Wall clock time and date at job start Tue Mar 31 2020 23:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46684 * 2 1 4 4 O 1.42895 * 109.47100 * 239.99560 * 2 1 3 5 5 C 1.53008 * 109.47031 * 119.99504 * 2 1 3 6 6 C 1.52995 * 109.46748 * 183.99050 * 5 2 1 7 7 H 1.09001 * 110.00240 * 306.81678 * 6 5 2 8 8 C 1.54314 * 109.77671 * 67.97235 * 6 5 2 9 9 C 1.55153 * 102.86776 * 141.88196 * 8 6 5 10 10 C 1.54915 * 101.58247 * 324.30538 * 9 8 6 11 11 N 1.47022 * 109.88059 * 185.72041 * 6 5 2 12 12 C 1.34774 * 125.65286 * 61.67498 * 11 6 5 13 13 O 1.21351 * 119.99161 * 4.94628 * 12 11 6 14 14 C 1.49444 * 120.00474 * 184.94100 * 12 11 6 15 15 O 1.21351 * 119.99905 * 0.02562 * 14 12 11 16 16 N 1.34782 * 120.00049 * 180.02562 * 14 12 11 17 17 C 1.47018 * 125.64899 * 359.97438 * 16 14 12 18 18 C 1.54322 * 107.27157 * 178.98676 * 17 16 14 19 19 C 1.55151 * 102.94350 * 337.80677 * 18 17 16 20 20 O 1.42910 * 111.00366 * 277.39078 * 19 18 17 21 21 C 1.50700 * 111.00745 * 153.57939 * 19 18 17 22 22 H 1.08005 * 119.99605 * 4.52786 * 21 19 18 23 23 C 1.37868 * 120.00141 * 184.53309 * 21 19 18 24 24 N 1.31515 * 120.00058 * 4.80692 * 23 21 19 25 25 Si 1.86803 * 120.00145 * 184.81360 * 23 21 19 26 26 H 1.48503 * 109.47027 * 269.99750 * 25 23 21 27 27 H 1.48505 * 109.47043 * 29.99484 * 25 23 21 28 28 H 1.48496 * 109.47398 * 149.99614 * 25 23 21 29 29 C 1.47422 * 125.64714 * 180.02562 * 16 14 12 30 30 H 1.09001 * 109.47136 * 300.00080 * 1 2 3 31 31 H 1.08991 * 109.47380 * 60.00021 * 1 2 3 32 32 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 33 33 H 0.96700 * 114.00205 * 300.00260 * 4 2 1 34 34 H 1.09002 * 109.46734 * 63.99334 * 5 2 1 35 35 H 1.09000 * 109.46765 * 303.99168 * 5 2 1 36 36 H 1.09008 * 110.92084 * 23.46732 * 8 6 5 37 37 H 1.09002 * 110.74629 * 260.21630 * 8 6 5 38 38 H 1.09001 * 111.00471 * 206.23246 * 9 8 6 39 39 H 1.09000 * 111.04119 * 82.38887 * 9 8 6 40 40 H 1.09004 * 110.36435 * 278.17473 * 10 9 8 41 41 H 1.08994 * 110.37141 * 155.84347 * 10 9 8 42 42 H 1.09005 * 109.88641 * 59.56591 * 17 16 14 43 43 H 1.09006 * 110.00735 * 298.47756 * 17 16 14 44 44 H 1.08999 * 110.71900 * 219.44224 * 18 17 16 45 45 H 1.09006 * 110.72056 * 96.17214 * 18 17 16 46 46 H 0.96699 * 114.00052 * 171.79274 * 20 19 18 47 47 H 0.97003 * 120.00045 * 354.81273 * 24 23 21 48 48 H 1.09005 * 110.36671 * 85.24542 * 29 16 14 49 49 H 1.08995 * 110.37013 * 322.91895 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2494 6 6 3.5667 -0.6348 1.3005 7 1 3.9920 -0.9936 0.3632 8 6 3.9989 0.8252 1.5511 9 6 5.2154 0.6672 2.5010 10 6 4.7848 -0.5491 3.3582 11 7 4.0757 -1.4392 2.4209 12 6 3.9243 -2.7707 2.5646 13 8 3.4030 -3.4206 1.6822 14 6 4.3983 -3.4467 3.8102 15 8 4.9193 -2.7966 4.6926 16 7 4.2473 -4.7783 3.9536 17 6 3.6359 -5.6823 2.9684 18 6 3.7050 -7.1095 3.5514 19 6 4.8594 -7.0080 4.5831 20 8 6.1303 -7.1502 3.9453 21 6 4.6929 -8.0257 5.6820 22 1 3.8898 -8.7463 5.6334 23 6 5.5656 -8.0369 6.7492 24 7 6.4845 -7.1022 6.8571 25 14 5.4431 -9.3798 8.0419 26 1 4.5201 -8.9453 9.1211 27 1 4.9236 -10.6227 7.4169 28 1 6.7880 -9.6390 8.6155 29 6 4.6669 -5.5694 5.1246 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7210 -1.5953 -1.2328 34 1 1.7362 -1.7674 1.2143 35 1 1.6194 -0.2502 2.1378 36 1 3.2019 1.3894 2.0356 37 1 4.2973 1.3050 0.6189 38 1 5.3457 1.5549 3.1200 39 1 6.1240 0.4478 1.9402 40 1 4.1165 -0.2315 4.1587 41 1 5.6597 -1.0517 3.7703 42 1 4.1896 -5.6377 2.0306 43 1 2.5966 -5.4010 2.7988 44 1 3.9463 -7.8329 2.7726 45 1 2.7686 -7.3703 4.0448 46 1 6.8834 -6.9699 4.5245 47 1 6.5977 -6.4493 6.1487 48 1 3.8918 -5.5531 5.8909 49 1 5.6054 -5.1861 5.5250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118184914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:26 Heat of formation + Delta-G solvation = -162.630669 kcal Electronic energy + Delta-G solvation = -31435.574573 eV Core-core repulsion = 27169.727025 eV Total energy + Delta-G solvation = -4265.847548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79709 -39.37034 -38.06978 -37.40030 -37.18289 -34.66941 -32.60147 -32.32707 -31.70011 -30.40229 -29.97803 -27.92073 -26.13254 -25.82209 -24.38876 -22.65959 -22.21761 -21.62973 -20.49450 -19.83150 -18.92435 -17.95041 -17.16272 -16.99696 -16.66555 -16.11587 -15.95056 -15.56992 -15.08425 -14.96014 -14.38755 -14.35050 -13.95825 -13.88503 -13.62354 -13.48211 -13.23431 -13.14935 -13.03657 -12.92900 -12.62992 -12.36933 -12.27876 -11.95309 -11.87539 -11.56425 -11.24105 -11.21356 -11.18990 -11.02387 -10.96033 -10.87696 -10.74266 -10.66272 -10.45895 -10.35475 -10.20038 -9.49323 -9.13837 -8.80572 -8.69191 -8.39527 -8.04531 -6.59756 -4.43632 1.70526 2.42482 3.32560 3.36643 3.47982 3.52606 3.61175 4.07873 4.24239 4.33973 4.34785 4.49674 4.59061 4.65776 4.77383 4.87222 4.95486 5.09020 5.12625 5.15811 5.31388 5.38889 5.43956 5.49116 5.55725 5.59650 5.64195 5.64449 5.75287 5.79509 5.81072 5.89400 5.91450 6.00909 6.14669 6.21335 6.23441 6.49223 6.61000 6.66207 6.80071 6.99696 7.22987 7.38210 7.66080 7.76103 7.91091 8.14791 8.32933 8.51739 8.87887 9.28820 10.69626 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.002754 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.036242 B =10164.736897 C =10926.834361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.107 3.893 3 H 0.099 0.901 4 O -0.564 6.564 5 C -0.165 4.165 6 C 0.141 3.859 7 H 0.087 0.913 8 C -0.128 4.128 9 C -0.137 4.137 10 C 0.101 3.899 11 N -0.593 5.593 12 C 0.525 3.475 13 O -0.517 6.517 14 C 0.510 3.490 15 O -0.532 6.532 16 N -0.575 5.575 17 C 0.112 3.888 18 C -0.114 4.114 19 C 0.228 3.772 20 O -0.579 6.579 21 C -0.610 4.610 22 H 0.063 0.937 23 C 0.029 3.971 24 N -0.902 5.902 25 Si 1.077 2.923 26 H -0.285 1.285 27 H -0.286 1.286 28 H -0.282 1.282 29 C 0.081 3.919 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.378 0.622 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.368 0.632 47 H 0.267 0.733 48 H 0.075 0.925 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.260 15.857 -10.611 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.047 3.953 3 H 0.117 0.883 4 O -0.370 6.370 5 C -0.203 4.203 6 C 0.038 3.962 7 H 0.105 0.895 8 C -0.166 4.166 9 C -0.175 4.175 10 C -0.021 4.021 11 N -0.328 5.328 12 C 0.309 3.691 13 O -0.393 6.393 14 C 0.292 3.708 15 O -0.410 6.410 16 N -0.308 5.308 17 C -0.011 4.011 18 C -0.151 4.151 19 C 0.188 3.812 20 O -0.386 6.386 21 C -0.648 4.648 22 H 0.082 0.918 23 C -0.176 4.176 24 N -0.541 5.541 25 Si 0.904 3.096 26 H -0.212 1.212 27 H -0.212 1.212 28 H -0.207 1.207 29 C -0.040 4.040 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.226 0.774 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.217 0.783 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.746 15.745 -9.816 20.106 hybrid contribution -0.682 0.209 -0.707 1.004 sum -8.428 15.954 -10.522 20.887 Atomic orbital electron populations 1.22499 0.96384 1.02777 1.02643 1.21838 0.92783 0.96508 0.84135 0.88347 1.86540 1.77290 1.29460 1.43676 1.22712 0.95576 1.02933 0.99110 1.21602 0.93678 0.90616 0.90322 0.89467 1.22748 0.98431 0.94785 1.00658 1.22868 0.98180 0.98264 0.98173 1.22563 0.97938 0.89964 0.91623 1.48336 1.54315 1.05780 1.24383 1.20006 0.80095 0.81182 0.87834 1.90707 1.43091 1.63374 1.42083 1.19575 0.81567 0.82229 0.87390 1.90699 1.44224 1.63496 1.42630 1.48575 1.56255 1.05104 1.20828 1.22152 0.97527 0.89694 0.91731 1.22629 0.99105 0.94259 0.99151 1.19955 0.81602 0.89514 0.90101 1.86310 1.16338 1.93085 1.42900 1.22305 1.17345 1.17849 1.07349 0.91847 1.26038 0.92545 0.99583 0.99458 1.70980 1.33930 1.14497 1.34717 0.83426 0.76585 0.74646 0.74973 1.21180 1.21176 1.20726 1.23755 1.00597 0.93024 0.86645 0.91616 0.91746 0.92167 0.77397 0.90139 0.90798 0.90414 0.89784 0.89600 0.90485 0.90999 0.88461 0.91060 0.91597 0.90346 0.90140 0.78284 0.91882 0.90679 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 9.53 37.16 0.35 -0.94 16 2 C 0.11 0.87 3.50 -26.73 -0.09 0.78 16 3 H 0.10 0.72 7.39 -51.93 -0.38 0.33 16 4 O -0.56 -5.43 12.74 -35.23 -0.45 -5.88 16 5 C -0.16 -1.62 4.38 -26.73 -0.12 -1.73 16 6 C 0.14 1.54 2.82 -66.96 -0.19 1.35 16 7 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16 8 C -0.13 -1.02 5.57 -24.90 -0.14 -1.16 16 9 C -0.14 -1.17 7.08 -24.58 -0.17 -1.34 16 10 C 0.10 1.24 5.88 -2.52 -0.01 1.22 16 11 N -0.59 -8.25 3.07 -163.52 -0.50 -8.75 16 12 C 0.53 9.07 7.60 -11.59 -0.09 8.99 16 13 O -0.52 -9.32 13.29 5.50 0.07 -9.25 16 14 C 0.51 10.20 7.88 -11.59 -0.09 10.11 16 15 O -0.53 -11.29 14.17 5.50 0.08 -11.21 16 16 N -0.58 -12.07 3.33 -171.03 -0.57 -12.64 16 17 C 0.11 2.14 5.49 -3.07 -0.02 2.13 16 18 C -0.11 -2.32 6.13 -24.90 -0.15 -2.47 16 19 C 0.23 5.50 0.83 -89.63 -0.07 5.43 16 20 O -0.58 -14.53 13.15 -35.23 -0.46 -14.99 16 21 C -0.61 -15.96 8.26 -34.44 -0.28 -16.25 16 22 H 0.06 1.64 7.79 -52.48 -0.41 1.23 16 23 C 0.03 0.77 5.30 -17.82 -0.09 0.67 16 24 N -0.90 -24.96 13.06 55.43 0.72 -24.23 16 25 Si 1.08 23.65 29.91 -169.99 -5.08 18.57 16 26 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 29 C 0.08 1.90 5.33 -2.53 -0.01 1.89 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 2.90 9.05 45.56 0.41 3.31 16 34 H 0.08 0.97 6.87 -51.93 -0.36 0.61 16 35 H 0.07 0.69 8.00 -51.93 -0.42 0.27 16 36 H 0.08 0.52 7.76 -51.92 -0.40 0.12 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.40 6.49 -51.93 -0.34 1.06 16 42 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 43 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 44 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 45 H 0.08 1.55 8.03 -51.93 -0.42 1.13 16 46 H 0.37 9.21 6.75 45.56 0.31 9.52 16 47 H 0.27 7.26 3.63 -40.82 -0.15 7.11 16 48 H 0.07 1.81 8.03 -51.93 -0.42 1.40 16 49 H 0.08 1.99 6.23 -51.93 -0.32 1.67 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -30.89 383.69 -7.86 -38.74 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -6.26 Total: 15.20 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.19 Total: 8.67 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.35 Total: -45.62 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.76 Total: -41.34 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.08 Total: 18.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.89 -7.86 -38.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118184914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.888 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds