Wall clock time and date at job start Tue Mar 31 2020 23:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46945 * 2 1 4 4 N 1.46898 * 109.47421 * 119.99954 * 2 1 3 5 5 C 1.46899 * 111.00230 * 275.00217 * 4 2 1 6 6 C 1.52994 * 109.47597 * 179.97438 * 5 4 2 7 7 H 1.09006 * 109.50093 * 304.92511 * 6 5 4 8 8 C 1.53045 * 109.50289 * 64.99783 * 6 5 4 9 9 N 1.46843 * 109.52150 * 179.12157 * 8 6 5 10 10 C 1.46844 * 111.20365 * 298.25816 * 9 8 6 11 11 C 1.53038 * 109.52028 * 61.74012 * 10 9 8 12 12 C 1.53114 * 109.28200 * 300.82537 * 11 10 9 13 13 F 1.39899 * 109.52123 * 297.74876 * 12 11 10 14 14 F 1.39899 * 109.52272 * 177.55967 * 12 11 10 15 15 C 1.50701 * 109.47228 * 240.00017 * 2 1 3 16 16 C 1.38299 * 119.92830 * 279.72903 * 15 2 1 17 17 C 1.38105 * 120.06375 * 179.72272 * 16 15 2 18 18 C 1.38880 * 119.93192 * 0.54878 * 17 16 15 19 19 O 1.35747 * 120.06691 * 179.74639 * 18 17 16 20 20 C 1.34828 * 116.99785 * 174.43860 * 19 18 17 21 21 H 1.08004 * 120.00191 * 5.06093 * 20 19 18 22 22 C 1.38656 * 120.00335 * 185.05690 * 20 19 18 23 23 N 1.31559 * 119.99643 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00487 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47490 * 89.99925 * 24 22 20 26 26 H 1.48502 * 109.47407 * 210.00340 * 24 22 20 27 27 H 1.48504 * 109.47236 * 330.00162 * 24 22 20 28 28 C 1.38875 * 119.86197 * 359.72366 * 18 17 16 29 29 C 1.38101 * 119.92963 * 0.02562 * 28 18 17 30 30 H 1.08998 * 109.46945 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47284 * 60.00047 * 1 2 3 32 32 H 1.08998 * 109.47045 * 299.99909 * 1 2 3 33 33 H 1.00891 * 111.00042 * 151.04670 * 4 2 1 34 34 H 1.08998 * 109.47048 * 299.99915 * 5 4 2 35 35 H 1.08999 * 109.47251 * 59.99356 * 5 4 2 36 36 H 1.08997 * 109.45893 * 299.13983 * 8 6 5 37 37 H 1.09002 * 109.45861 * 59.10363 * 8 6 5 38 38 H 1.00899 * 111.00199 * 62.36024 * 9 8 6 39 39 H 1.08996 * 109.46583 * 181.75866 * 10 9 8 40 40 H 1.09003 * 109.46003 * 301.74645 * 10 9 8 41 41 H 1.08999 * 109.50359 * 60.77016 * 11 10 9 42 42 H 1.09000 * 109.50403 * 180.84239 * 11 10 9 43 43 H 1.08001 * 119.96860 * 359.97438 * 16 15 2 44 44 H 1.08005 * 120.03156 * 180.26480 * 17 16 15 45 45 H 0.97005 * 120.00322 * 179.97438 * 23 22 20 46 46 H 1.07999 * 120.03571 * 180.02562 * 28 18 17 47 47 H 1.08005 * 119.96339 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5951 -0.5331 3.5744 7 1 1.9687 -1.4075 3.7513 8 6 4.0391 -0.9794 3.3335 9 7 4.5385 -1.6865 4.5196 10 6 4.5469 -0.8087 5.6969 11 6 3.1181 -0.3573 6.0083 12 6 2.5477 0.3866 4.7977 13 9 3.3113 1.5326 4.5508 14 9 1.2225 0.7531 5.0560 15 6 2.0323 -0.7104 -1.2305 16 6 2.0714 -2.0925 -1.2617 17 6 2.5259 -2.7465 -2.3899 18 6 2.9546 -2.0147 -3.4896 19 8 3.4067 -2.6546 -4.5982 20 6 3.6984 -1.8904 -5.6699 21 1 3.6473 -0.8141 -5.5957 22 6 4.0642 -2.4861 -6.8674 23 7 4.1270 -3.7971 -6.9576 24 14 4.4690 -1.4273 -8.3521 25 1 5.9198 -1.1104 -8.3533 26 1 4.1221 -2.1632 -9.5944 27 1 3.6871 -0.1664 -8.2889 28 6 2.9195 -0.6268 -3.4531 29 6 2.4590 0.0212 -2.3238 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 2.9173 -1.1204 1.0287 34 1 2.7588 1.0462 2.1182 35 1 1.0871 0.6163 2.5525 36 1 4.0741 -1.6459 2.4718 37 1 4.6621 -0.1057 3.1423 38 1 4.0011 -2.5221 4.6955 39 1 4.9508 -1.3512 6.5516 40 1 5.1673 0.0643 5.4945 41 1 2.5000 -1.2288 6.2242 42 1 3.1264 0.3061 6.8731 43 1 1.7424 -2.6610 -0.4043 44 1 2.5521 -3.8259 -2.4153 45 1 4.3825 -4.2139 -7.7954 46 1 3.2518 -0.0550 -4.3068 47 1 2.4311 1.1005 -2.2949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925786165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:12 Heat of formation + Delta-G solvation = -108.257368 kcal Electronic energy + Delta-G solvation = -29569.027297 eV Core-core repulsion = 25194.450036 eV Total energy + Delta-G solvation = -4374.577260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.33546 -47.30189 -39.37432 -38.86035 -37.47459 -35.68967 -32.99890 -32.17291 -31.40820 -30.25171 -29.53693 -27.95992 -25.69143 -25.34239 -24.06859 -22.71517 -22.20395 -21.51525 -20.81677 -19.97556 -17.97160 -17.83628 -17.51589 -17.00597 -16.83891 -16.10406 -15.55949 -15.29192 -15.09360 -14.54228 -14.43242 -14.30643 -14.09435 -14.02718 -13.75872 -13.70222 -13.56674 -13.43765 -13.05110 -12.80405 -12.75176 -12.63767 -12.55218 -12.35424 -12.09885 -11.97786 -11.72866 -11.67203 -11.45258 -11.29867 -11.18720 -10.84355 -10.65686 -10.63703 -10.44329 -10.28268 -9.35723 -8.99670 -8.84618 -8.50019 -8.19462 -7.20363 -6.46916 -4.05804 2.20316 2.27189 3.11295 3.12433 3.17164 3.24642 3.59162 3.65855 3.89394 3.95114 3.99427 4.25434 4.33201 4.53956 4.65924 4.81862 4.86819 4.96829 4.98412 5.05473 5.10592 5.17487 5.24540 5.30272 5.44224 5.45412 5.49353 5.54841 5.65225 5.67439 5.72597 5.85149 5.95174 6.00343 6.21233 6.36364 6.42527 6.44319 6.70419 6.81252 6.86049 6.96665 7.01487 7.23159 7.34374 7.41130 7.47110 7.80835 7.98064 8.98739 9.68733 10.71017 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002089 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.925047 B =13402.580760 C =13872.045751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.143 3.857 3 H 0.042 0.958 4 N -0.680 5.680 5 C 0.064 3.936 6 C -0.161 4.161 7 H 0.109 0.891 8 C 0.060 3.940 9 N -0.680 5.680 10 C 0.058 3.942 11 C -0.198 4.198 12 C 0.293 3.707 13 F -0.197 7.197 14 F -0.200 7.200 15 C -0.194 4.194 16 C -0.056 4.056 17 C -0.194 4.194 18 C 0.156 3.844 19 O -0.177 6.177 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.234 4.234 29 C -0.064 4.064 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.345 0.655 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.347 0.653 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 7.110 24.116 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 H 0.060 0.940 4 N -0.313 5.313 5 C -0.066 4.066 6 C -0.182 4.182 7 H 0.127 0.873 8 C -0.070 4.070 9 N -0.308 5.308 10 C -0.072 4.072 11 C -0.238 4.238 12 C 0.257 3.743 13 F -0.178 7.178 14 F -0.181 7.181 15 C -0.195 4.195 16 C -0.074 4.074 17 C -0.214 4.214 18 C 0.102 3.898 19 O -0.080 6.080 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.254 4.254 29 C -0.083 4.083 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.165 0.835 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.165 0.835 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.144 0.856 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.398 6.582 23.882 24.888 hybrid contribution -0.208 1.440 -0.777 1.649 sum -2.606 8.022 23.105 24.597 Atomic orbital electron populations 1.21773 0.94460 1.02336 1.00463 1.20138 0.95212 0.94531 0.86675 0.94015 1.60626 1.33689 1.32648 1.04350 1.21876 1.01126 0.93819 0.89810 1.22960 1.01707 0.99603 0.93942 0.87301 1.22196 0.90672 0.99950 0.94228 1.60542 1.58360 1.08267 1.03640 1.22080 0.93196 0.98029 0.93945 1.23326 1.00853 1.02354 0.97238 1.21067 0.74072 0.82329 0.96870 1.92997 1.75660 1.53658 1.95486 1.93016 1.36975 1.92862 1.95202 1.19231 1.10419 0.93807 0.96066 1.20477 0.97182 0.93308 0.96451 1.20251 1.08355 0.99408 0.93367 1.19425 0.91046 0.90924 0.88447 1.83979 1.70579 1.35332 1.18145 1.21321 1.47387 0.90745 0.87379 0.89095 1.25292 0.96771 0.96304 0.98152 1.70039 1.44047 1.08663 1.26933 0.85715 0.79004 0.79067 0.79667 1.19868 1.20230 1.19217 1.21118 1.09844 0.94427 0.99964 1.20581 0.96867 0.98122 0.92737 0.91927 0.92562 0.93583 0.83481 0.94379 0.90366 0.88515 0.89935 0.83505 0.89126 0.89805 0.88699 0.88906 0.86340 0.86565 0.91996 0.85625 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.39 37.16 0.35 -1.31 16 2 C 0.14 1.88 2.82 -68.87 -0.19 1.69 16 3 H 0.04 0.55 7.66 -51.93 -0.40 0.15 16 4 N -0.68 -7.67 5.68 -107.96 -0.61 -8.29 16 5 C 0.06 0.65 4.69 -3.83 -0.02 0.63 16 6 C -0.16 -1.33 2.18 -90.54 -0.20 -1.52 16 7 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 8 C 0.06 0.47 5.48 -3.83 -0.02 0.45 16 9 N -0.68 -4.70 6.87 -113.82 -0.78 -5.48 16 10 C 0.06 0.34 6.44 -3.84 -0.02 0.31 16 11 C -0.20 -1.19 5.60 -26.65 -0.15 -1.34 16 12 C 0.29 2.55 1.65 -26.61 -0.04 2.50 16 13 F -0.20 -2.05 15.71 2.25 0.04 -2.02 16 14 F -0.20 -2.10 16.58 2.25 0.04 -2.06 16 15 C -0.19 -3.15 4.72 -104.58 -0.49 -3.64 16 16 C -0.06 -0.95 8.99 -39.61 -0.36 -1.31 16 17 C -0.19 -4.01 9.99 -39.39 -0.39 -4.40 16 18 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 19 O -0.18 -5.01 9.76 0.06 0.00 -5.01 16 20 C -0.39 -10.89 9.49 30.89 0.29 -10.59 16 21 H 0.09 2.34 5.20 -52.48 -0.27 2.06 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -25.16 13.67 55.48 0.76 -24.41 16 24 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 C -0.23 -5.00 9.17 -39.40 -0.36 -5.36 16 29 C -0.06 -1.15 9.66 -39.61 -0.38 -1.53 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.52 7.45 -51.93 -0.39 0.13 16 33 H 0.35 3.92 6.25 -39.30 -0.25 3.68 16 34 H 0.04 0.41 7.81 -51.93 -0.41 0.01 16 35 H 0.08 0.85 7.04 -51.93 -0.37 0.49 16 36 H 0.10 0.80 6.72 -51.93 -0.35 0.45 16 37 H 0.08 0.74 7.88 -51.93 -0.41 0.33 16 38 H 0.35 1.94 8.86 -39.29 -0.35 1.59 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.12 1.77 7.70 -52.49 -0.40 1.37 16 44 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 47 H 0.10 1.61 8.03 -52.48 -0.42 1.19 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -30.16 380.90 -9.00 -39.17 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.81 Total: 7.97 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.35 Total: -21.01 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.64 Total: -38.18 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: 0.00 Total: -5.01 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.07 Total: -4.08 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.16 -9.00 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925786165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.091 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds