Wall clock time and date at job start Tue Mar 31 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99805 * 2 1 4 4 H 1.08992 * 109.45209 * 29.96075 * 3 2 1 5 5 C 1.53045 * 109.45637 * 269.99553 * 3 2 1 6 6 C 1.53196 * 109.30935 * 178.61697 * 5 3 2 7 7 N 1.46917 * 108.77538 * 54.63681 * 6 5 3 8 8 C 1.34777 * 120.63083 * 126.36924 * 7 6 5 9 9 O 1.21355 * 120.00219 * 187.04987 * 8 7 6 10 10 C 1.49453 * 120.00160 * 7.05456 * 8 7 6 11 11 O 1.21355 * 119.99601 * 7.22683 * 10 8 7 12 12 N 1.34776 * 120.00572 * 187.23068 * 10 8 7 13 13 C 1.47019 * 125.64241 * 359.96799 * 12 10 8 14 14 C 1.54328 * 107.26931 * 179.00036 * 13 12 10 15 15 C 1.55155 * 102.94099 * 337.80629 * 14 13 12 16 16 O 1.42900 * 111.00748 * 277.39309 * 15 14 13 17 17 C 1.50700 * 111.00403 * 153.57622 * 15 14 13 18 18 H 1.08003 * 119.99961 * 277.37793 * 17 15 14 19 19 C 1.37873 * 119.99910 * 97.37834 * 17 15 14 20 20 N 1.31514 * 119.99895 * 173.01507 * 19 17 15 21 21 Si 1.86802 * 120.00149 * 353.29218 * 19 17 15 22 22 H 1.48500 * 109.47169 * 94.04138 * 21 19 17 23 23 H 1.48499 * 109.46922 * 214.04096 * 21 19 17 24 24 H 1.48495 * 109.46793 * 334.04354 * 21 19 17 25 25 C 1.47459 * 125.63277 * 179.97438 * 12 10 8 26 26 C 1.46928 * 118.74173 * 306.63729 * 7 6 5 27 27 H 1.08993 * 109.59066 * 293.57504 * 26 7 6 28 28 C 1.53001 * 109.58905 * 173.14495 * 26 7 6 29 29 C 1.52768 * 109.00442 * 53.31513 * 26 7 6 30 30 H 1.09002 * 109.47286 * 299.99996 * 1 2 3 31 31 H 1.08997 * 109.46754 * 60.00345 * 1 2 3 32 32 H 1.09006 * 109.46704 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.49599 * 58.66670 * 5 3 2 34 34 H 1.08999 * 109.49854 * 298.56424 * 5 3 2 35 35 H 1.09001 * 109.58487 * 294.84854 * 6 5 3 36 36 H 1.08997 * 109.70103 * 174.49737 * 6 5 3 37 37 H 1.09005 * 109.88270 * 59.58615 * 13 12 10 38 38 H 1.09000 * 110.01619 * 298.48938 * 13 12 10 39 39 H 1.09006 * 110.72139 * 219.44604 * 14 13 12 40 40 H 1.08996 * 110.71901 * 96.16981 * 14 13 12 41 41 H 0.96694 * 114.00274 * 171.79862 * 16 15 14 42 42 H 0.97001 * 120.00010 * 180.02562 * 20 19 17 43 43 H 1.09003 * 110.35064 * 85.22602 * 25 12 10 44 44 H 1.09006 * 110.40427 * 322.89341 * 25 12 10 45 45 H 1.09004 * 109.46499 * 64.55016 * 28 26 7 46 46 H 1.08995 * 109.47200 * 184.55320 * 28 26 7 47 47 H 1.08998 * 109.47152 * 304.55379 * 28 26 7 48 48 H 1.08991 * 109.56370 * 185.55441 * 29 26 7 49 49 H 1.08996 * 109.38673 * 65.50978 * 29 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3444 1.9992 0.5132 5 6 2.2176 1.7711 -1.4431 6 6 2.8086 3.1845 -1.4393 7 7 4.0308 3.1838 -0.6239 8 6 5.1928 3.6446 -1.1278 9 8 6.2202 3.5220 -0.4937 10 6 5.2160 4.3066 -2.4675 11 8 4.1753 4.5475 -3.0433 12 7 6.3927 4.6360 -3.0362 13 6 7.7215 4.4034 -2.4518 14 6 8.7646 4.9181 -3.4661 15 6 7.9855 4.8951 -4.8076 16 8 7.9941 3.5869 -5.3827 17 6 8.5418 5.9100 -5.7729 18 1 8.2347 6.9433 -5.7065 19 6 9.4427 5.5193 -6.7407 20 7 9.8231 6.3715 -7.6673 21 14 10.1170 3.7772 -6.7404 22 1 9.2938 2.9276 -7.6380 23 1 11.5217 3.7901 -7.2219 24 1 10.0714 3.2291 -5.3610 25 6 6.5600 5.2894 -4.3475 26 6 3.9636 2.6658 0.7494 27 1 3.3373 3.3195 1.3564 28 6 5.3721 2.6034 1.3436 29 6 3.3584 1.2633 0.7230 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2602 1.7785 -1.9641 34 1 2.9030 1.0916 -1.9497 35 1 2.0862 3.8815 -1.0144 36 1 3.0498 3.4847 -2.4590 37 1 7.8685 3.3375 -2.2776 38 1 7.8169 4.9489 -1.5129 39 1 9.6244 4.2495 -3.5080 40 1 9.0755 5.9329 -3.2181 41 1 7.4181 3.4923 -6.1536 42 1 10.4566 6.0965 -8.3484 43 1 6.4805 6.3716 -4.2447 44 1 5.8172 4.9191 -5.0542 45 1 5.7753 3.6125 1.4291 46 1 5.3298 2.1440 2.3311 47 1 6.0146 2.0092 0.6938 48 1 3.2130 0.9093 1.7435 49 1 4.0327 0.5882 0.1962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118250676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:17 Heat of formation + Delta-G solvation = -142.992712 kcal Electronic energy + Delta-G solvation = -31629.068419 eV Core-core repulsion = 27364.072437 eV Total energy + Delta-G solvation = -4264.995982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31963 -40.76125 -39.53221 -39.18167 -37.63583 -36.41607 -34.45220 -33.81721 -32.97787 -32.10635 -30.09227 -29.00096 -27.70081 -27.24475 -25.84581 -24.81210 -23.92308 -22.63233 -21.78437 -21.50809 -20.23272 -19.47743 -18.34033 -17.82871 -17.54166 -17.48284 -17.15743 -17.02111 -16.66803 -16.37562 -16.21340 -16.02226 -15.69774 -15.49152 -14.86671 -14.78762 -14.54295 -14.30469 -14.09997 -14.01073 -13.86593 -13.61115 -13.56876 -13.34775 -13.27066 -13.07096 -12.79554 -12.69452 -12.40900 -12.35933 -12.20514 -12.18067 -12.12843 -12.02092 -11.60047 -11.47396 -11.25327 -10.63079 -10.46783 -10.32531 -9.97465 -9.84969 -9.64633 -8.34089 -6.47177 0.31125 1.16357 1.48222 1.56884 1.81282 2.06387 2.26840 2.46544 2.74776 2.95078 3.08110 3.45284 3.65288 3.75144 3.81289 3.90715 4.02030 4.03029 4.17239 4.24888 4.28448 4.34287 4.37562 4.39159 4.53231 4.55681 4.63315 4.73835 4.76865 4.80665 4.86330 4.88924 4.89519 4.95991 4.97351 5.09137 5.11907 5.19933 5.23469 5.26727 5.32048 5.50049 5.58630 5.98506 6.04065 6.22302 6.25685 6.55833 6.60297 6.87092 6.89936 7.29693 8.78623 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.002797 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.049230 B =10009.306346 C =10350.445105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.090 3.910 4 H 0.083 0.917 5 C -0.150 4.150 6 C 0.070 3.930 7 N -0.578 5.578 8 C 0.512 3.488 9 O -0.518 6.518 10 C 0.507 3.493 11 O -0.540 6.540 12 N -0.579 5.579 13 C 0.121 3.879 14 C -0.121 4.121 15 C 0.217 3.783 16 O -0.556 6.556 17 C -0.545 4.545 18 H 0.050 0.950 19 C 0.024 3.976 20 N -0.934 5.934 21 Si 1.007 2.993 22 H -0.286 1.286 23 H -0.340 1.340 24 H -0.252 1.252 25 C 0.095 3.905 26 C 0.144 3.856 27 H 0.101 0.899 28 C -0.133 4.133 29 C -0.122 4.122 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.378 0.622 42 H 0.267 0.733 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.102 0.898 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 -10.751 19.299 28.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.032 3.968 4 H 0.101 0.899 5 C -0.188 4.188 6 C -0.051 4.051 7 N -0.312 5.312 8 C 0.294 3.706 9 O -0.394 6.394 10 C 0.292 3.708 11 O -0.421 6.421 12 N -0.310 5.310 13 C -0.001 4.001 14 C -0.159 4.159 15 C 0.176 3.824 16 O -0.365 6.365 17 C -0.582 4.582 18 H 0.068 0.932 19 C -0.176 4.176 20 N -0.572 5.572 21 Si 0.841 3.159 22 H -0.213 1.213 23 H -0.273 1.273 24 H -0.177 1.177 25 C -0.027 4.027 26 C 0.042 3.958 27 H 0.119 0.881 28 C -0.190 4.190 29 C -0.160 4.160 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.227 0.773 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.120 0.880 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.244 -10.932 19.738 28.398 hybrid contribution -0.018 0.025 -1.235 1.236 sum -17.262 -10.907 18.503 27.555 Atomic orbital electron populations 1.22977 0.79620 1.03700 1.00929 1.87903 1.21355 1.28196 1.95149 1.22173 0.94867 0.84849 0.94909 0.89922 1.22398 1.02170 0.96075 0.98164 1.22861 0.85155 0.97074 1.00004 1.48111 1.08743 1.59393 1.14965 1.19829 0.84505 0.80166 0.86090 1.90815 1.33023 1.56055 1.59539 1.20319 0.82836 0.80598 0.87092 1.90434 1.30711 1.55663 1.65260 1.48492 1.06329 1.56094 1.20084 1.22161 0.80073 1.01440 0.96473 1.22953 0.97732 1.02321 0.92885 1.20131 0.90557 0.80420 0.91281 1.86290 1.67704 1.33336 1.49125 1.21287 1.26736 0.95376 1.14842 0.93163 1.25871 0.95556 1.02452 0.93732 1.70080 1.33437 1.38374 1.15298 0.84698 0.73564 0.78628 0.78995 1.21300 1.27349 1.17750 1.23049 0.99269 0.97397 0.82997 1.21496 0.99199 0.94627 0.80459 0.88127 1.22120 0.93796 1.02913 1.00151 1.21966 0.95403 0.96073 1.02600 0.92671 0.93395 0.88842 0.89007 0.92726 0.89428 0.85549 0.91143 0.89628 0.90243 0.89346 0.77269 0.92402 0.90763 0.90573 0.92290 0.91046 0.92731 0.88002 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.41 -7.05 10.35 -148.98 -1.54 -8.59 16 3 C 0.09 1.36 2.57 30.62 0.08 1.44 16 4 H 0.08 0.93 7.78 -2.39 -0.02 0.91 16 5 C -0.15 -2.63 5.70 30.68 0.17 -2.46 16 6 C 0.07 1.42 6.03 86.37 0.52 1.94 16 7 N -0.58 -13.16 2.98 -797.39 -2.37 -15.53 16 8 C 0.51 14.75 7.61 87.27 0.66 15.41 16 9 O -0.52 -15.70 9.59 -3.26 -0.03 -15.73 16 10 C 0.51 16.73 7.78 87.27 0.68 17.41 16 11 O -0.54 -18.64 13.41 -3.26 -0.04 -18.69 16 12 N -0.58 -20.17 3.33 -813.29 -2.71 -22.88 16 13 C 0.12 4.00 5.49 86.73 0.48 4.48 16 14 C -0.12 -4.53 6.05 31.78 0.19 -4.34 16 15 C 0.22 9.14 0.71 -10.16 -0.01 9.13 16 16 O -0.56 -22.78 8.13 -148.98 -1.21 -23.99 16 17 C -0.54 -28.27 8.90 25.60 0.23 -28.04 16 18 H 0.05 2.89 8.02 -2.91 -0.02 2.86 16 19 C 0.02 1.31 5.47 84.65 0.46 1.77 16 20 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 21 Si 1.01 46.95 25.08 68.60 1.72 48.67 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.34 -16.59 7.11 99.48 0.71 -15.89 16 24 H -0.25 -11.31 5.39 99.48 0.54 -10.77 16 25 C 0.10 3.63 6.09 86.84 0.53 4.16 16 26 C 0.14 2.50 3.48 44.83 0.16 2.65 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 C -0.13 -2.59 7.59 71.98 0.55 -2.05 16 29 C -0.12 -1.93 5.00 30.53 0.15 -1.78 16 30 H 0.05 0.43 8.08 -2.39 -0.02 0.41 16 31 H 0.05 0.45 7.85 -2.39 -0.02 0.43 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.09 1.35 7.85 -2.38 -0.02 1.33 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.13 3.29 4.22 -54.86 -0.23 3.05 16 37 H 0.07 2.36 7.75 -2.38 -0.02 2.34 16 38 H 0.09 2.62 7.55 -2.39 -0.02 2.61 16 39 H 0.08 3.01 7.26 -2.38 -0.02 3.00 16 40 H 0.09 3.26 8.03 -2.39 -0.02 3.24 16 41 H 0.38 13.84 8.59 -74.06 -0.64 13.20 16 42 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.07 2.91 8.00 -2.39 -0.02 2.89 16 44 H 0.08 2.88 8.04 -2.38 -0.02 2.86 16 45 H 0.06 1.34 6.84 -2.39 -0.02 1.32 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.05 1.33 6.66 -2.39 -0.02 1.32 16 48 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -65.53 373.52 0.12 -65.41 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.07 Total: 25.45 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 6.08 Total: 21.21 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -4.78 Total: -93.74 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -2.83 Total: -67.00 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.72 Total: 48.67 kcal Total: -65.53 0.12 -65.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118250676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.584 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds