Wall clock time and date at job start Tue Mar 31 2020 23:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46684 * 2 1 4 4 O 1.42895 * 109.47100 * 239.99560 * 2 1 3 5 5 C 1.53008 * 109.47031 * 119.99504 * 2 1 3 6 6 C 1.52995 * 109.46748 * 183.99050 * 5 2 1 7 7 H 1.09001 * 110.00240 * 306.81678 * 6 5 2 8 8 C 1.54314 * 109.77671 * 67.97235 * 6 5 2 9 9 C 1.55153 * 102.86776 * 141.88196 * 8 6 5 10 10 C 1.54915 * 101.58247 * 324.30538 * 9 8 6 11 11 N 1.47022 * 109.88059 * 185.72041 * 6 5 2 12 12 C 1.34774 * 125.65286 * 61.67498 * 11 6 5 13 13 O 1.21351 * 119.99161 * 4.94628 * 12 11 6 14 14 C 1.49444 * 120.00474 * 184.94100 * 12 11 6 15 15 O 1.21351 * 119.99905 * 0.02562 * 14 12 11 16 16 N 1.34782 * 120.00049 * 180.02562 * 14 12 11 17 17 C 1.47018 * 125.64899 * 359.97438 * 16 14 12 18 18 C 1.54322 * 107.27157 * 178.98676 * 17 16 14 19 19 C 1.55151 * 102.94350 * 337.80677 * 18 17 16 20 20 O 1.42910 * 111.00366 * 277.39078 * 19 18 17 21 21 C 1.50700 * 111.00745 * 153.57939 * 19 18 17 22 22 H 1.08005 * 119.99605 * 4.52786 * 21 19 18 23 23 C 1.37868 * 120.00141 * 184.53309 * 21 19 18 24 24 N 1.31515 * 120.00058 * 4.80692 * 23 21 19 25 25 Si 1.86803 * 120.00145 * 184.81360 * 23 21 19 26 26 H 1.48503 * 109.47027 * 269.99750 * 25 23 21 27 27 H 1.48505 * 109.47043 * 29.99484 * 25 23 21 28 28 H 1.48496 * 109.47398 * 149.99614 * 25 23 21 29 29 C 1.47422 * 125.64714 * 180.02562 * 16 14 12 30 30 H 1.09001 * 109.47136 * 300.00080 * 1 2 3 31 31 H 1.08991 * 109.47380 * 60.00021 * 1 2 3 32 32 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 33 33 H 0.96700 * 114.00205 * 300.00260 * 4 2 1 34 34 H 1.09002 * 109.46734 * 63.99334 * 5 2 1 35 35 H 1.09000 * 109.46765 * 303.99168 * 5 2 1 36 36 H 1.09008 * 110.92084 * 23.46732 * 8 6 5 37 37 H 1.09002 * 110.74629 * 260.21630 * 8 6 5 38 38 H 1.09001 * 111.00471 * 206.23246 * 9 8 6 39 39 H 1.09000 * 111.04119 * 82.38887 * 9 8 6 40 40 H 1.09004 * 110.36435 * 278.17473 * 10 9 8 41 41 H 1.08994 * 110.37141 * 155.84347 * 10 9 8 42 42 H 1.09005 * 109.88641 * 59.56591 * 17 16 14 43 43 H 1.09006 * 110.00735 * 298.47756 * 17 16 14 44 44 H 1.08999 * 110.71900 * 219.44224 * 18 17 16 45 45 H 1.09006 * 110.72056 * 96.17214 * 18 17 16 46 46 H 0.96699 * 114.00052 * 171.79274 * 20 19 18 47 47 H 0.97003 * 120.00045 * 354.81273 * 24 23 21 48 48 H 1.09005 * 110.36671 * 85.24542 * 29 16 14 49 49 H 1.08995 * 110.37013 * 322.91895 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2494 6 6 3.5667 -0.6348 1.3005 7 1 3.9920 -0.9936 0.3632 8 6 3.9989 0.8252 1.5511 9 6 5.2154 0.6672 2.5010 10 6 4.7848 -0.5491 3.3582 11 7 4.0757 -1.4392 2.4209 12 6 3.9243 -2.7707 2.5646 13 8 3.4030 -3.4206 1.6822 14 6 4.3983 -3.4467 3.8102 15 8 4.9193 -2.7966 4.6926 16 7 4.2473 -4.7783 3.9536 17 6 3.6359 -5.6823 2.9684 18 6 3.7050 -7.1095 3.5514 19 6 4.8594 -7.0080 4.5831 20 8 6.1303 -7.1502 3.9453 21 6 4.6929 -8.0257 5.6820 22 1 3.8898 -8.7463 5.6334 23 6 5.5656 -8.0369 6.7492 24 7 6.4845 -7.1022 6.8571 25 14 5.4431 -9.3798 8.0419 26 1 4.5201 -8.9453 9.1211 27 1 4.9236 -10.6227 7.4169 28 1 6.7880 -9.6390 8.6155 29 6 4.6669 -5.5694 5.1246 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7210 -1.5953 -1.2328 34 1 1.7362 -1.7674 1.2143 35 1 1.6194 -0.2502 2.1378 36 1 3.2019 1.3894 2.0356 37 1 4.2973 1.3050 0.6189 38 1 5.3457 1.5549 3.1200 39 1 6.1240 0.4478 1.9402 40 1 4.1165 -0.2315 4.1587 41 1 5.6597 -1.0517 3.7703 42 1 4.1896 -5.6377 2.0306 43 1 2.5966 -5.4010 2.7988 44 1 3.9463 -7.8329 2.7726 45 1 2.7686 -7.3703 4.0448 46 1 6.8834 -6.9699 4.5245 47 1 6.5977 -6.4493 6.1487 48 1 3.8918 -5.5531 5.8909 49 1 5.6054 -5.1861 5.5250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118184914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:25 Heat of formation + Delta-G solvation = -186.346964 kcal Electronic energy + Delta-G solvation = -31436.602989 eV Core-core repulsion = 27169.727025 eV Total energy + Delta-G solvation = -4266.875964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.13440 -40.75917 -39.37304 -38.91235 -38.10195 -36.47214 -34.35599 -33.41968 -32.65467 -32.13027 -30.70295 -29.70840 -27.74330 -26.76858 -25.91351 -24.13190 -22.98926 -22.71580 -21.79326 -21.39756 -20.37893 -19.76424 -18.43499 -18.27142 -17.89664 -17.24918 -17.00868 -16.89962 -16.71851 -16.25065 -15.87570 -15.68441 -15.24728 -15.12805 -14.93678 -14.75334 -14.71073 -14.40894 -14.23931 -14.10361 -13.77474 -13.70922 -13.29865 -13.14326 -12.89143 -12.85199 -12.81439 -12.63969 -12.59664 -12.42112 -12.31654 -12.02203 -11.92586 -11.88224 -11.69393 -11.59423 -11.38111 -11.07639 -10.72899 -10.58328 -10.31201 -9.98484 -9.72523 -8.68285 -6.54050 0.22696 1.06970 1.55594 1.62512 1.81065 1.98710 2.23382 2.51928 2.95245 3.02172 3.43941 3.51819 3.52956 3.59583 3.80124 3.81248 3.85137 3.96606 4.08322 4.14974 4.18407 4.34380 4.35540 4.36122 4.44945 4.51210 4.66869 4.69199 4.75384 4.80014 4.83071 4.88701 4.90694 4.95109 5.01606 5.05991 5.06900 5.15205 5.19690 5.23991 5.28584 5.32971 5.75633 5.99296 6.05372 6.14749 6.39855 6.46064 6.76381 6.81001 6.86650 7.26405 8.61625 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.002754 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.036242 B =10164.736897 C =10926.834361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.111 3.889 3 H 0.114 0.886 4 O -0.579 6.579 5 C -0.157 4.157 6 C 0.133 3.867 7 H 0.074 0.926 8 C -0.118 4.118 9 C -0.125 4.125 10 C 0.093 3.907 11 N -0.585 5.585 12 C 0.525 3.475 13 O -0.529 6.529 14 C 0.502 3.498 15 O -0.550 6.550 16 N -0.584 5.584 17 C 0.121 3.879 18 C -0.107 4.107 19 C 0.213 3.787 20 O -0.585 6.585 21 C -0.623 4.623 22 H 0.064 0.936 23 C -0.015 4.015 24 N -0.925 5.925 25 Si 1.121 2.879 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.285 1.285 29 C 0.096 3.904 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.384 0.616 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.364 0.636 47 H 0.260 0.740 48 H 0.062 0.938 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 17.478 -11.472 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.052 3.948 3 H 0.132 0.868 4 O -0.386 6.386 5 C -0.196 4.196 6 C 0.032 3.968 7 H 0.092 0.908 8 C -0.155 4.155 9 C -0.163 4.163 10 C -0.029 4.029 11 N -0.319 5.319 12 C 0.307 3.693 13 O -0.407 6.407 14 C 0.286 3.714 15 O -0.429 6.429 16 N -0.316 5.316 17 C -0.001 4.001 18 C -0.145 4.145 19 C 0.173 3.827 20 O -0.392 6.392 21 C -0.661 4.661 22 H 0.083 0.917 23 C -0.215 4.215 24 N -0.565 5.565 25 Si 0.942 3.058 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.210 1.210 29 C -0.026 4.026 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.212 0.788 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.114 17.410 -10.713 22.382 hybrid contribution -0.239 -0.227 -0.456 0.563 sum -9.353 17.183 -11.169 22.527 Atomic orbital electron populations 1.22464 0.95430 1.02680 1.03394 1.21903 0.93485 0.96690 0.82695 0.86785 1.86515 1.77712 1.30113 1.44293 1.22655 0.94611 1.01792 1.00526 1.21891 0.94432 0.92025 0.88470 0.90833 1.22792 0.98562 0.92563 1.01612 1.22858 0.98346 0.97214 0.97911 1.22714 0.96910 0.90926 0.92371 1.48475 1.53187 1.04850 1.25352 1.19429 0.80727 0.82455 0.86656 1.90693 1.44080 1.63964 1.41936 1.20253 0.80901 0.81869 0.88367 1.90682 1.44759 1.63858 1.43631 1.48610 1.56811 1.05761 1.20409 1.22140 0.98445 0.88615 0.90890 1.22646 0.98055 0.95320 0.98498 1.20159 0.82104 0.89347 0.91087 1.86295 1.16724 1.93147 1.43007 1.22610 1.17298 1.18252 1.07983 0.91750 1.27317 0.92011 1.00658 1.01521 1.71057 1.35146 1.15355 1.34959 0.82869 0.76650 0.72952 0.73328 1.19909 1.19510 1.21027 1.23306 0.98792 0.93291 0.87245 0.90593 0.91235 0.92741 0.76728 0.92629 0.89967 0.88309 0.87805 0.86863 0.90568 0.90557 0.91151 0.91260 0.89608 0.89518 0.88836 0.78753 0.92682 0.92008 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.53 71.98 0.69 -1.45 16 2 C 0.11 1.55 3.50 30.60 0.11 1.66 16 3 H 0.11 1.25 7.39 -2.39 -0.02 1.23 16 4 O -0.58 -10.25 12.74 -148.98 -1.90 -12.14 16 5 C -0.16 -2.81 4.38 30.60 0.13 -2.68 16 6 C 0.13 2.68 2.82 45.34 0.13 2.81 16 7 H 0.07 1.72 7.65 -2.39 -0.02 1.70 16 8 C -0.12 -1.45 5.57 31.78 0.18 -1.28 16 9 C -0.13 -1.81 7.08 31.99 0.23 -1.58 16 10 C 0.09 2.19 5.88 86.86 0.51 2.70 16 11 N -0.59 -15.91 3.07 -789.62 -2.42 -18.33 16 12 C 0.52 18.21 7.60 87.27 0.66 18.88 16 13 O -0.53 -19.04 13.29 -3.25 -0.04 -19.08 16 14 C 0.50 20.58 7.88 87.27 0.69 21.27 16 15 O -0.55 -24.15 14.17 -3.25 -0.05 -24.19 16 16 N -0.58 -24.98 3.33 -813.37 -2.71 -27.69 16 17 C 0.12 4.62 5.49 86.73 0.48 5.09 16 18 C -0.11 -4.34 6.13 31.78 0.19 -4.15 16 19 C 0.21 10.43 0.83 -10.15 -0.01 10.42 16 20 O -0.58 -30.06 13.15 -148.98 -1.96 -32.02 16 21 C -0.62 -32.85 8.26 25.60 0.21 -32.64 16 22 H 0.06 3.31 7.79 -2.91 -0.02 3.28 16 23 C -0.02 -0.80 5.30 84.65 0.45 -0.35 16 24 N -0.92 -52.47 13.06 21.44 0.28 -52.19 16 25 Si 1.12 47.46 29.91 68.60 2.05 49.51 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 29 C 0.10 4.67 5.33 86.86 0.46 5.14 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.38 5.58 9.05 -74.06 -0.67 4.91 16 34 H 0.05 1.30 6.87 -2.39 -0.02 1.28 16 35 H 0.08 1.33 8.00 -2.39 -0.02 1.31 16 36 H 0.10 0.87 7.76 -2.38 -0.02 0.85 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.07 2.06 6.49 -2.39 -0.02 2.04 16 42 H 0.07 2.68 7.58 -2.38 -0.02 2.66 16 43 H 0.09 2.94 7.69 -2.38 -0.02 2.92 16 44 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 45 H 0.09 3.50 8.03 -2.38 -0.02 3.48 16 46 H 0.36 19.02 6.75 -74.06 -0.50 18.52 16 47 H 0.26 14.73 3.63 -92.71 -0.34 14.39 16 48 H 0.06 3.10 8.03 -2.38 -0.02 3.08 16 49 H 0.05 2.76 6.23 -2.39 -0.01 2.75 16 Total: -1.00 -67.82 383.69 -1.39 -69.21 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: 0.24 Total: 43.08 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 5.11 Total: 23.84 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -4.85 Total: -98.20 kcal Atomic # 8 Polarization: -83.50 SS G_CDS: -3.95 Total: -87.44 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.05 Total: 49.51 kcal Total: -67.82 -1.39 -69.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118184914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.137 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds