Wall clock time and date at job start Tue Mar 31 2020 23:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46827 * 2 1 4 4 N 1.46897 * 109.47587 * 239.99892 * 2 1 3 5 5 C 1.46902 * 111.00347 * 84.99667 * 4 2 1 6 6 C 1.52997 * 109.47378 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.50631 * 54.99773 * 6 5 4 8 8 C 1.53040 * 109.50004 * 294.92317 * 6 5 4 9 9 N 1.46856 * 109.51900 * 180.88107 * 8 6 5 10 10 C 1.46840 * 111.20045 * 61.74174 * 9 8 6 11 11 C 1.53038 * 109.52149 * 298.25573 * 10 9 8 12 12 C 1.53111 * 109.50574 * 175.07855 * 6 5 4 13 13 F 1.39904 * 109.52643 * 297.50400 * 12 6 5 14 14 F 1.39906 * 109.52115 * 57.68726 * 12 6 5 15 15 C 1.50701 * 109.47069 * 119.99301 * 2 1 3 16 16 C 1.38297 * 119.93529 * 259.99901 * 15 2 1 17 17 C 1.38096 * 120.07251 * 180.02562 * 16 15 2 18 18 C 1.38884 * 119.92867 * 0.02562 * 17 16 15 19 19 O 1.35748 * 120.06489 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00512 * 5.54431 * 19 18 17 21 21 H 1.07996 * 119.99771 * 354.93463 * 20 19 18 22 22 C 1.38651 * 119.99949 * 174.94039 * 20 19 18 23 23 N 1.31550 * 120.00278 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99788 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47234 * 270.00389 * 24 22 20 26 26 H 1.48499 * 109.47285 * 149.99834 * 24 22 20 27 27 H 1.48507 * 109.46888 * 30.00036 * 24 22 20 28 28 C 1.38874 * 119.85951 * 0.25970 * 18 17 16 29 29 C 1.38103 * 119.93228 * 359.48329 * 28 18 17 30 30 H 1.09004 * 109.46980 * 60.00526 * 1 2 3 31 31 H 1.09002 * 109.46827 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47446 * 300.00417 * 1 2 3 33 33 H 1.00895 * 111.00359 * 208.95545 * 4 2 1 34 34 H 1.09001 * 109.46769 * 300.00382 * 5 4 2 35 35 H 1.09000 * 109.47144 * 59.99961 * 5 4 2 36 36 H 1.08996 * 109.46119 * 300.88889 * 8 6 5 37 37 H 1.08992 * 109.46492 * 60.86396 * 8 6 5 38 38 H 1.00898 * 110.99563 * 297.64137 * 9 8 6 39 39 H 1.09005 * 109.46433 * 58.26968 * 10 9 8 40 40 H 1.08992 * 109.46279 * 178.25330 * 10 9 8 41 41 H 1.09005 * 109.50517 * 179.11912 * 11 10 9 42 42 H 1.08997 * 109.50702 * 299.23941 * 11 10 9 43 43 H 1.08006 * 119.96516 * 0.02562 * 16 15 2 44 44 H 1.08000 * 120.03672 * 179.97438 * 17 16 15 45 45 H 0.97000 * 120.00017 * 359.97438 * 23 22 20 46 46 H 1.08005 * 120.03513 * 179.72217 * 28 18 17 47 47 H 1.08003 * 119.96143 * 180.23214 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5953 -0.5333 -3.5744 7 1 1.9698 -1.4084 -3.7505 8 6 4.0398 -0.9778 -3.3341 9 7 4.5394 -1.6849 -4.5203 10 6 4.5459 -0.8078 -5.6979 11 6 3.1165 -0.3582 -6.0087 12 6 2.5451 0.3854 -4.7982 13 9 1.2190 0.7496 -5.0555 14 9 3.3070 1.5329 -4.5530 15 6 2.0323 -0.7103 1.2306 16 6 2.4586 0.0214 2.3240 17 6 2.9200 -0.6266 3.4529 18 6 2.9561 -2.0145 3.4892 19 8 3.4095 -2.6542 4.5973 20 6 3.7016 -1.8900 5.6690 21 1 3.6497 -0.8138 5.5950 22 6 4.0686 -2.4858 6.8659 23 7 4.1315 -3.7967 6.9561 24 14 4.4739 -1.4269 8.3506 25 1 5.9245 -1.1089 8.3507 26 1 4.1285 -2.1633 9.5930 27 1 3.6909 -0.1666 8.2883 28 6 2.5329 -2.7462 2.3873 29 6 2.0676 -2.0924 1.2633 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.9174 -1.1205 -1.0286 34 1 1.0872 0.6162 -2.5525 35 1 2.7589 1.0462 -2.1183 36 1 4.6620 -0.1033 -3.1439 37 1 4.0763 -1.6438 -2.4721 38 1 4.0027 -2.5212 -4.6953 39 1 5.1657 0.0660 -5.4965 40 1 4.9497 -1.3503 -6.5526 41 1 3.1235 0.3054 -6.8734 42 1 2.4992 -1.2304 -6.2237 43 1 2.4307 1.1007 2.2950 44 1 3.2531 -0.0547 4.3063 45 1 3.9207 -4.3466 6.1854 46 1 2.5640 -3.8255 2.4108 47 1 1.7349 -2.6611 0.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925786163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:07 Heat of formation + Delta-G solvation = -114.618883 kcal Electronic energy + Delta-G solvation = -29606.017848 eV Core-core repulsion = 25231.164731 eV Total energy + Delta-G solvation = -4374.853116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.35728 -47.32360 -39.44906 -38.91577 -37.57846 -35.78596 -33.06661 -32.14492 -31.43232 -30.32084 -29.57832 -27.97751 -25.67995 -24.99883 -24.09595 -22.77040 -22.20223 -21.56781 -20.84469 -20.08703 -18.35693 -17.86639 -17.53905 -16.96286 -16.86474 -16.10956 -15.59865 -15.33953 -15.28554 -14.56648 -14.37106 -14.33326 -14.14763 -14.01634 -13.82121 -13.75016 -13.63986 -13.51749 -13.08264 -13.02131 -12.79197 -12.73378 -12.60528 -12.49335 -12.13597 -12.05079 -11.74965 -11.49315 -11.41140 -11.15503 -11.00206 -10.81438 -10.68634 -10.46918 -10.33081 -10.23889 -9.43885 -9.02336 -8.78915 -8.54346 -8.27227 -7.29081 -6.79853 -4.09165 2.12276 2.19673 3.21896 3.21977 3.27989 3.41504 3.56441 3.63255 3.86695 3.96702 4.09108 4.22685 4.29794 4.48883 4.63010 4.79331 4.83703 4.93894 4.95872 5.01277 5.09319 5.14609 5.17979 5.22015 5.38794 5.42895 5.46039 5.51387 5.60485 5.60894 5.69269 5.78119 5.90596 5.95621 6.13336 6.29347 6.38508 6.40770 6.60789 6.74060 6.83048 6.89960 6.99578 7.23317 7.27683 7.38776 7.54164 7.69369 8.37320 8.89023 9.57812 10.64201 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002094 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.672568 B =13366.389250 C =13833.968765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.143 3.857 3 H 0.043 0.957 4 N -0.680 5.680 5 C 0.064 3.936 6 C -0.161 4.161 7 H 0.109 0.891 8 C 0.060 3.940 9 N -0.680 5.680 10 C 0.058 3.942 11 C -0.198 4.198 12 C 0.293 3.707 13 F -0.199 7.199 14 F -0.197 7.197 15 C -0.192 4.192 16 C -0.064 4.064 17 C -0.230 4.230 18 C 0.158 3.842 19 O -0.202 6.202 20 C -0.472 4.472 21 H 0.084 0.916 22 C 0.010 3.990 23 N -0.881 5.881 24 Si 1.098 2.902 25 H -0.281 1.281 26 H -0.275 1.275 27 H -0.283 1.283 28 C -0.197 4.197 29 C -0.055 4.055 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.345 0.655 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.346 0.654 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.282 0.718 46 H 0.115 0.885 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 7.412 -24.757 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 H 0.061 0.939 4 N -0.313 5.313 5 C -0.066 4.066 6 C -0.182 4.182 7 H 0.127 0.873 8 C -0.070 4.070 9 N -0.308 5.308 10 C -0.072 4.072 11 C -0.238 4.238 12 C 0.257 3.743 13 F -0.180 7.180 14 F -0.178 7.178 15 C -0.193 4.193 16 C -0.083 4.083 17 C -0.249 4.249 18 C 0.105 3.895 19 O -0.106 6.106 20 C -0.548 4.548 21 H 0.101 0.899 22 C -0.196 4.196 23 N -0.513 5.513 24 Si 0.923 3.077 25 H -0.207 1.207 26 H -0.200 1.200 27 H -0.208 1.208 28 C -0.217 4.217 29 C -0.074 4.074 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.165 0.835 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.145 0.855 45 H 0.093 0.907 46 H 0.133 0.867 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.195 6.971 -23.071 24.201 hybrid contribution -0.910 1.070 -1.670 2.183 sum -3.105 8.042 -24.741 26.200 Atomic orbital electron populations 1.21776 0.94402 1.02341 1.00526 1.20143 0.95253 0.94560 0.86631 0.93942 1.60627 1.33671 1.32671 1.04344 1.21880 1.01161 0.93812 0.89783 1.22957 1.01695 0.99624 0.93939 0.87308 1.22193 0.90669 0.99949 0.94226 1.60546 1.58386 1.08242 1.03635 1.22079 0.93188 0.98047 0.93932 1.23329 1.00833 1.02358 0.97245 1.21068 0.74086 0.82313 0.96871 1.93018 1.36889 1.92910 1.95220 1.92999 1.75747 1.53537 1.95514 1.19252 1.10195 0.93785 0.96082 1.20601 0.96801 0.98222 0.92663 1.21135 1.09443 0.94361 0.99995 1.19275 0.91336 0.90985 0.87910 1.83664 1.71374 1.36516 1.19033 1.22236 1.51531 0.91823 0.89213 0.89856 1.26541 0.95393 0.98310 0.99309 1.70541 1.41927 1.04198 1.34594 0.83057 0.76943 0.73739 0.74003 1.20679 1.20016 1.20832 1.20230 1.08634 0.99274 0.93519 1.20471 0.97084 0.93348 0.96452 0.93504 0.91941 0.92546 0.83508 0.90333 0.94348 0.89927 0.88566 0.83511 0.89790 0.89107 0.88879 0.88700 0.87665 0.85497 0.90744 0.86718 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.39 37.16 0.35 -1.30 16 2 C 0.14 1.86 2.82 -68.86 -0.19 1.67 16 3 H 0.04 0.55 7.66 -51.93 -0.40 0.16 16 4 N -0.68 -7.61 5.69 -107.95 -0.61 -8.23 16 5 C 0.06 0.64 4.69 -3.82 -0.02 0.62 16 6 C -0.16 -1.31 2.18 -90.54 -0.20 -1.51 16 7 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 8 C 0.06 0.47 5.48 -3.83 -0.02 0.45 16 9 N -0.68 -4.65 6.87 -113.82 -0.78 -5.44 16 10 C 0.06 0.33 6.44 -3.84 -0.02 0.31 16 11 C -0.20 -1.17 5.60 -26.65 -0.15 -1.32 16 12 C 0.29 2.53 1.65 -26.61 -0.04 2.48 16 13 F -0.20 -2.08 16.58 2.25 0.04 -2.04 16 14 F -0.20 -2.04 15.72 2.25 0.04 -2.01 16 15 C -0.19 -3.11 4.72 -104.58 -0.49 -3.60 16 16 C -0.06 -1.15 9.66 -39.61 -0.38 -1.53 16 17 C -0.23 -4.96 9.17 -39.39 -0.36 -5.33 16 18 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 19 O -0.20 -5.64 9.16 0.06 0.00 -5.64 16 20 C -0.47 -13.22 9.49 30.88 0.29 -12.93 16 21 H 0.08 2.20 5.20 -52.49 -0.27 1.93 16 22 C 0.01 0.28 5.49 -17.52 -0.10 0.18 16 23 N -0.88 -26.21 13.70 55.48 0.76 -25.45 16 24 Si 1.10 23.65 29.92 -169.99 -5.09 18.57 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 28 C -0.20 -4.03 9.99 -39.40 -0.39 -4.42 16 29 C -0.06 -0.94 8.99 -39.61 -0.36 -1.29 16 30 H 0.05 0.52 7.45 -51.93 -0.39 0.14 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.34 3.89 6.26 -39.29 -0.25 3.65 16 34 H 0.08 0.85 7.04 -51.93 -0.37 0.48 16 35 H 0.04 0.41 7.81 -51.93 -0.41 0.01 16 36 H 0.08 0.74 7.88 -51.93 -0.41 0.33 16 37 H 0.10 0.79 6.72 -51.93 -0.35 0.44 16 38 H 0.35 1.91 8.86 -39.29 -0.35 1.57 16 39 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.11 1.63 8.03 -52.48 -0.42 1.21 16 44 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 45 H 0.28 8.59 7.97 -40.82 -0.33 8.26 16 46 H 0.11 2.25 8.06 -52.48 -0.42 1.83 16 47 H 0.12 1.77 7.71 -52.48 -0.40 1.36 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -30.35 380.39 -9.06 -39.41 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.79 Total: 9.11 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -2.35 Total: -24.01 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.64 Total: -39.12 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: 0.00 Total: -5.64 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.07 Total: -4.05 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.09 Total: 18.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.35 -9.06 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925786163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.207 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds