Wall clock time and date at job start Tue Mar 31 2020 23:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46827 * 2 1 4 4 N 1.46897 * 109.47587 * 239.99892 * 2 1 3 5 5 C 1.46902 * 111.00347 * 84.99667 * 4 2 1 6 6 C 1.52997 * 109.47378 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.50631 * 54.99773 * 6 5 4 8 8 C 1.53040 * 109.50004 * 294.92317 * 6 5 4 9 9 N 1.46856 * 109.51900 * 180.88107 * 8 6 5 10 10 C 1.46840 * 111.20045 * 61.74174 * 9 8 6 11 11 C 1.53038 * 109.52149 * 298.25573 * 10 9 8 12 12 C 1.53111 * 109.50574 * 175.07855 * 6 5 4 13 13 F 1.39904 * 109.52643 * 297.50400 * 12 6 5 14 14 F 1.39906 * 109.52115 * 57.68726 * 12 6 5 15 15 C 1.50701 * 109.47069 * 119.99301 * 2 1 3 16 16 C 1.38297 * 119.93529 * 259.99901 * 15 2 1 17 17 C 1.38096 * 120.07251 * 180.02562 * 16 15 2 18 18 C 1.38884 * 119.92867 * 0.02562 * 17 16 15 19 19 O 1.35748 * 120.06489 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00512 * 5.54431 * 19 18 17 21 21 H 1.07996 * 119.99771 * 354.93463 * 20 19 18 22 22 C 1.38651 * 119.99949 * 174.94039 * 20 19 18 23 23 N 1.31550 * 120.00278 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99788 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47234 * 270.00389 * 24 22 20 26 26 H 1.48499 * 109.47285 * 149.99834 * 24 22 20 27 27 H 1.48507 * 109.46888 * 30.00036 * 24 22 20 28 28 C 1.38874 * 119.85951 * 0.25970 * 18 17 16 29 29 C 1.38103 * 119.93228 * 359.48329 * 28 18 17 30 30 H 1.09004 * 109.46980 * 60.00526 * 1 2 3 31 31 H 1.09002 * 109.46827 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47446 * 300.00417 * 1 2 3 33 33 H 1.00895 * 111.00359 * 208.95545 * 4 2 1 34 34 H 1.09001 * 109.46769 * 300.00382 * 5 4 2 35 35 H 1.09000 * 109.47144 * 59.99961 * 5 4 2 36 36 H 1.08996 * 109.46119 * 300.88889 * 8 6 5 37 37 H 1.08992 * 109.46492 * 60.86396 * 8 6 5 38 38 H 1.00898 * 110.99563 * 297.64137 * 9 8 6 39 39 H 1.09005 * 109.46433 * 58.26968 * 10 9 8 40 40 H 1.08992 * 109.46279 * 178.25330 * 10 9 8 41 41 H 1.09005 * 109.50517 * 179.11912 * 11 10 9 42 42 H 1.08997 * 109.50702 * 299.23941 * 11 10 9 43 43 H 1.08006 * 119.96516 * 0.02562 * 16 15 2 44 44 H 1.08000 * 120.03672 * 179.97438 * 17 16 15 45 45 H 0.97000 * 120.00017 * 359.97438 * 23 22 20 46 46 H 1.08005 * 120.03513 * 179.72217 * 28 18 17 47 47 H 1.08003 * 119.96143 * 180.23214 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5953 -0.5333 -3.5744 7 1 1.9698 -1.4084 -3.7505 8 6 4.0398 -0.9778 -3.3341 9 7 4.5394 -1.6849 -4.5203 10 6 4.5459 -0.8078 -5.6979 11 6 3.1165 -0.3582 -6.0087 12 6 2.5451 0.3854 -4.7982 13 9 1.2190 0.7496 -5.0555 14 9 3.3070 1.5329 -4.5530 15 6 2.0323 -0.7103 1.2306 16 6 2.4586 0.0214 2.3240 17 6 2.9200 -0.6266 3.4529 18 6 2.9561 -2.0145 3.4892 19 8 3.4095 -2.6542 4.5973 20 6 3.7016 -1.8900 5.6690 21 1 3.6497 -0.8138 5.5950 22 6 4.0686 -2.4858 6.8659 23 7 4.1315 -3.7967 6.9561 24 14 4.4739 -1.4269 8.3506 25 1 5.9245 -1.1089 8.3507 26 1 4.1285 -2.1633 9.5930 27 1 3.6909 -0.1666 8.2883 28 6 2.5329 -2.7462 2.3873 29 6 2.0676 -2.0924 1.2633 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.9174 -1.1205 -1.0286 34 1 1.0872 0.6162 -2.5525 35 1 2.7589 1.0462 -2.1183 36 1 4.6620 -0.1033 -3.1439 37 1 4.0763 -1.6438 -2.4721 38 1 4.0027 -2.5212 -4.6953 39 1 5.1657 0.0660 -5.4965 40 1 4.9497 -1.3503 -6.5526 41 1 3.1235 0.3054 -6.8734 42 1 2.4992 -1.2304 -6.2237 43 1 2.4307 1.1007 2.2950 44 1 3.2531 -0.0547 4.3063 45 1 3.9207 -4.3466 6.1854 46 1 2.5640 -3.8255 2.4108 47 1 1.7349 -2.6611 0.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925786163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:06 Heat of formation + Delta-G solvation = -134.640307 kcal Electronic energy + Delta-G solvation = -29606.886042 eV Core-core repulsion = 25231.164731 eV Total energy + Delta-G solvation = -4375.721311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.07910 -48.06311 -41.01737 -39.76857 -38.94201 -37.01675 -34.45167 -33.69150 -31.97569 -31.90281 -30.62762 -29.32967 -27.01768 -26.41988 -24.72089 -23.96222 -23.64611 -22.57983 -21.57533 -21.42385 -20.15947 -18.82961 -18.49716 -18.15628 -17.59863 -17.16735 -16.99819 -16.42178 -15.92136 -15.77983 -15.75791 -15.65354 -15.45773 -15.16260 -14.93548 -14.81214 -14.67582 -14.47945 -14.31314 -14.08885 -14.01388 -13.62203 -13.46849 -13.26914 -13.09866 -12.93656 -12.90771 -12.77180 -12.42635 -12.36050 -12.20487 -12.18027 -12.06993 -11.93726 -11.70826 -11.29505 -11.26012 -10.75767 -9.85403 -9.55629 -9.49236 -9.02454 -8.93900 -6.24958 0.52129 0.59713 1.48006 1.61104 1.76639 2.34729 2.56805 2.78721 2.91745 3.03894 3.11083 3.22817 3.33360 3.33952 3.54217 3.67517 3.80269 3.98912 4.04024 4.14980 4.15907 4.26268 4.30535 4.36958 4.43196 4.52467 4.54385 4.59466 4.68831 4.69108 4.76331 4.79181 4.90038 4.91488 4.97057 5.02653 5.08009 5.20095 5.23578 5.37741 5.49372 5.62764 5.71181 5.87328 6.02703 6.05771 6.28474 6.35891 6.39784 6.85811 7.62201 8.50276 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002094 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.672568 B =13366.389250 C =13833.968765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.145 3.855 3 H 0.052 0.948 4 N -0.675 5.675 5 C 0.067 3.933 6 C -0.151 4.151 7 H 0.118 0.882 8 C 0.065 3.935 9 N -0.686 5.686 10 C 0.060 3.940 11 C -0.190 4.190 12 C 0.284 3.716 13 F -0.211 7.211 14 F -0.210 7.210 15 C -0.161 4.161 16 C -0.064 4.064 17 C -0.240 4.240 18 C 0.116 3.884 19 O -0.252 6.252 20 C -0.486 4.486 21 H 0.090 0.910 22 C -0.045 4.045 23 N -0.918 5.918 24 Si 1.147 2.853 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.260 1.260 28 C -0.203 4.203 29 C -0.043 4.043 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.346 0.654 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.356 0.644 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.115 0.885 45 H 0.261 0.739 46 H 0.115 0.885 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 9.022 -27.555 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.036 3.964 3 H 0.070 0.930 4 N -0.308 5.308 5 C -0.063 4.063 6 C -0.172 4.172 7 H 0.136 0.864 8 C -0.065 4.065 9 N -0.315 5.315 10 C -0.070 4.070 11 C -0.230 4.230 12 C 0.248 3.752 13 F -0.192 7.192 14 F -0.191 7.191 15 C -0.162 4.162 16 C -0.082 4.082 17 C -0.259 4.259 18 C 0.067 3.933 19 O -0.160 6.160 20 C -0.562 4.562 21 H 0.108 0.892 22 C -0.241 4.241 23 N -0.552 5.552 24 Si 0.963 3.037 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.184 1.184 28 C -0.222 4.222 29 C -0.061 4.061 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.176 0.824 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.155 0.845 44 H 0.133 0.867 45 H 0.069 0.931 46 H 0.133 0.867 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.994 8.606 -25.946 27.500 hybrid contribution -0.805 0.698 -1.217 1.617 sum -3.798 9.303 -27.164 28.963 Atomic orbital electron populations 1.21748 0.93376 1.02332 1.01365 1.20154 0.95933 0.94630 0.85654 0.93023 1.60615 1.33773 1.32609 1.03823 1.21850 1.00884 0.93620 0.89923 1.22883 1.01902 0.99497 0.92946 0.86437 1.22081 0.90200 0.99452 0.94783 1.60529 1.58567 1.08706 1.03676 1.22106 0.93015 0.97746 0.94150 1.23327 1.00829 1.02697 0.96139 1.21436 0.73555 0.82006 0.98226 1.92995 1.37807 1.93047 1.95338 1.92975 1.76023 1.54407 1.95692 1.19713 1.06290 0.93602 0.96576 1.20934 0.95690 0.99951 0.91660 1.21220 1.10028 0.93581 1.01097 1.19853 0.93134 0.92423 0.87910 1.83644 1.74495 1.37565 1.20267 1.22588 1.51419 0.92336 0.89893 0.89235 1.28361 0.94652 0.98698 1.02395 1.70680 1.45742 1.05244 1.33569 0.82548 0.77951 0.72903 0.70338 1.18889 1.19792 1.18439 1.20502 1.08422 0.99607 0.93664 1.20785 0.95421 0.93948 0.95959 0.91901 0.92371 0.92629 0.83374 0.90717 0.94954 0.91223 0.88777 0.82444 0.90962 0.87124 0.88135 0.87118 0.84540 0.86703 0.93091 0.86707 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.39 71.98 0.68 -2.07 16 2 C 0.15 3.25 2.82 44.17 0.12 3.38 16 3 H 0.05 1.13 7.66 -2.39 -0.02 1.11 16 4 N -0.68 -12.79 5.69 -495.45 -2.82 -15.61 16 5 C 0.07 1.16 4.69 86.30 0.40 1.56 16 6 C -0.15 -2.07 2.18 -10.74 -0.02 -2.10 16 7 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 8 C 0.07 0.89 5.48 86.32 0.47 1.36 16 9 N -0.69 -7.70 6.87 -514.02 -3.53 -11.23 16 10 C 0.06 0.54 6.44 86.33 0.56 1.10 16 11 C -0.19 -1.74 5.60 30.65 0.17 -1.56 16 12 C 0.28 4.26 1.65 30.67 0.05 4.31 16 13 F -0.21 -3.94 16.58 44.97 0.75 -3.20 16 14 F -0.21 -4.03 15.72 44.97 0.71 -3.32 16 15 C -0.16 -4.73 4.72 -19.84 -0.09 -4.82 16 16 C -0.06 -2.15 9.66 22.25 0.21 -1.94 16 17 C -0.24 -10.42 9.17 22.39 0.21 -10.21 16 18 C 0.12 5.72 6.65 22.58 0.15 5.87 16 19 O -0.25 -14.96 9.16 -22.70 -0.21 -15.17 16 20 C -0.49 -28.55 9.49 67.92 0.64 -27.91 16 21 H 0.09 4.92 5.20 -2.91 -0.02 4.90 16 22 C -0.04 -2.59 5.49 84.83 0.47 -2.13 16 23 N -0.92 -57.60 13.70 21.61 0.30 -57.31 16 24 Si 1.15 48.39 29.92 68.60 2.05 50.44 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 28 C -0.20 -8.30 9.99 22.39 0.22 -8.08 16 29 C -0.04 -1.36 8.99 22.25 0.20 -1.16 16 30 H 0.06 1.16 7.45 -2.39 -0.02 1.14 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.35 6.65 6.26 -89.70 -0.56 6.09 16 34 H 0.07 1.38 7.04 -2.39 -0.02 1.37 16 35 H 0.03 0.61 7.81 -2.39 -0.02 0.59 16 36 H 0.07 1.14 7.88 -2.39 -0.02 1.12 16 37 H 0.09 1.32 6.72 -2.39 -0.02 1.30 16 38 H 0.36 2.89 8.86 -89.70 -0.79 2.09 16 39 H 0.07 0.85 7.88 -2.38 -0.02 0.83 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.14 3.77 8.03 -2.91 -0.02 3.74 16 44 H 0.12 5.19 5.64 -2.91 -0.02 5.18 16 45 H 0.26 17.04 7.97 -92.71 -0.74 16.30 16 46 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 47 H 0.15 3.89 7.71 -2.91 -0.02 3.87 16 Total: -1.00 -70.37 380.39 1.37 -68.99 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.32 Total: 30.80 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 4.44 Total: -44.40 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -6.05 Total: -84.15 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.21 Total: -15.17 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 1.45 Total: -6.52 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.05 Total: 50.44 kcal Total: -70.37 1.37 -68.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925786163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.647 kcal (2) G-P(sol) polarization free energy of solvation -70.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds