8 6 5 10 10 C 1.46845 * 111.19418 * 298.25449 * 9 8 6 11 11 C 1.53033 * 109.52431 * 61.74455 * 10 9 8 12 12 C 1.53120 * 109.49880 * 184.80506 * 6 5 4 13 13 F 1.39897 * 109.52203 * 302.30906 * 12 6 5 14 14 F 1.39899 * 109.52507 * 62.49955 * 12 6 5 15 15 C 1.50706 * 109.46977 * 119.99690 * 2 1 3 16 16 C 1.38303 * 119.93034 * 260.00094 * 15 2 1 17 17 C 1.38099 * 120.06408 * 180.02562 * 16 15 2 18 18 C 1.38873 * 119.93656 * 359.97438 * 17 16 15 19 19 O 1.35754 * 120.07268 * 180.02562 * 18 17 16 20 20 C 1.34829 * 116.99935 * 354.46689 * 19 18 17 21 21 H 1.07998 * 119.99409 * 5.05327 * 20 19 18 22 22 C 1.38651 * 120.00088 * 185.05715 * 20 19 18 23 23 N 1.31562 * 119.99726 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00090 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47540 * 89.99997 * 24 22 20 26 26 H 1.48502 * 109.47382 * 209.99555 * 24 22 20 27 27 H 1.48502 * 109.47113 * 329.99712 * 24 22 20 28 28 C 1.38882 * 119.85929 * 0.28297 * 18 17 16 29 29 C 1.38105 * 119.92822 * 359.41605 * 28 18 17 30 30 H 1.09001 * 109.47078 * 59.99728 * 1 2 3 31 31 H 1.09000 * 109.47421 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46838 * 299.99986 * 1 2 3 33 33 H 1.00902 * 111.00090 * 321.04730 * 4 2 1 34 34 H 1.08995 * 109.47020 * 300.00393 * 5 4 2 35 35 H 1.08998 * 109.46737 * 60.00059 * 5 4 2 36 36 H 1.09005 * 109.46046 * 299.13193 * 8 6 5 37 37 H 1.09003 * 109.46720 * 59.10199 * 8 6 5 38 38 H 1.00897 * 111.00279 * 62.35101 * 9 8 6 39 39 H 1.09006 * 109.46208 * 181.76145 * 10 9 8 40 40 H 1.08996 * 109.46691 * 301.73197 * 10 9 8 41 41 H 1.09002 * 109.50608 * 60.76033 * 11 10 9 42 42 H 1.09003 * 109.50438 * 180.83751 * 11 10 9 43 43 H 1.07996 * 119.96532 * 0.02562 * 16 15 2 44 44 H 1.08006 * 120.03112 * 180.02562 * 17 16 15 45 45 H 0.97003 * 119.99701 * 179.97438 * 23 22 20 46 46 H 1.08005 * 120.03715 * 179.72094 * 28 18 17 47 47 H 1.08002 * 119.95910 * 180.27378 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3468 6 6 2.5951 -0.5333 -3.5744 7 1 3.5514 -1.0012 -3.3405 8 6 1.5827 -1.6102 -3.9708 9 7 2.0643 -2.3220 -5.1616 10 6 2.1993 -1.4117 -6.3059 11 6 3.2301 -0.3288 -5.9791 12 6 2.7747 0.4448 -4.7387 13 9 1.5584 1.0823 -5.0056 14 9 3.7404 1.3996 -4.4025 15 6 2.0323 -0.7104 1.2306 16 6 2.4585 0.0213 2.3241 17 6 2.9199 -0.6268 3.4529 18 6 2.9550 -2.0146 3.4896 19 8 3.4075 -2.6545 4.5980 20 6 3.9148 -1.8871 5.5837 21 1 3.8733 -0.8107 5.5055 22 6 4.4900 -2.4797 6.6974 23 7 4.5402 -3.7909 6.7927 24 14 5.1922 -1.4164 8.0633 25 1 4.1338 -1.1367 9.0668 26 1 6.3180 -2.1305 8.7174 27 1 5.6830 -0.1367 7.4917 28 6 2.5314 -2.7464 2.3879 29 6 2.0653 -2.0925 1.2642 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.4496 -1.4980 -1.4099 34 1 1.0871 0.6163 -2.5524 35 1 2.7588 1.0461 -2.1181 36 1 1.4632 -2.3165 -3.1492 37 1 0.6226 -1.1431 -4.1905 38 1 2.9346 -2.7961 -4.9721 39 1 2.5276 -1.9737 -7.1803 40 1 1.2365 -0.9454 -6.5146 41 1 4.1966 -0.7934 -5.7838 42 1 3.3191 0.3554 -6.8230 43 1 2.4305 1.1005 2.2951 44 1 3.2522 -0.0549 4.3067 45 1 4.9429 -4.2055 7.5717 46 1 2.5617 -3.8257 2.4116 47 1 1.7315 -2.6612 0.4089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925786162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:04 Heat of formation + Delta-G solvation = -107.075085 kcal Electronic energy + Delta-G solvation = -29523.212996 eV Core-core repulsion = 25148.687003 eV Total energy + Delta-G solvation = -4374.525993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.33994 -47.30475 -39.35108 -38.86191 -37.48906 -35.74517 -33.02664 -32.14534 -31.43079 -30.20160 -29.50348 -27.87661 -25.58295 -25.35916 -24.13054 -22.75788 -22.31352 -21.58585 -20.84827 -20.05448 -17.92075 -17.84124 -17.49668 -16.99129 -16.84984 -15.98178 -15.60457 -15.32084 -14.93195 -14.58314 -14.50136 -14.31369 -14.11475 -14.01738 -13.75856 -13.61891 -13.55495 -13.40157 -13.08116 -12.87526 -12.75426 -12.75060 -12.63988 -12.41498 -12.23138 -11.96335 -11.68038 -11.64607 -11.57229 -11.32625 -11.15975 -10.85974 -10.65964 -10.58407 -10.40087 -10.36047 -9.29633 -9.04160 -8.80303 -8.46404 -8.12162 -7.11850 -6.42387 -4.01101 2.26893 2.35852 3.13804 3.15035 3.19758 3.23839 3.57575 3.63861 3.87575 3.98156 3.98872 4.23256 4.30681 4.58962 4.67572 4.78326 4.84569 4.95184 4.96963 5.05772 5.10940 5.16171 5.21246 5.27342 5.35205 5.39004 5.41076 5.46440 5.57171 5.65175 5.69951 5.77723 5.87292 5.97097 6.14084 6.25912 6.38587 6.44890 6.74319 6.80264 6.83826 6.99254 7.10645 7.29693 7.32788 7.44884 7.48679 7.87019 8.02947 9.03522 9.74656 10.75839 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.002032 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.642970 B =13775.587460 C =13917.520673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.142 3.858 3 H 0.076 0.924 4 N -0.675 5.675 5 C 0.065 3.935 6 C -0.162 4.162 7 H 0.110 0.890 8 C 0.061 3.939 9 N -0.681 5.681 10 C 0.058 3.942 11 C -0.198 4.198 12 C 0.294 3.706 13 F -0.198 7.198 14 F -0.198 7.198 15 C -0.167 4.167 16 C -0.068 4.068 17 C -0.233 4.233 18 C 0.153 3.847 19 O -0.180 6.180 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.864 5.864 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.194 4.194 29 C -0.053 4.053 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.338 0.662 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.348 0.652 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.269 0.731 46 H 0.115 0.885 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 6.835 -24.716 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.032 3.968 3 H 0.094 0.906 4 N -0.306 5.306 5 C -0.065 4.065 6 C -0.184 4.184 7 H 0.129 0.871 8 C -0.069 4.069 9 N -0.309 5.309 10 C -0.072 4.072 11 C -0.238 4.238 12 C 0.257 3.743 13 F -0.179 7.179 14 F -0.179 7.179 15 C -0.168 4.168 16 C -0.086 4.086 17 C -0.252 4.252 18 C 0.100 3.900 19 O -0.083 6.083 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.499 5.499 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.213 4.213 29 C -0.072 4.072 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.166 0.834 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.143 0.857 45 H 0.079 0.921 46 H 0.133 0.867 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.369 6.298 -24.507 25.867 hybrid contribution 0.354 1.522 0.798 1.755 sum -5.015 7.820 -23.709 25.464 Atomic orbital electron populations 1.22498 0.97099 1.02238 1.01690 1.20187 0.91925 0.96769 0.87880 0.90599 1.60630 1.57980 1.09199 1.02822 1.21862 0.99934 0.95521 0.89224 1.22973 1.04160 0.97276 0.93955 0.87143 1.22174 0.97165 0.94433 0.93144 1.60564 1.36056 1.29073 1.05220 1.22071 0.98456 0.92006 0.94676 1.23329 1.02511 1.00785 0.97201 1.21056 0.73612 0.83418 0.96219 1.92989 1.45836 1.84052 1.95014 1.93026 1.63827 1.67384 1.93683 1.19035 1.09286 0.93538 0.94977 1.20538 0.97210 0.98080 0.92807 1.21106 1.09646 0.94425 1.00029 1.19389 0.92128 0.90913 0.87604 1.83979 1.67489 1.35027 1.21849 1.21309 1.37918 0.90675 0.96795 0.89149 1.25276 0.96812 0.96309 0.98174 1.70043 1.41864 1.08701 1.29312 0.85725 0.78665 0.79106 0.80004 1.19927 1.20278 1.19238 1.20206 1.08868 0.99316 0.92937 1.20285 0.97668 0.93330 0.95890 0.93368 0.92265 0.91711 0.84207 0.94401 0.90295 0.88713 0.90034 0.83393 0.89120 0.89850 0.88618 0.88879 0.87832 0.85695 0.92085 0.86715 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 2 C 0.14 1.81 2.79 -68.87 -0.19 1.61 16 3 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16 4 N -0.68 -7.50 5.70 -107.95 -0.62 -8.12 16 5 C 0.06 0.64 4.69 -3.82 -0.02 0.62 16 6 C -0.16 -1.32 2.18 -90.54 -0.20 -1.52 16 7 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 8 C 0.06 0.43 5.48 -3.84 -0.02 0.41 16 9 N -0.68 -4.30 6.87 -113.82 -0.78 -5.09 16 10 C 0.06 0.32 6.44 -3.84 -0.02 0.29 16 11 C -0.20 -1.19 5.60 -26.65 -0.15 -1.34 16 12 C 0.29 2.54 1.65 -26.61 -0.04 2.49 16 13 F -0.20 -1.98 15.71 2.25 0.04 -1.94 16 14 F -0.20 -2.16 16.58 2.25 0.04 -2.12 16 15 C -0.17 -2.76 4.96 -104.57 -0.52 -3.28 16 16 C -0.07 -1.23 9.66 -39.61 -0.38 -1.62 16 17 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 18 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 19 O -0.18 -5.17 9.76 0.04 0.00 -5.17 16 20 C -0.39 -11.00 9.49 30.88 0.29 -10.71 16 21 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 22 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 23 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 24 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 28 C -0.19 -4.09 9.99 -39.39 -0.39 -4.48 16 29 C -0.05 -0.92 9.31 -39.61 -0.37 -1.29 16 30 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.34 3.33 6.09 -39.29 -0.24 3.09 16 34 H 0.04 0.37 7.19 -51.93 -0.37 0.00 16 35 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 36 H 0.09 0.66 6.72 -51.93 -0.35 0.31 16 37 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 38 H 0.35 1.86 8.86 -39.29 -0.35 1.51 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 1.63 8.03 -52.49 -0.42 1.20 16 44 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.11 2.35 8.06 -52.48 -0.42 1.92 16 47 H 0.11 1.56 7.24 -52.49 -0.38 1.18 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -31.19 380.56 -9.02 -40.21 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.77 Total: 7.03 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.40 Total: -21.45 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.64 Total: -37.95 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.07 Total: -4.06 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.19 -9.02 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925786162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.867 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds