Wall clock time and date at job start Tue Mar 31 2020 23:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 O 1.42899 * 109.47056 * 240.00004 * 2 1 3 5 5 C 1.53002 * 109.47139 * 120.00104 * 2 1 3 6 6 C 1.52996 * 109.47481 * 185.78620 * 5 2 1 7 7 H 1.09006 * 109.99659 * 52.63258 * 6 5 2 8 8 C 1.54330 * 109.99070 * 291.59848 * 6 5 2 9 9 C 1.55159 * 103.02056 * 218.65998 * 8 6 5 10 10 C 1.54908 * 101.57776 * 35.31052 * 9 8 6 11 11 N 1.47017 * 109.88516 * 173.72783 * 6 5 2 12 12 C 1.34778 * 125.65272 * 298.39943 * 11 6 5 13 13 O 1.21354 * 119.99504 * 354.43023 * 12 11 6 14 14 C 1.49443 * 120.00399 * 174.43872 * 12 11 6 15 15 O 1.21354 * 120.00097 * 359.97438 * 14 12 11 16 16 N 1.34778 * 120.00399 * 180.02562 * 14 12 11 17 17 C 1.47021 * 125.64178 * 359.96886 * 16 14 12 18 18 C 1.54326 * 107.27004 * 178.98626 * 17 16 14 19 19 C 1.55156 * 102.94284 * 337.80942 * 18 17 16 20 20 O 1.42899 * 111.00278 * 277.38983 * 19 18 17 21 21 C 1.50703 * 111.00857 * 153.57267 * 19 18 17 22 22 H 1.08001 * 119.99288 * 359.97438 * 21 19 18 23 23 C 1.37870 * 120.00247 * 180.02562 * 21 19 18 24 24 N 1.31517 * 120.00213 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99926 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47125 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.46696 * 299.99284 * 25 23 21 28 28 H 1.48496 * 109.47288 * 59.99538 * 25 23 21 29 29 C 1.47419 * 125.65413 * 180.02562 * 16 14 12 30 30 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47225 * 299.99726 * 1 2 3 32 32 H 1.09000 * 109.47248 * 59.99949 * 1 2 3 33 33 H 0.96699 * 113.99956 * 60.00270 * 4 2 1 34 34 H 1.09011 * 109.47070 * 65.78493 * 5 2 1 35 35 H 1.09004 * 109.47458 * 305.79365 * 5 2 1 36 36 H 1.09008 * 110.85507 * 100.19542 * 8 6 5 37 37 H 1.09002 * 110.52113 * 336.97267 * 8 6 5 38 38 H 1.08990 * 111.00821 * 277.23346 * 9 8 6 39 39 H 1.09004 * 111.00413 * 153.37793 * 9 8 6 40 40 H 1.09003 * 110.36014 * 204.15104 * 10 9 8 41 41 H 1.08997 * 110.46457 * 81.87539 * 10 9 8 42 42 H 1.09003 * 109.88536 * 59.57669 * 17 16 14 43 43 H 1.09000 * 109.88826 * 298.40615 * 17 16 14 44 44 H 1.08995 * 110.72322 * 219.44374 * 18 17 16 45 45 H 1.09002 * 110.71736 * 96.16786 * 18 17 16 46 46 H 0.96706 * 113.99779 * 176.82200 * 20 19 18 47 47 H 0.96995 * 120.00298 * 180.02562 * 24 23 21 48 48 H 1.09000 * 110.36892 * 85.24012 * 29 16 14 49 49 H 1.09004 * 110.36307 * 322.92330 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5630 -0.5966 1.3242 7 1 3.8558 0.4503 1.2434 8 6 4.2156 -1.4105 0.1868 9 6 5.4667 -2.0240 0.8693 10 6 4.9396 -2.2923 2.3011 11 7 4.0486 -1.1550 2.5945 12 6 3.7277 -0.7055 3.8239 13 8 3.0591 0.2998 3.9469 14 6 4.1953 -1.4447 5.0356 15 8 4.8637 -2.4502 4.9126 16 7 3.8740 -0.9955 6.2650 17 6 3.0741 0.2030 6.5571 18 6 2.9456 0.3052 8.0917 19 6 3.2014 -1.1518 8.5596 20 8 2.0123 -1.9380 8.4597 21 6 3.7479 -1.1803 9.9638 22 1 3.9091 -0.2562 10.4992 23 6 4.0429 -2.3856 10.5645 24 7 3.8470 -3.5108 9.9123 25 14 4.7196 -2.4208 12.3052 26 1 4.9527 -3.8283 12.7174 27 1 6.0017 -1.6729 12.3530 28 1 3.7433 -1.7892 13.2288 29 6 4.2673 -1.6236 7.5393 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7210 -0.2701 -1.9979 34 1 1.7637 -1.7746 1.1989 35 1 1.5945 -0.2709 2.1363 36 1 4.5064 -0.7602 -0.6383 37 1 3.5410 -2.1942 -0.1579 38 1 6.2922 -1.3126 0.8839 39 1 5.7619 -2.9529 0.3813 40 1 5.7665 -2.3194 3.0108 41 1 4.3825 -3.2287 2.3329 42 1 2.0854 0.1074 6.1081 43 1 3.5765 1.0883 6.1674 44 1 1.9445 0.6308 8.3741 45 1 3.7004 0.9787 8.4978 46 1 2.1347 -2.8680 8.6951 47 1 4.0542 -4.3588 10.3350 48 1 5.2579 -1.2826 7.8405 49 1 4.2506 -2.7096 7.4480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118184913.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:23 Heat of formation + Delta-G solvation = -185.480438 kcal Electronic energy + Delta-G solvation = -31337.972933 eV Core-core repulsion = 27071.134545 eV Total energy + Delta-G solvation = -4266.838389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02802 -40.55364 -39.10767 -38.81562 -37.94526 -36.12685 -34.18294 -33.46541 -32.66007 -31.97610 -30.66550 -29.75609 -27.76978 -26.75147 -25.88328 -24.10930 -22.79725 -22.39834 -21.56342 -21.33555 -20.09299 -19.19084 -18.41392 -18.24932 -18.01622 -17.54846 -17.07788 -16.89288 -16.47185 -16.21422 -15.56581 -15.39329 -15.25870 -14.91902 -14.76189 -14.69810 -14.52568 -14.28308 -14.09335 -13.85538 -13.51882 -13.49209 -13.38632 -13.36418 -12.91600 -12.83739 -12.76990 -12.62535 -12.54877 -12.33743 -12.28798 -12.13408 -12.05232 -11.84599 -11.64386 -11.44174 -11.27038 -10.84337 -10.70627 -10.53873 -10.33663 -9.93657 -9.60552 -8.27183 -6.43827 0.31073 1.16682 1.44768 1.45497 1.53517 2.07441 2.31912 2.40838 2.98533 3.11400 3.39221 3.59140 3.70994 3.71883 3.76505 4.04941 4.05870 4.12816 4.14007 4.22689 4.29668 4.35356 4.39497 4.54225 4.62652 4.68443 4.70766 4.79488 4.87681 4.93225 4.95611 4.97766 5.02969 5.08759 5.10122 5.13747 5.15656 5.28353 5.30440 5.33511 5.40363 5.41148 5.73581 6.00562 6.06870 6.26576 6.51988 6.64632 6.89891 6.99803 7.27922 7.36795 8.78981 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.002702 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.943217 B =10360.047952 C =11070.723118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.117 3.883 3 H 0.065 0.935 4 O -0.570 6.570 5 C -0.124 4.124 6 C 0.134 3.866 7 H 0.078 0.922 8 C -0.096 4.096 9 C -0.128 4.128 10 C 0.095 3.905 11 N -0.587 5.587 12 C 0.525 3.475 13 O -0.531 6.531 14 C 0.501 3.499 15 O -0.553 6.553 16 N -0.583 5.583 17 C 0.121 3.879 18 C -0.115 4.115 19 C 0.234 3.766 20 O -0.590 6.590 21 C -0.555 4.555 22 H 0.072 0.928 23 C 0.027 3.973 24 N -0.918 5.918 25 Si 0.968 3.032 26 H -0.285 1.285 27 H -0.269 1.269 28 H -0.270 1.270 29 C 0.105 3.895 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.393 0.607 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.378 0.622 47 H 0.272 0.728 48 H 0.059 0.941 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 6.689 -22.572 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.057 3.943 3 H 0.083 0.917 4 O -0.378 6.378 5 C -0.162 4.162 6 C 0.033 3.967 7 H 0.096 0.904 8 C -0.134 4.134 9 C -0.166 4.166 10 C -0.027 4.027 11 N -0.321 5.321 12 C 0.308 3.692 13 O -0.408 6.408 14 C 0.285 3.715 15 O -0.433 6.433 16 N -0.315 5.315 17 C -0.001 4.001 18 C -0.153 4.153 19 C 0.194 3.806 20 O -0.399 6.399 21 C -0.594 4.594 22 H 0.090 0.910 23 C -0.174 4.174 24 N -0.557 5.557 25 Si 0.793 3.207 26 H -0.210 1.210 27 H -0.194 1.194 28 H -0.195 1.195 29 C -0.018 4.018 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.243 0.757 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.228 0.772 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.867 6.706 -22.298 23.300 hybrid contribution 0.193 -0.723 1.210 1.422 sum -0.674 5.983 -21.088 21.931 Atomic orbital electron populations 1.22468 0.95822 1.02555 1.03192 1.21485 0.93012 0.94933 0.84848 0.91728 1.86534 1.76895 1.58000 1.16404 1.21961 0.94975 1.01536 0.97733 1.21938 0.94129 0.98752 0.81895 0.90415 1.22584 0.95726 0.99738 0.95343 1.22915 0.98098 1.03202 0.92376 1.22671 0.93312 0.88059 0.98685 1.48501 1.46274 1.33023 1.04267 1.19531 0.81315 0.84721 0.83675 1.90689 1.39234 1.24786 1.86105 1.20170 0.81789 0.85382 0.84174 1.90670 1.40258 1.26214 1.86129 1.48663 1.49921 1.27787 1.05096 1.22134 0.95208 0.86370 0.96416 1.22730 1.03302 0.96466 0.92758 1.19850 0.81425 0.87872 0.91496 1.86087 1.36279 1.26100 1.91480 1.21761 1.44261 0.93733 0.99597 0.90999 1.25839 0.94378 0.95078 1.02119 1.69667 1.48635 0.98275 1.39128 0.85455 0.78936 0.77079 0.79248 1.21027 1.19403 1.19532 1.23106 0.99669 0.97512 0.81475 0.92646 0.92292 0.90155 0.75734 0.91893 0.91776 0.87861 0.89802 0.89963 0.87486 0.90597 0.91556 0.91549 0.89839 0.89684 0.88808 0.77165 0.91876 0.92240 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.53 71.98 0.69 -1.81 16 2 C 0.12 1.75 3.57 30.59 0.11 1.85 16 3 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 4 O -0.57 -6.85 10.79 -148.98 -1.61 -8.45 16 5 C -0.12 -2.73 4.53 30.59 0.14 -2.59 16 6 C 0.13 2.99 2.85 45.34 0.13 3.12 16 7 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 8 C -0.10 -1.55 4.88 31.79 0.16 -1.39 16 9 C -0.13 -2.12 7.09 31.99 0.23 -1.90 16 10 C 0.09 2.45 5.88 86.85 0.51 2.96 16 11 N -0.59 -17.14 3.06 -789.61 -2.42 -19.56 16 12 C 0.52 19.04 7.59 87.27 0.66 19.70 16 13 O -0.53 -19.83 13.31 -3.26 -0.04 -19.88 16 14 C 0.50 21.28 7.88 87.27 0.69 21.96 16 15 O -0.55 -25.13 14.18 -3.26 -0.05 -25.18 16 16 N -0.58 -25.66 3.33 -813.37 -2.71 -28.36 16 17 C 0.12 4.72 5.49 86.73 0.48 5.20 16 18 C -0.11 -4.67 6.13 31.78 0.19 -4.48 16 19 C 0.23 11.59 0.88 -10.15 -0.01 11.58 16 20 O -0.59 -31.39 13.16 -148.98 -1.96 -33.36 16 21 C -0.56 -28.89 8.25 25.60 0.21 -28.68 16 22 H 0.07 3.59 7.76 -2.91 -0.02 3.57 16 23 C 0.03 1.38 5.31 84.65 0.45 1.83 16 24 N -0.92 -49.56 10.74 21.45 0.23 -49.33 16 25 Si 0.97 41.44 29.54 68.60 2.03 43.46 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 29 C 0.10 5.16 5.63 86.86 0.49 5.65 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.39 1.44 9.08 -74.06 -0.67 0.77 16 34 H 0.06 1.50 7.99 -2.38 -0.02 1.48 16 35 H 0.06 1.74 6.87 -2.39 -0.02 1.73 16 36 H 0.10 1.29 8.00 -2.38 -0.02 1.27 16 37 H 0.08 1.42 7.08 -2.39 -0.02 1.40 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 2.28 6.50 -2.39 -0.02 2.27 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 43 H 0.08 2.94 7.69 -2.39 -0.02 2.92 16 44 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.09 3.48 8.01 -2.39 -0.02 3.46 16 46 H 0.38 20.90 7.01 -74.05 -0.52 20.38 16 47 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 48 H 0.06 2.96 8.03 -2.39 -0.02 2.94 16 49 H 0.05 2.93 7.64 -2.38 -0.02 2.91 16 Total: -1.00 -64.90 385.73 -1.63 -66.53 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: -0.22 Total: 41.13 kcal Atomic # 6 Polarization: 27.89 SS G_CDS: 5.12 Total: 33.00 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -4.89 Total: -97.26 kcal Atomic # 8 Polarization: -83.20 SS G_CDS: -3.66 Total: -86.86 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -64.90 -1.63 -66.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118184913.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.951 kcal (2) G-P(sol) polarization free energy of solvation -64.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds