Wall clock time and date at job start Tue Mar 31 2020 23:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47171 * 2 1 4 4 N 1.46503 * 109.47054 * 240.00103 * 2 1 3 5 5 C 1.34774 * 120.00103 * 85.00191 * 4 2 1 6 6 O 1.21349 * 120.00292 * 359.97438 * 5 4 2 7 7 C 1.49451 * 120.00218 * 180.02562 * 5 4 2 8 8 O 1.21351 * 119.99851 * 359.97438 * 7 5 4 9 9 N 1.34774 * 120.00218 * 180.02562 * 7 5 4 10 10 C 1.47425 * 125.64664 * 359.97434 * 9 7 5 11 11 C 1.54910 * 104.83065 * 155.90704 * 10 9 7 12 12 C 1.55150 * 101.58256 * 37.00958 * 11 10 9 13 13 O 1.42898 * 110.72346 * 83.03874 * 12 11 10 14 14 C 1.50706 * 110.72197 * 206.13354 * 12 11 10 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 12 11 16 16 C 1.37871 * 120.00436 * 179.72492 * 14 12 11 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47050 * 59.99579 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46492 * 299.99554 * 18 16 14 22 22 C 1.47028 * 125.65056 * 180.02562 * 9 7 5 23 23 C 1.53000 * 109.47100 * 120.00107 * 2 1 3 24 24 H 1.08997 * 109.52282 * 179.97438 * 23 2 1 25 25 C 1.53176 * 109.52450 * 300.12395 * 23 2 1 26 26 C 1.53182 * 109.03522 * 176.82239 * 25 23 2 27 27 C 1.53098 * 109.21225 * 303.11686 * 26 25 23 28 28 O 1.42898 * 109.41492 * 57.57208 * 27 26 25 29 29 C 1.42905 * 114.10034 * 298.84005 * 28 27 26 30 30 H 1.09006 * 109.46877 * 59.99751 * 1 2 3 31 31 H 1.08992 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46803 * 300.00308 * 1 2 3 33 33 H 0.96999 * 119.99877 * 265.00130 * 4 2 1 34 34 H 1.08999 * 110.37003 * 37.07131 * 10 9 7 35 35 H 1.08999 * 110.36912 * 274.74310 * 10 9 7 36 36 H 1.09001 * 111.00633 * 278.93314 * 11 10 9 37 37 H 1.09007 * 111.03589 * 155.09900 * 11 10 9 38 38 H 0.96698 * 114.00303 * 182.43760 * 13 12 11 39 39 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.87781 * 61.60589 * 22 9 7 41 41 H 1.09000 * 109.88058 * 300.44308 * 22 9 7 42 42 H 1.08996 * 109.53923 * 296.75487 * 25 23 2 43 43 H 1.09004 * 109.54028 * 57.02013 * 25 23 2 44 44 H 1.08987 * 109.52571 * 183.17804 * 26 25 23 45 45 H 1.08997 * 109.46781 * 63.01433 * 26 25 23 46 46 H 1.08998 * 109.47814 * 297.59293 * 27 26 25 47 47 H 1.09003 * 109.47659 * 177.55681 * 27 26 25 48 48 H 1.08997 * 109.47811 * 301.17592 * 29 28 27 49 49 H 1.08997 * 109.48027 * 181.14052 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8580 1.1591 -2.4118 7 6 2.6446 -0.7229 -3.5776 8 8 2.9332 -1.9003 -3.5231 9 7 2.7739 -0.0504 -4.7384 10 6 2.4615 1.3755 -4.9446 11 6 3.3207 1.7976 -6.1626 12 6 3.2541 0.5245 -7.0469 13 8 2.0553 0.5111 -7.8245 14 6 4.4661 0.4299 -7.9376 15 1 5.2276 1.1947 -7.8961 16 6 4.6053 -0.6354 -8.8016 17 7 3.6806 -1.5694 -8.8482 18 14 6.1080 -0.7530 -9.9051 19 1 7.3335 -0.8072 -9.0684 20 1 6.0194 -1.9827 -10.7327 21 1 6.1656 0.4374 -10.7911 22 6 3.2487 -0.6176 -6.0090 23 6 2.0399 -0.7213 1.2492 24 1 3.1299 -0.7222 1.2499 25 6 1.5275 -0.0020 2.5007 26 6 1.9777 -0.7778 3.7425 27 6 1.4679 -2.2183 3.6489 28 8 1.9570 -2.8182 2.4477 29 6 1.5276 -2.1639 1.2519 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2489 -1.6318 -1.1527 34 1 2.7396 1.9560 -4.0649 35 1 1.4018 1.5037 -5.1654 36 1 4.3464 2.0112 -5.8619 37 1 2.8798 2.6527 -6.6750 38 1 1.9473 -0.2820 -8.3671 39 1 3.7787 -2.3191 -9.4558 40 1 2.5766 -1.4115 -6.3347 41 1 4.2578 -1.0108 -5.8853 42 1 1.9351 1.0084 2.5331 43 1 0.4387 0.0433 2.4751 44 1 1.5700 -0.3044 4.6355 45 1 3.0665 -0.7795 3.7947 46 1 0.3779 -2.2180 3.6373 47 1 1.8224 -2.7859 4.5092 48 1 0.4385 -2.1631 1.2091 49 1 1.9252 -2.6925 0.3855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118222807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:02 Heat of formation + Delta-G solvation = -189.286628 kcal Electronic energy + Delta-G solvation = -30763.780785 eV Core-core repulsion = 26496.777348 eV Total energy + Delta-G solvation = -4267.003437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98593 -40.82742 -39.86030 -38.93236 -37.33594 -36.14028 -34.43378 -34.19535 -32.57197 -31.90756 -30.04147 -29.74083 -27.76415 -26.28919 -25.98061 -25.08696 -23.69277 -22.22204 -21.53714 -21.12100 -20.40651 -19.17701 -18.84908 -18.07872 -17.43792 -17.29917 -17.04269 -16.95507 -16.72071 -16.30377 -15.91836 -15.81695 -15.57924 -15.32723 -14.84314 -14.80769 -14.71918 -14.59867 -14.03941 -13.94613 -13.60290 -13.57435 -13.49363 -13.42447 -13.04169 -12.85969 -12.68390 -12.53330 -12.36984 -12.33605 -12.30646 -12.16013 -12.07062 -11.85883 -11.60801 -11.23076 -11.22349 -10.74463 -10.55620 -10.42176 -10.32887 -10.30620 -9.76674 -8.28266 -6.43783 0.30307 1.22350 1.43953 1.44259 1.52264 2.08393 2.35785 2.46576 2.89385 2.97945 3.26525 3.62018 3.67259 3.77940 3.78666 4.02573 4.04524 4.13599 4.15024 4.20306 4.25605 4.33788 4.43106 4.50684 4.56872 4.60221 4.70509 4.74071 4.83461 4.88235 4.91265 4.92711 4.95094 5.06543 5.09129 5.09616 5.17373 5.25778 5.29559 5.30381 5.42110 5.42942 5.72427 5.94202 6.03760 6.25162 6.34136 6.57778 6.65001 6.88470 7.27478 7.36756 8.78227 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.002296 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.049467 B =12192.496360 C =12724.907218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 H 0.091 0.909 4 N -0.688 5.688 5 C 0.522 3.478 6 O -0.525 6.525 7 C 0.499 3.501 8 O -0.561 6.561 9 N -0.583 5.583 10 C 0.109 3.891 11 C -0.115 4.115 12 C 0.234 3.766 13 O -0.588 6.588 14 C -0.557 4.557 15 H 0.069 0.931 16 C 0.027 3.973 17 N -0.916 5.916 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.114 3.886 23 C -0.122 4.122 24 H 0.078 0.922 25 C -0.115 4.115 26 C -0.152 4.152 27 C 0.050 3.950 28 O -0.404 6.404 29 C 0.058 3.942 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.379 0.621 39 H 0.272 0.728 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.102 0.898 48 H 0.071 0.929 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 2.800 24.598 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 H 0.109 0.891 4 N -0.342 5.342 5 C 0.303 3.697 6 O -0.401 6.401 7 C 0.283 3.717 8 O -0.442 6.442 9 N -0.315 5.315 10 C -0.012 4.012 11 C -0.153 4.153 12 C 0.194 3.806 13 O -0.397 6.397 14 C -0.595 4.595 15 H 0.087 0.913 16 C -0.174 4.174 17 N -0.556 5.556 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.009 4.009 23 C -0.141 4.141 24 H 0.096 0.904 25 C -0.153 4.153 26 C -0.190 4.190 27 C -0.026 4.026 28 O -0.323 6.323 29 C -0.019 4.019 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.252 0.748 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.230 0.770 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.089 0.911 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.378 3.247 24.868 25.878 hybrid contribution 0.880 -1.345 -1.386 2.122 sum -5.498 1.901 23.483 24.192 Atomic orbital electron populations 1.22314 0.93680 1.03164 1.03324 1.21197 0.95331 0.97167 0.81786 0.89103 1.45957 1.64769 1.15056 1.08443 1.19693 0.78945 0.86660 0.84447 1.90687 1.49184 1.15518 1.84756 1.20337 0.80345 0.86613 0.84438 1.90704 1.51837 1.16458 1.85155 1.48724 1.60667 1.13174 1.08956 1.22643 0.99676 0.79382 0.99509 1.22832 1.00270 0.97887 0.94291 1.19695 0.83846 0.89955 0.87139 1.86090 1.43703 1.47687 1.62245 1.21794 1.06470 1.08903 1.22354 0.91317 1.25810 0.99316 0.94491 0.97797 1.69671 1.35499 1.11976 1.38452 0.85494 0.79324 0.77599 0.78555 1.19761 1.20858 1.19381 1.22816 0.97287 0.98547 0.82211 1.21992 1.01614 0.96101 0.94410 0.90352 1.21702 1.02210 0.99353 0.92011 1.22173 1.01866 0.95909 0.99022 1.22822 0.98818 0.94013 0.86985 1.87942 1.74800 1.54774 1.14754 1.22769 0.99707 0.91856 0.87575 0.93543 0.91302 0.88522 0.74848 0.87633 0.91334 0.89617 0.89082 0.77044 0.91837 0.93955 0.93374 0.90238 0.89669 0.88652 0.91801 0.91998 0.88023 0.91133 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 8.78 71.98 0.63 -1.88 16 2 C 0.15 2.59 2.41 44.99 0.11 2.70 16 3 H 0.09 1.74 7.58 -2.38 -0.02 1.73 16 4 N -0.69 -16.37 4.99 -443.86 -2.22 -18.59 16 5 C 0.52 16.53 7.82 87.27 0.68 17.21 16 6 O -0.52 -17.37 13.44 -3.24 -0.04 -17.42 16 7 C 0.50 19.78 7.91 87.27 0.69 20.47 16 8 O -0.56 -24.59 16.80 -3.25 -0.05 -24.65 16 9 N -0.58 -24.73 3.33 -813.36 -2.71 -27.44 16 10 C 0.11 4.12 6.05 86.86 0.53 4.64 16 11 C -0.11 -4.62 6.22 31.98 0.20 -4.43 16 12 C 0.23 11.47 0.85 -10.35 -0.01 11.46 16 13 O -0.59 -30.23 13.08 -148.98 -1.95 -32.18 16 14 C -0.56 -29.11 8.10 25.60 0.21 -28.91 16 15 H 0.07 3.48 7.76 -2.91 -0.02 3.46 16 16 C 0.03 1.39 5.29 84.65 0.45 1.83 16 17 N -0.92 -49.15 11.00 21.45 0.24 -48.92 16 18 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 C 0.11 5.62 5.52 86.73 0.48 6.10 16 23 C -0.12 -1.72 2.38 -10.70 -0.03 -1.74 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 C -0.12 -1.11 5.04 30.71 0.15 -0.96 16 26 C -0.15 -1.38 6.13 30.69 0.19 -1.20 16 27 C 0.05 0.56 6.84 72.01 0.49 1.05 16 28 O -0.40 -7.24 10.77 -148.98 -1.60 -8.84 16 29 C 0.06 0.89 5.62 72.01 0.41 1.29 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 0.95 6.38 -2.39 -0.02 0.93 16 32 H 0.10 0.97 6.37 -2.39 -0.02 0.96 16 33 H 0.41 9.46 6.39 -92.71 -0.59 8.87 16 34 H 0.11 3.61 6.16 -2.39 -0.01 3.59 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.09 3.27 8.02 -2.39 -0.02 3.25 16 37 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 38 H 0.38 20.19 7.06 -74.06 -0.52 19.67 16 39 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.04 2.28 8.07 -2.39 -0.02 2.26 16 41 H 0.05 2.56 7.81 -2.39 -0.02 2.54 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 0.63 6.29 -2.38 -0.01 0.61 16 44 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 0.91 6.31 -2.39 -0.02 0.90 16 49 H 0.08 1.42 6.61 -2.39 -0.02 1.40 16 Total: -1.00 -63.45 381.63 -1.26 -64.71 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -0.13 Total: 41.98 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 5.18 Total: 27.65 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -4.69 Total: -94.95 kcal Atomic # 8 Polarization: -79.44 SS G_CDS: -3.65 Total: -83.09 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -63.45 -1.26 -64.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118222807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.578 kcal (2) G-P(sol) polarization free energy of solvation -63.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds