Wall clock time and date at job start Tue Mar 31 2020 23:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46769 * 2 1 4 4 C 1.52994 * 109.47155 * 240.00256 * 2 1 3 5 5 C 1.53000 * 109.47140 * 174.99819 * 4 2 1 6 6 H 1.08994 * 110.91148 * 57.13210 * 5 4 2 7 7 C 1.55457 * 110.92315 * 180.74963 * 5 4 2 8 8 C 1.54947 * 100.98961 * 152.22637 * 7 5 4 9 9 O 1.43650 * 105.13275 * 323.60678 * 8 7 5 10 10 C 1.43233 * 109.97542 * 24.42908 * 9 8 7 11 11 N 1.46497 * 109.47403 * 119.99786 * 2 1 3 12 12 C 1.34777 * 120.00438 * 275.00230 * 11 2 1 13 13 O 1.21353 * 119.99672 * 359.97438 * 12 11 2 14 14 C 1.49444 * 120.00492 * 179.97438 * 12 11 2 15 15 O 1.21353 * 119.99836 * 0.02562 * 14 12 11 16 16 N 1.34776 * 120.00280 * 179.97438 * 14 12 11 17 17 C 1.47421 * 125.64896 * 0.03373 * 16 14 12 18 18 C 1.54912 * 104.83398 * 204.08849 * 17 16 14 19 19 C 1.55161 * 101.57934 * 322.98769 * 18 17 16 20 20 O 1.42905 * 110.71752 * 277.13868 * 19 18 17 21 21 C 1.50697 * 110.71926 * 154.04210 * 19 18 17 22 22 H 1.07999 * 120.00249 * 0.02562 * 21 19 18 23 23 C 1.37881 * 119.99763 * 179.97438 * 21 19 18 24 24 N 1.31512 * 120.00019 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 119.99797 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47314 * 60.00060 * 25 23 21 27 27 H 1.48499 * 109.47083 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47059 * 300.00082 * 25 23 21 29 29 C 1.47019 * 125.64823 * 179.71505 * 16 14 12 30 30 H 1.09003 * 109.47105 * 299.99592 * 1 2 3 31 31 H 1.08991 * 109.47330 * 59.99750 * 1 2 3 32 32 H 1.09004 * 109.46688 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47398 * 54.99361 * 4 2 1 34 34 H 1.09002 * 109.46969 * 294.99784 * 4 2 1 35 35 H 1.08999 * 111.05650 * 34.31250 * 7 5 4 36 36 H 1.09001 * 111.18400 * 270.19432 * 7 5 4 37 37 H 1.08996 * 110.31348 * 204.69266 * 8 7 5 38 38 H 1.08998 * 110.39377 * 82.56129 * 8 7 5 39 39 H 1.09002 * 109.83312 * 117.80151 * 10 9 8 40 40 H 1.08996 * 109.82720 * 238.68562 * 10 9 8 41 41 H 0.96999 * 120.00102 * 95.00059 * 11 2 1 42 42 H 1.09007 * 110.36478 * 322.92316 * 17 16 14 43 43 H 1.08997 * 110.36924 * 85.13747 * 17 16 14 44 44 H 1.08997 * 111.00381 * 81.06002 * 18 17 16 45 45 H 1.08996 * 111.00200 * 204.91575 * 18 17 16 46 46 H 0.96698 * 113.99644 * 179.97438 * 20 19 18 47 47 H 0.96999 * 119.99831 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.88735 * 298.39870 * 29 16 14 49 49 H 1.09008 * 109.88263 * 59.56848 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 4.0222 -1.0210 -0.4123 7 6 4.1183 -1.3200 -2.5828 8 6 5.4179 -0.5126 -2.8275 9 8 5.0927 0.8396 -2.4678 10 6 4.0030 0.8500 -1.5384 11 7 2.0184 -0.6905 1.1961 12 6 2.1471 -0.0182 2.3571 13 8 1.8589 1.1593 2.4115 14 6 2.6448 -0.7228 3.5775 15 8 2.9335 -1.9002 3.5230 16 7 2.7740 -0.0503 4.7383 17 6 2.4614 1.3755 4.9447 18 6 3.3205 1.7977 6.1627 19 6 3.2541 0.5244 7.0470 20 8 2.0533 0.5089 7.8215 21 6 4.4640 0.4323 7.9407 22 1 5.2242 1.1984 7.9011 23 6 4.5999 -0.6296 8.8096 24 7 3.6740 -1.5623 8.8581 25 14 6.0993 -0.7434 9.9179 26 1 6.1554 0.4506 10.7990 27 1 6.0075 -1.9697 10.7504 28 1 7.3273 -0.8020 9.0848 29 6 3.2439 -0.6188 6.0102 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -0.2617 -2.1370 34 1 1.7517 -1.7714 -1.2056 35 1 3.4285 -1.2174 -3.4205 36 1 4.3389 -2.3690 -2.3849 37 1 5.7046 -0.5662 -3.8778 38 1 6.2232 -0.8887 -2.1965 39 1 4.3264 1.2883 -0.5942 40 1 3.1731 1.4257 -1.9482 41 1 2.2491 -1.6317 1.1526 42 1 2.7394 1.9560 4.0650 43 1 1.4013 1.5037 5.1635 44 1 4.3462 2.0114 5.8620 45 1 2.8789 2.6525 6.6748 46 1 1.9630 -0.2670 8.3915 47 1 3.7698 -2.3095 9.4691 48 1 2.5681 -1.4101 6.3347 49 1 4.2518 -1.0158 5.8889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118215441.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:33 Heat of formation + Delta-G solvation = -169.574299 kcal Electronic energy + Delta-G solvation = -30799.377531 eV Core-core repulsion = 26533.228884 eV Total energy + Delta-G solvation = -4266.148647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59712 -39.77706 -38.59734 -37.23897 -36.50318 -34.37499 -33.19481 -32.19935 -31.18500 -30.17010 -29.68586 -27.96824 -26.47003 -25.94444 -24.11966 -23.02014 -22.22947 -21.33971 -20.44628 -19.93311 -19.45600 -17.42887 -17.24682 -17.00960 -16.65277 -16.31842 -15.80841 -15.60473 -15.22095 -14.98900 -14.69541 -14.26609 -14.25558 -14.12074 -13.57633 -13.31827 -13.22813 -13.01772 -13.00149 -12.83206 -12.51203 -12.44496 -12.35382 -11.89879 -11.76524 -11.59797 -11.54119 -11.21956 -11.13115 -11.08169 -11.04556 -10.85392 -10.78911 -10.58949 -10.53520 -10.18332 -9.79906 -9.37176 -9.31340 -9.12376 -8.68330 -8.36857 -8.04394 -6.33145 -4.41771 1.74741 2.59126 3.20722 3.26097 3.28411 3.55083 3.57415 3.84571 3.99128 4.22796 4.24600 4.52314 4.57858 4.69509 4.78274 4.85164 4.92323 4.95002 5.06884 5.16045 5.29076 5.37617 5.41034 5.45062 5.48965 5.49551 5.51298 5.63586 5.75426 5.82579 5.86530 5.87985 5.97249 6.03883 6.19051 6.36790 6.49480 6.70026 6.74110 6.77716 6.81475 7.15049 7.20298 7.31249 7.69622 7.84121 7.98519 8.00600 8.39982 8.61796 9.27367 9.40659 10.74653 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.002595 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.239147 B =10789.356254 C =11523.091282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.093 0.907 4 C -0.116 4.116 5 C -0.126 4.126 6 H 0.090 0.910 7 C -0.152 4.152 8 C 0.050 3.950 9 O -0.386 6.386 10 C 0.054 3.946 11 N -0.703 5.703 12 C 0.513 3.487 13 O -0.516 6.516 14 C 0.505 3.495 15 O -0.540 6.540 16 N -0.574 5.574 17 C 0.099 3.901 18 C -0.121 4.121 19 C 0.249 3.751 20 O -0.585 6.585 21 C -0.537 4.537 22 H 0.068 0.932 23 C 0.070 3.930 24 N -0.897 5.897 25 Si 0.906 3.094 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.275 1.275 29 C 0.098 3.902 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.410 0.590 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.386 0.614 47 H 0.272 0.728 48 H 0.070 0.930 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 0.340 -21.379 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.111 0.889 4 C -0.153 4.153 5 C -0.145 4.145 6 H 0.108 0.892 7 C -0.189 4.189 8 C -0.027 4.027 9 O -0.305 6.305 10 C -0.022 4.022 11 N -0.357 5.357 12 C 0.294 3.706 13 O -0.391 6.391 14 C 0.287 3.713 15 O -0.419 6.419 16 N -0.306 5.306 17 C -0.023 4.023 18 C -0.159 4.159 19 C 0.208 3.792 20 O -0.395 6.395 21 C -0.575 4.575 22 H 0.086 0.914 23 C -0.133 4.133 24 N -0.536 5.536 25 Si 0.733 3.267 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.200 1.200 29 C -0.023 4.023 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.247 0.753 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.238 0.762 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.369 1.120 -21.702 21.991 hybrid contribution 0.827 -1.484 1.018 1.981 sum -2.542 -0.364 -20.684 20.843 Atomic orbital electron populations 1.22190 0.94719 1.02501 1.02914 1.21095 0.94429 0.97758 0.83340 0.88914 1.21882 0.93982 1.01894 0.97578 1.22818 0.96466 0.95876 0.99307 0.89159 1.23352 0.97374 1.00424 0.97796 1.23368 0.96652 0.82027 1.00639 1.88408 1.52408 1.26273 1.63428 1.23239 0.89563 0.96186 0.93232 1.45865 1.66274 1.14832 1.08776 1.20411 0.78505 0.86991 0.84692 1.90701 1.48202 1.15426 1.84721 1.19606 0.81269 0.86710 0.83748 1.90721 1.51249 1.15298 1.84647 1.48687 1.60175 1.12409 1.09301 1.22640 0.99927 0.80370 0.99367 1.22830 0.99243 0.99224 0.94623 1.19494 0.84594 0.88023 0.87065 1.86095 1.42513 1.50317 1.60570 1.21499 1.05963 1.08745 1.21312 0.91398 1.25089 0.96859 0.94762 0.96590 1.69561 1.34180 1.11942 1.37953 0.86422 0.82416 0.77609 0.80255 1.19923 1.21053 1.19992 1.23274 0.99376 0.99192 0.80495 0.91635 0.91418 0.92199 0.89659 0.90433 0.90211 0.89734 0.89825 0.92097 0.91290 0.91070 0.75345 0.89509 0.91380 0.90522 0.90273 0.76221 0.91798 0.91208 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.14 1.25 2.49 -67.93 -0.17 1.08 16 3 H 0.09 0.95 6.77 -51.92 -0.35 0.60 16 4 C -0.12 -0.75 4.15 -26.73 -0.11 -0.86 16 5 C -0.13 -0.98 2.92 -88.59 -0.26 -1.24 16 6 H 0.09 0.81 7.76 -51.93 -0.40 0.41 16 7 C -0.15 -0.98 6.62 -24.40 -0.16 -1.14 16 8 C 0.05 0.40 7.78 38.18 0.30 0.69 16 9 O -0.39 -4.27 11.36 -35.23 -0.40 -4.67 16 10 C 0.05 0.51 6.48 37.88 0.25 0.76 16 11 N -0.70 -8.26 4.53 -54.24 -0.25 -8.51 16 12 C 0.51 8.13 7.82 -11.59 -0.09 8.04 16 13 O -0.52 -8.79 13.44 5.49 0.07 -8.72 16 14 C 0.50 9.81 7.91 -11.59 -0.09 9.72 16 15 O -0.54 -11.42 16.80 5.49 0.09 -11.33 16 16 N -0.57 -11.99 3.33 -171.02 -0.57 -12.56 16 17 C 0.10 1.91 6.05 -2.53 -0.02 1.89 16 18 C -0.12 -2.48 6.23 -24.58 -0.15 -2.64 16 19 C 0.25 6.01 0.86 -89.93 -0.08 5.93 16 20 O -0.58 -14.78 13.07 -35.23 -0.46 -15.24 16 21 C -0.54 -13.88 8.12 -34.44 -0.28 -14.16 16 22 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 23 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 24 N -0.90 -23.48 10.97 55.43 0.61 -22.87 16 25 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 C 0.10 2.33 5.54 -3.06 -0.02 2.31 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.44 8.04 -51.93 -0.42 0.03 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.60 7.74 -51.93 -0.40 0.19 16 41 H 0.41 4.48 8.07 -40.82 -0.33 4.15 16 42 H 0.09 1.56 6.16 -51.93 -0.32 1.24 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.39 9.98 6.98 45.56 0.32 10.30 16 47 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.07 1.79 8.07 -51.93 -0.42 1.37 16 49 H 0.07 1.82 7.82 -51.92 -0.41 1.42 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -29.55 393.11 -7.96 -37.50 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -7.34 Total: 14.24 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -0.62 Total: 11.04 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.21 Total: -43.94 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.69 Total: -39.95 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.55 -7.96 -37.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118215441.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.071 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds