Wall clock time and date at job start Tue Mar 31 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99805 * 2 1 4 4 H 1.08992 * 109.45209 * 29.96075 * 3 2 1 5 5 C 1.53045 * 109.45637 * 269.99553 * 3 2 1 6 6 C 1.53196 * 109.30935 * 178.61697 * 5 3 2 7 7 N 1.46917 * 108.77538 * 54.63681 * 6 5 3 8 8 C 1.34777 * 120.63083 * 126.36924 * 7 6 5 9 9 O 1.21355 * 120.00219 * 187.04987 * 8 7 6 10 10 C 1.49453 * 120.00160 * 7.05456 * 8 7 6 11 11 O 1.21355 * 119.99601 * 7.22683 * 10 8 7 12 12 N 1.34776 * 120.00572 * 187.23068 * 10 8 7 13 13 C 1.47019 * 125.64241 * 359.96799 * 12 10 8 14 14 C 1.54328 * 107.26931 * 179.00036 * 13 12 10 15 15 C 1.55155 * 102.94099 * 337.80629 * 14 13 12 16 16 O 1.42900 * 111.00748 * 277.39309 * 15 14 13 17 17 C 1.50700 * 111.00403 * 153.57622 * 15 14 13 18 18 H 1.08003 * 119.99961 * 277.37793 * 17 15 14 19 19 C 1.37873 * 119.99910 * 97.37834 * 17 15 14 20 20 N 1.31514 * 119.99895 * 173.01507 * 19 17 15 21 21 Si 1.86802 * 120.00149 * 353.29218 * 19 17 15 22 22 H 1.48500 * 109.47169 * 94.04138 * 21 19 17 23 23 H 1.48499 * 109.46922 * 214.04096 * 21 19 17 24 24 H 1.48495 * 109.46793 * 334.04354 * 21 19 17 25 25 C 1.47459 * 125.63277 * 179.97438 * 12 10 8 26 26 C 1.46928 * 118.74173 * 306.63729 * 7 6 5 27 27 H 1.08993 * 109.59066 * 293.57504 * 26 7 6 28 28 C 1.53001 * 109.58905 * 173.14495 * 26 7 6 29 29 C 1.52768 * 109.00442 * 53.31513 * 26 7 6 30 30 H 1.09002 * 109.47286 * 299.99996 * 1 2 3 31 31 H 1.08997 * 109.46754 * 60.00345 * 1 2 3 32 32 H 1.09006 * 109.46704 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.49599 * 58.66670 * 5 3 2 34 34 H 1.08999 * 109.49854 * 298.56424 * 5 3 2 35 35 H 1.09001 * 109.58487 * 294.84854 * 6 5 3 36 36 H 1.08997 * 109.70103 * 174.49737 * 6 5 3 37 37 H 1.09005 * 109.88270 * 59.58615 * 13 12 10 38 38 H 1.09000 * 110.01619 * 298.48938 * 13 12 10 39 39 H 1.09006 * 110.72139 * 219.44604 * 14 13 12 40 40 H 1.08996 * 110.71901 * 96.16981 * 14 13 12 41 41 H 0.96694 * 114.00274 * 171.79862 * 16 15 14 42 42 H 0.97001 * 120.00010 * 180.02562 * 20 19 17 43 43 H 1.09003 * 110.35064 * 85.22602 * 25 12 10 44 44 H 1.09006 * 110.40427 * 322.89341 * 25 12 10 45 45 H 1.09004 * 109.46499 * 64.55016 * 28 26 7 46 46 H 1.08995 * 109.47200 * 184.55320 * 28 26 7 47 47 H 1.08998 * 109.47152 * 304.55379 * 28 26 7 48 48 H 1.08991 * 109.56370 * 185.55441 * 29 26 7 49 49 H 1.08996 * 109.38673 * 65.50978 * 29 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3444 1.9992 0.5132 5 6 2.2176 1.7711 -1.4431 6 6 2.8086 3.1845 -1.4393 7 7 4.0308 3.1838 -0.6239 8 6 5.1928 3.6446 -1.1278 9 8 6.2202 3.5220 -0.4937 10 6 5.2160 4.3066 -2.4675 11 8 4.1753 4.5475 -3.0433 12 7 6.3927 4.6360 -3.0362 13 6 7.7215 4.4034 -2.4518 14 6 8.7646 4.9181 -3.4661 15 6 7.9855 4.8951 -4.8076 16 8 7.9941 3.5869 -5.3827 17 6 8.5418 5.9100 -5.7729 18 1 8.2347 6.9433 -5.7065 19 6 9.4427 5.5193 -6.7407 20 7 9.8231 6.3715 -7.6673 21 14 10.1170 3.7772 -6.7404 22 1 9.2938 2.9276 -7.6380 23 1 11.5217 3.7901 -7.2219 24 1 10.0714 3.2291 -5.3610 25 6 6.5600 5.2894 -4.3475 26 6 3.9636 2.6658 0.7494 27 1 3.3373 3.3195 1.3564 28 6 5.3721 2.6034 1.3436 29 6 3.3584 1.2633 0.7230 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2602 1.7785 -1.9641 34 1 2.9030 1.0916 -1.9497 35 1 2.0862 3.8815 -1.0144 36 1 3.0498 3.4847 -2.4590 37 1 7.8685 3.3375 -2.2776 38 1 7.8169 4.9489 -1.5129 39 1 9.6244 4.2495 -3.5080 40 1 9.0755 5.9329 -3.2181 41 1 7.4181 3.4923 -6.1536 42 1 10.4566 6.0965 -8.3484 43 1 6.4805 6.3716 -4.2447 44 1 5.8172 4.9191 -5.0542 45 1 5.7753 3.6125 1.4291 46 1 5.3298 2.1440 2.3311 47 1 6.0146 2.0092 0.6938 48 1 3.2130 0.9093 1.7435 49 1 4.0327 0.5882 0.1962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118250676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:17 Heat of formation + Delta-G solvation = -120.479939 kcal Electronic energy + Delta-G solvation = -31628.092192 eV Core-core repulsion = 27364.072437 eV Total energy + Delta-G solvation = -4264.019755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18888 -39.53319 -38.54829 -37.76390 -36.68393 -34.88936 -32.94001 -32.40900 -32.12659 -30.53686 -28.52875 -28.13933 -26.66017 -26.07645 -24.62995 -23.73890 -22.62471 -21.65906 -20.75860 -19.89881 -19.02087 -17.63723 -17.07604 -16.84745 -16.69802 -16.27445 -15.90182 -15.59626 -15.42828 -15.28653 -15.03220 -14.89297 -14.49266 -14.04543 -13.85274 -13.61457 -13.37083 -12.98566 -12.78486 -12.71157 -12.69523 -12.56863 -12.36987 -12.06137 -11.93145 -11.72942 -11.64085 -11.60394 -11.42991 -11.32480 -10.96441 -10.86695 -10.58646 -10.53531 -10.33811 -10.28830 -9.72928 -9.29237 -8.89924 -8.76440 -8.61884 -8.57443 -8.20867 -6.23642 -4.35898 1.55166 2.32239 3.25599 3.38452 3.40584 3.50371 3.52033 3.73266 4.25256 4.43652 4.46881 4.50777 4.68696 4.74455 4.92578 4.96829 4.98173 4.99509 5.07821 5.08895 5.12331 5.21755 5.33077 5.34267 5.50805 5.53428 5.63594 5.69334 5.72251 5.74312 5.84497 5.90859 5.96339 6.03230 6.09766 6.14120 6.33242 6.43665 6.49337 6.62958 6.73642 6.85317 6.98378 7.04338 7.37188 7.55671 7.80820 8.05160 8.15865 8.54704 8.75257 9.36907 10.85037 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002797 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.049230 B =10009.306346 C =10350.445105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.088 3.912 4 H 0.062 0.938 5 C -0.156 4.156 6 C 0.069 3.931 7 N -0.585 5.585 8 C 0.513 3.487 9 O -0.507 6.507 10 C 0.510 3.490 11 O -0.531 6.531 12 N -0.571 5.571 13 C 0.107 3.893 14 C -0.123 4.123 15 C 0.220 3.780 16 O -0.554 6.554 17 C -0.553 4.553 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.886 5.886 21 Si 0.947 3.053 22 H -0.296 1.296 23 H -0.326 1.326 24 H -0.260 1.260 25 C 0.085 3.915 26 C 0.145 3.855 27 H 0.075 0.925 28 C -0.139 4.139 29 C -0.128 4.128 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.151 0.849 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.368 0.632 42 H 0.267 0.733 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.803 -9.144 16.827 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.030 3.970 4 H 0.080 0.920 5 C -0.194 4.194 6 C -0.052 4.052 7 N -0.320 5.320 8 C 0.296 3.704 9 O -0.382 6.382 10 C 0.294 3.706 11 O -0.412 6.412 12 N -0.302 5.302 13 C -0.015 4.015 14 C -0.161 4.161 15 C 0.179 3.821 16 O -0.362 6.362 17 C -0.590 4.590 18 H 0.101 0.899 19 C -0.133 4.133 20 N -0.520 5.520 21 Si 0.783 3.217 22 H -0.223 1.223 23 H -0.258 1.258 24 H -0.186 1.186 25 C -0.037 4.037 26 C 0.042 3.958 27 H 0.093 0.907 28 C -0.196 4.196 29 C -0.166 4.166 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.168 0.832 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.216 0.784 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.210 -9.302 17.238 24.800 hybrid contribution -0.487 -0.501 -0.505 0.862 sum -15.698 -9.803 16.733 24.950 Atomic orbital electron populations 1.22786 0.81162 1.02698 0.99952 1.87927 1.19576 1.27817 1.95076 1.22183 0.94623 0.84519 0.95674 0.92038 1.22462 1.02174 0.97576 0.97199 1.22918 0.85313 0.95706 1.01300 1.47986 1.09344 1.60654 1.13985 1.20157 0.83668 0.79609 0.86945 1.90804 1.32500 1.55239 1.59649 1.19813 0.83440 0.81003 0.86335 1.90405 1.30506 1.55625 1.64676 1.48507 1.05663 1.55495 1.20533 1.22287 0.81083 1.01379 0.96791 1.23027 0.97430 1.01980 0.93682 1.20248 0.89096 0.81308 0.91399 1.86337 1.67277 1.33949 1.48593 1.21078 1.27663 0.95704 1.14548 0.89946 1.25153 0.95019 0.99273 0.93867 1.69967 1.31803 1.36394 1.13877 0.85667 0.74936 0.82381 0.78720 1.22323 1.25812 1.18589 1.23399 1.00743 0.97611 0.81927 1.21275 0.99073 0.93638 0.81782 0.90692 1.22248 0.93909 1.04110 0.99304 1.22019 0.95678 0.97232 1.01656 0.94115 0.93965 0.89691 0.90426 0.90628 0.91522 0.83222 0.91200 0.91038 0.90087 0.89548 0.78351 0.92353 0.90166 0.90587 0.90809 0.93505 0.90393 0.89933 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.39 -3.84 10.35 -35.23 -0.36 -4.20 16 3 C 0.09 0.80 2.57 -26.68 -0.07 0.73 16 4 H 0.06 0.48 7.78 -51.93 -0.40 0.08 16 5 C -0.16 -1.53 5.70 -26.61 -0.15 -1.68 16 6 C 0.07 0.77 6.03 -3.71 -0.02 0.75 16 7 N -0.58 -7.23 2.98 -165.98 -0.49 -7.73 16 8 C 0.51 7.73 7.61 -11.58 -0.09 7.64 16 9 O -0.51 -7.99 9.59 5.49 0.05 -7.94 16 10 C 0.51 8.66 7.78 -11.58 -0.09 8.57 16 11 O -0.53 -9.38 13.41 5.49 0.07 -9.31 16 12 N -0.57 -10.21 3.33 -171.00 -0.57 -10.78 16 13 C 0.11 1.84 5.49 -3.06 -0.02 1.83 16 14 C -0.12 -2.37 6.05 -24.90 -0.15 -2.52 16 15 C 0.22 4.68 0.71 -89.63 -0.06 4.62 16 16 O -0.55 -11.72 8.13 -35.23 -0.29 -12.01 16 17 C -0.55 -14.10 8.90 -34.44 -0.31 -14.41 16 18 H 0.08 2.28 8.02 -52.48 -0.42 1.86 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.89 -25.68 13.96 55.43 0.77 -24.90 16 21 Si 0.95 22.68 25.08 -169.99 -4.26 18.42 16 22 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.33 -8.12 7.11 56.52 0.40 -7.72 16 24 H -0.26 -6.13 5.39 56.52 0.30 -5.83 16 25 C 0.08 1.63 6.09 -2.52 -0.02 1.61 16 26 C 0.14 1.47 3.48 -67.82 -0.24 1.23 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 C -0.14 -1.50 7.59 37.16 0.28 -1.22 16 29 C -0.13 -1.19 5.00 -26.83 -0.13 -1.32 16 30 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.04 0.26 7.85 -51.93 -0.41 -0.15 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.66 7.85 -51.93 -0.41 0.26 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.15 2.03 4.22 -55.24 -0.23 1.80 16 37 H 0.07 1.22 7.75 -51.93 -0.40 0.82 16 38 H 0.07 1.15 7.55 -51.93 -0.39 0.76 16 39 H 0.08 1.59 7.26 -51.93 -0.38 1.22 16 40 H 0.09 1.61 8.03 -51.93 -0.42 1.20 16 41 H 0.37 6.99 8.59 45.56 0.39 7.38 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 43 H 0.08 1.56 8.00 -51.93 -0.42 1.14 16 44 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 45 H 0.07 0.90 6.84 -51.93 -0.36 0.55 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 1.00 6.66 -51.93 -0.35 0.66 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -30.22 373.52 -6.73 -36.95 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.22 Total: 6.90 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.07 Total: 8.98 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.29 Total: -43.41 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.52 Total: -33.46 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.26 Total: 18.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.22 -6.73 -36.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118250676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.533 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds