Wall clock time and date at job start Tue Mar 31 2020 23:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.46977 * 2 1 4 4 N 1.46904 * 109.47126 * 119.99817 * 2 1 3 5 5 C 1.46905 * 111.00045 * 275.00688 * 4 2 1 6 6 C 1.53004 * 109.46891 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.50352 * 54.99886 * 6 5 4 8 8 C 1.53034 * 109.50148 * 294.91778 * 6 5 4 9 9 N 1.46850 * 109.52142 * 180.88540 * 8 6 5 10 10 C 1.46847 * 111.20142 * 61.73733 * 9 8 6 11 11 C 1.53032 * 109.52516 * 298.26114 * 10 9 8 12 12 C 1.53124 * 109.49928 * 175.07695 * 6 5 4 13 13 F 1.39901 * 109.51949 * 297.49908 * 12 6 5 14 14 F 1.39895 * 109.52375 * 57.68952 * 12 6 5 15 15 C 1.50700 * 109.47719 * 239.99899 * 2 1 3 16 16 C 1.38295 * 119.93095 * 99.99779 * 15 2 1 17 17 C 1.38093 * 120.07100 * 179.97438 * 16 15 2 18 18 C 1.38878 * 119.93129 * 359.97438 * 17 16 15 19 19 O 1.35755 * 120.07124 * 179.97438 * 18 17 16 20 20 C 1.34830 * 117.00024 * 5.53677 * 19 18 17 21 21 H 1.08001 * 119.99712 * 354.94423 * 20 19 18 22 22 C 1.38649 * 119.99744 * 174.94210 * 20 19 18 23 23 N 1.31550 * 120.00557 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99893 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46973 * 60.00141 * 24 22 20 26 26 H 1.48499 * 109.47336 * 300.00363 * 24 22 20 27 27 H 1.48501 * 109.47418 * 179.97438 * 24 22 20 28 28 C 1.38881 * 119.86025 * 0.25904 * 18 17 16 29 29 C 1.38097 * 119.92820 * 359.49087 * 28 18 17 30 30 H 1.09004 * 109.47041 * 60.00510 * 1 2 3 31 31 H 1.09010 * 109.47116 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47633 * 300.00299 * 1 2 3 33 33 H 1.00898 * 111.00233 * 151.04858 * 4 2 1 34 34 H 1.09001 * 109.46680 * 299.99903 * 5 4 2 35 35 H 1.08996 * 109.47481 * 59.99353 * 5 4 2 36 36 H 1.09003 * 109.46179 * 300.89589 * 8 6 5 37 37 H 1.08995 * 109.46815 * 60.86611 * 8 6 5 38 38 H 1.00901 * 110.99476 * 297.64576 * 9 8 6 39 39 H 1.09006 * 109.45764 * 58.27853 * 10 9 8 40 40 H 1.09001 * 109.46267 * 178.25208 * 10 9 8 41 41 H 1.09002 * 109.50661 * 179.11656 * 11 10 9 42 42 H 1.08995 * 109.50464 * 299.23767 * 11 10 9 43 43 H 1.08002 * 119.96526 * 359.95954 * 16 15 2 44 44 H 1.08005 * 120.04000 * 179.97438 * 17 16 15 45 45 H 0.97006 * 119.99679 * 359.97438 * 23 22 20 46 46 H 1.07999 * 120.03683 * 179.72250 * 28 18 17 47 47 H 1.08003 * 119.96689 * 180.23875 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2226 2.3470 6 6 2.5948 -0.5332 3.5746 7 1 3.5505 -1.0022 3.3404 8 6 1.5816 -1.6089 3.9721 9 7 2.0631 -2.3205 5.1630 10 6 2.1999 -1.4098 6.3068 11 6 3.2316 -0.3282 5.9789 12 6 2.7772 0.4455 4.7381 13 9 3.7441 1.3984 4.4002 14 9 1.5621 1.0851 5.0057 15 6 2.0324 -0.7104 -1.2304 16 6 2.4587 0.0212 -2.3239 17 6 2.9202 -0.6268 -3.4526 18 6 2.9565 -2.0147 -3.4888 19 8 3.4091 -2.6546 -4.5972 20 6 3.9156 -1.8871 -5.5833 21 1 3.8732 -0.8107 -5.5055 22 6 4.4908 -2.4797 -6.6969 23 7 4.5421 -3.7907 -6.7918 24 14 5.1919 -1.4163 -8.0634 25 1 6.2719 -0.5561 -7.5166 26 1 4.1161 -0.5618 -8.6271 27 1 5.7456 -2.2856 -9.1325 28 6 2.5232 -2.7466 -2.3909 29 6 2.0676 -2.0926 -1.2632 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0278 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.9173 -1.1205 1.0288 34 1 2.7586 1.0463 2.1183 35 1 1.0869 0.6164 2.5525 36 1 0.6222 -1.1405 4.1922 37 1 1.4607 -2.3153 3.1510 38 1 2.9328 -2.7956 4.9732 39 1 1.2375 -0.9424 6.5159 40 1 2.5283 -1.9717 7.1812 41 1 3.3213 0.3568 6.8221 42 1 4.1974 -0.7939 5.7832 43 1 2.4304 1.1004 -2.2951 44 1 3.2525 -0.0550 -4.3065 45 1 4.1777 -4.3429 -6.0824 46 1 2.5460 -3.8260 -2.4177 47 1 1.7341 -2.6611 -0.4076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925786164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:09 Heat of formation + Delta-G solvation = -115.289639 kcal Electronic energy + Delta-G solvation = -29558.413209 eV Core-core repulsion = 25183.531007 eV Total energy + Delta-G solvation = -4374.882203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.35333 -47.32080 -39.42439 -38.85984 -37.58644 -35.77965 -33.04807 -32.14839 -31.38962 -30.32837 -29.62308 -27.98254 -25.54143 -25.00081 -24.02866 -22.76404 -22.21107 -21.55818 -20.92713 -20.07249 -18.36152 -17.83868 -17.45923 -17.01545 -16.79414 -16.10080 -15.59924 -15.35075 -15.23655 -14.57317 -14.36649 -14.26752 -14.07852 -14.01814 -13.81556 -13.76798 -13.66395 -13.55271 -13.03721 -12.92408 -12.77006 -12.67794 -12.63115 -12.49133 -12.26915 -11.88408 -11.77991 -11.57097 -11.32143 -11.16416 -11.01205 -10.81212 -10.65374 -10.46631 -10.31746 -10.24982 -9.44489 -9.03050 -8.79796 -8.51102 -8.27669 -7.29579 -6.80526 -4.09817 2.11794 2.19324 3.21438 3.22850 3.26076 3.42833 3.57314 3.66242 3.89439 3.99439 4.08810 4.25766 4.34554 4.48830 4.62080 4.82089 4.87299 4.94873 4.98506 5.01354 5.07711 5.16049 5.18449 5.31548 5.37650 5.44830 5.46034 5.57305 5.60321 5.61990 5.77687 5.83490 5.90461 5.95352 6.12835 6.28989 6.38637 6.47797 6.60412 6.73562 6.87226 6.90009 6.99052 7.22613 7.26972 7.38330 7.53145 7.68920 8.36545 8.88320 9.57072 10.63454 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.002038 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.383742 B =13733.164159 C =13878.880552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.143 3.857 3 H 0.042 0.958 4 N -0.678 5.678 5 C 0.064 3.936 6 C -0.160 4.160 7 H 0.098 0.902 8 C 0.071 3.929 9 N -0.684 5.684 10 C 0.058 3.942 11 C -0.198 4.198 12 C 0.292 3.708 13 F -0.201 7.201 14 F -0.196 7.196 15 C -0.192 4.192 16 C -0.065 4.065 17 C -0.230 4.230 18 C 0.158 3.842 19 O -0.202 6.202 20 C -0.472 4.472 21 H 0.083 0.917 22 C 0.010 3.990 23 N -0.880 5.880 24 Si 1.095 2.905 25 H -0.281 1.281 26 H -0.281 1.281 27 H -0.273 1.273 28 C -0.198 4.198 29 C -0.054 4.054 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.345 0.655 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.345 0.655 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.282 0.718 46 H 0.115 0.885 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 7.165 24.551 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.035 3.965 3 H 0.060 0.940 4 N -0.310 5.310 5 C -0.067 4.067 6 C -0.182 4.182 7 H 0.116 0.884 8 C -0.058 4.058 9 N -0.312 5.312 10 C -0.072 4.072 11 C -0.238 4.238 12 C 0.256 3.744 13 F -0.182 7.182 14 F -0.177 7.177 15 C -0.193 4.193 16 C -0.083 4.083 17 C -0.250 4.250 18 C 0.105 3.895 19 O -0.106 6.106 20 C -0.548 4.548 21 H 0.101 0.899 22 C -0.195 4.195 23 N -0.512 5.512 24 Si 0.919 3.081 25 H -0.208 1.208 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.217 4.217 29 C -0.073 4.073 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.164 0.836 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.163 0.837 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.145 0.855 45 H 0.092 0.908 46 H 0.133 0.867 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.643 6.386 23.313 24.614 hybrid contribution 0.930 1.661 1.005 2.152 sum -3.713 8.047 24.318 25.882 Atomic orbital electron populations 1.21772 0.94334 1.02373 1.00522 1.20139 0.95268 0.94519 0.86617 0.94034 1.60605 1.33567 1.32548 1.04269 1.21893 1.01318 0.93748 0.89709 1.22950 1.03468 0.97525 0.94207 0.88392 1.22100 0.96552 0.94438 0.92756 1.60604 1.35821 1.29144 1.05597 1.22071 0.98373 0.91977 0.94814 1.23329 1.02473 1.00830 0.97147 1.21094 0.73630 0.83381 0.96337 1.93020 1.63857 1.67646 1.93661 1.92992 1.45833 1.83902 1.94987 1.19256 1.10135 0.93791 0.96103 1.20602 0.96772 0.98215 0.92743 1.21131 1.09437 0.94378 1.00028 1.19282 0.92249 0.90978 0.87034 1.83668 1.68082 1.36237 1.22593 1.22199 1.41916 0.91732 0.98976 0.89916 1.26540 0.95776 0.98369 0.98859 1.70575 1.40732 1.04085 1.35783 0.83113 0.76434 0.73978 0.74543 1.20756 1.20713 1.19739 1.20235 1.09156 0.99285 0.93015 1.20471 0.97021 0.93336 0.96470 0.92615 0.91873 0.93458 0.83628 0.94607 0.90107 0.90062 0.87615 0.83722 0.89828 0.89269 0.88936 0.88797 0.87697 0.85521 0.90782 0.86722 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.39 37.15 0.35 -1.24 16 2 C 0.14 1.84 2.82 -68.87 -0.19 1.64 16 3 H 0.04 0.54 7.66 -51.93 -0.40 0.14 16 4 N -0.68 -7.36 5.16 -107.95 -0.56 -7.92 16 5 C 0.06 0.63 4.62 -3.82 -0.02 0.61 16 6 C -0.16 -1.30 2.12 -90.54 -0.19 -1.49 16 7 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 8 C 0.07 0.55 5.60 -3.83 -0.02 0.53 16 9 N -0.68 -4.60 6.87 -113.82 -0.78 -5.38 16 10 C 0.06 0.33 6.44 -3.84 -0.02 0.31 16 11 C -0.20 -1.21 5.60 -26.65 -0.15 -1.36 16 12 C 0.29 2.55 1.65 -26.60 -0.04 2.50 16 13 F -0.20 -2.18 16.58 2.25 0.04 -2.14 16 14 F -0.20 -2.00 15.72 2.25 0.04 -1.97 16 15 C -0.19 -3.08 4.72 -104.58 -0.49 -3.57 16 16 C -0.06 -1.16 9.66 -39.61 -0.38 -1.54 16 17 C -0.23 -4.97 9.17 -39.40 -0.36 -5.33 16 18 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 19 O -0.20 -5.64 9.16 0.03 0.00 -5.64 16 20 C -0.47 -13.23 9.49 30.88 0.29 -12.93 16 21 H 0.08 2.18 5.20 -52.49 -0.27 1.91 16 22 C 0.01 0.28 5.49 -17.52 -0.10 0.18 16 23 N -0.88 -26.17 13.70 55.48 0.76 -25.41 16 24 Si 1.10 23.57 29.92 -169.99 -5.09 18.48 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 C -0.20 -4.03 9.99 -39.39 -0.39 -4.42 16 29 C -0.05 -0.92 8.99 -39.61 -0.36 -1.27 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 33 H 0.34 3.88 7.99 -39.29 -0.31 3.57 16 34 H 0.04 0.40 7.66 -51.93 -0.40 0.00 16 35 H 0.08 0.83 7.19 -51.93 -0.37 0.46 16 36 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 37 H 0.11 0.90 7.78 -51.93 -0.40 0.49 16 38 H 0.34 1.92 8.86 -39.29 -0.35 1.57 16 39 H 0.08 0.55 7.88 -51.93 -0.41 0.14 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 44 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 45 H 0.28 8.57 7.97 -40.82 -0.33 8.25 16 46 H 0.11 2.25 8.06 -52.49 -0.42 1.82 16 47 H 0.12 1.74 7.71 -52.48 -0.40 1.34 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -30.15 382.64 -9.08 -39.23 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.92 Total: 8.86 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.34 Total: -23.89 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.58 Total: -38.71 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: 0.00 Total: -5.64 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.07 Total: -4.10 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.09 Total: 18.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.15 -9.08 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925786164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.057 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds