Wall clock time and date at job start Tue Mar 31 2020 23:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47120 * 2 1 4 4 O 1.42901 * 109.46928 * 240.00202 * 2 1 3 5 5 C 1.52996 * 109.47069 * 120.00265 * 2 1 3 6 6 H 1.09000 * 109.50948 * 60.10039 * 5 2 1 7 7 C 1.53291 * 109.51149 * 180.25171 * 5 2 1 8 8 N 1.47150 * 108.38735 * 172.22749 * 7 5 2 9 9 C 1.34780 * 120.98668 * 129.44252 * 8 7 5 10 10 O 1.21348 * 119.99807 * 174.98894 * 9 8 7 11 11 C 1.49443 * 119.99673 * 354.98584 * 9 8 7 12 12 O 1.21353 * 119.99838 * 85.34840 * 11 9 8 13 13 N 1.34777 * 120.00258 * 265.34447 * 11 9 8 14 14 C 1.46923 * 120.62979 * 4.77537 * 13 11 9 15 15 C 1.52761 * 109.00983 * 233.58527 * 14 13 11 16 16 C 1.53040 * 109.38017 * 305.58405 * 15 14 13 17 17 C 1.53042 * 109.53746 * 61.24407 * 16 15 14 18 18 H 1.08998 * 109.52822 * 58.59555 * 17 16 15 19 19 C 1.50699 * 109.49755 * 178.68501 * 17 16 15 20 20 H 1.08002 * 120.00185 * 359.83020 * 19 17 16 21 21 C 1.37882 * 119.99964 * 179.83921 * 19 17 16 22 22 N 1.31518 * 119.99543 * 359.97438 * 21 19 17 23 23 Si 1.86794 * 120.00093 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47071 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47236 * 119.99572 * 23 21 19 26 26 H 1.48504 * 109.47146 * 240.00111 * 23 21 19 27 27 C 1.46924 * 120.63071 * 185.05326 * 13 11 9 28 28 C 1.47154 * 118.03218 * 309.46607 * 8 7 5 29 29 C 1.53300 * 108.38727 * 50.53348 * 28 8 7 30 30 O 1.42962 * 109.22127 * 307.69810 * 29 28 8 31 31 H 1.08998 * 109.47499 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46944 * 299.99883 * 1 2 3 33 33 H 1.09005 * 109.47351 * 59.99521 * 1 2 3 34 34 H 0.96696 * 114.00592 * 300.00403 * 4 2 1 35 35 H 1.09002 * 109.68512 * 291.94978 * 7 5 2 36 36 H 1.09007 * 109.68342 * 52.50408 * 7 5 2 37 37 H 1.09004 * 109.58576 * 353.41686 * 14 13 11 38 38 H 1.09005 * 109.59084 * 113.84187 * 14 13 11 39 39 H 1.09000 * 109.56594 * 185.55475 * 15 14 13 40 40 H 1.08996 * 109.38729 * 65.51564 * 15 14 13 41 41 H 1.08996 * 109.46207 * 301.22307 * 16 15 14 42 42 H 1.09005 * 109.44467 * 181.25250 * 16 15 14 43 43 H 0.97004 * 119.99349 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.58885 * 246.15415 * 27 13 11 45 45 H 1.08994 * 109.58944 * 6.44168 * 27 13 11 46 46 H 1.09005 * 109.68441 * 290.81008 * 28 8 7 47 47 H 1.08998 * 109.71419 * 170.27258 * 28 8 7 48 48 H 1.08997 * 109.51253 * 187.77247 * 29 28 8 49 49 H 1.09004 * 109.55137 * 67.64721 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6784 -1.7496 1.2489 7 6 3.5729 -0.7163 1.2533 8 7 4.0353 -1.2450 2.5464 9 6 4.9538 -2.2297 2.6050 10 8 5.3896 -2.5897 3.6788 11 6 5.4354 -2.8780 1.3476 12 8 6.3459 -2.3802 0.7185 13 7 4.8585 -4.0156 0.9122 14 6 3.6886 -4.5739 1.6038 15 6 3.9726 -6.0306 1.9654 16 6 4.3825 -6.7960 0.7051 17 6 5.6595 -6.1824 0.1263 18 1 6.4530 -6.2212 0.8726 19 6 6.0803 -6.9567 -1.0962 20 1 5.4971 -7.8039 -1.4260 21 6 7.2098 -6.5838 -1.7934 22 7 7.9197 -5.5521 -1.3918 23 14 7.7318 -7.5440 -3.3083 24 1 6.7720 -8.6516 -3.5473 25 1 7.7483 -6.6398 -4.4861 26 1 9.0905 -8.1044 -3.0953 27 6 5.3912 -4.7243 -0.2594 28 6 3.4648 -0.6673 3.7736 29 6 1.9371 -0.6746 3.6467 30 8 1.5639 -0.0481 2.4171 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.7210 -1.5951 -1.2331 35 1 3.9443 -1.3465 0.4451 36 1 3.9371 0.3026 1.1219 37 1 3.4953 -4.0043 2.5129 38 1 2.8190 -4.5258 0.9483 39 1 3.0763 -6.4827 2.3901 40 1 4.7813 -6.0713 2.6950 41 1 3.5831 -6.7345 -0.0333 42 1 4.5639 -7.8407 0.9579 43 1 8.7141 -5.2895 -1.8826 44 1 4.6634 -4.6888 -1.0701 45 1 6.3196 -4.2524 -0.5809 46 1 3.8181 0.3567 3.8960 47 1 3.7644 -1.2643 4.6349 48 1 1.4998 -0.1271 4.4817 49 1 1.5752 -1.7028 3.6560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118464078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:54 Heat of formation + Delta-G solvation = -159.539967 kcal Electronic energy + Delta-G solvation = -32286.780905 eV Core-core repulsion = 28021.067379 eV Total energy + Delta-G solvation = -4265.713525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98731 -39.58494 -38.33008 -37.28753 -36.81445 -35.02921 -33.47094 -32.40410 -31.91356 -30.27503 -29.94504 -28.39139 -25.97669 -25.13638 -24.62705 -23.57453 -22.03324 -21.87829 -21.31737 -19.56653 -18.51226 -17.76870 -17.29871 -17.09249 -16.66365 -16.24816 -16.12249 -15.55915 -15.16991 -15.07733 -14.90346 -14.63519 -14.44150 -14.21178 -13.85603 -13.66790 -13.49935 -13.24310 -12.90298 -12.73980 -12.71832 -12.44298 -12.22555 -12.17281 -12.04804 -11.89266 -11.30422 -11.17506 -11.10524 -11.08586 -10.98129 -10.55839 -10.50800 -10.45740 -10.32675 -10.31393 -10.01816 -9.31978 -9.22131 -8.92840 -8.86550 -8.50607 -7.99422 -6.05134 -4.14266 2.23752 2.34202 2.88788 3.15537 3.27984 3.36576 3.39100 3.55131 4.05232 4.29855 4.35744 4.40568 4.46016 4.58982 4.65736 4.81721 4.94721 5.03577 5.04505 5.12113 5.18504 5.25358 5.31563 5.35833 5.45612 5.47874 5.52071 5.59064 5.74763 5.83527 5.85268 6.05743 6.08851 6.21127 6.48158 6.55599 6.67425 6.73178 6.87036 6.93719 6.96775 7.05474 7.32478 7.51535 7.76367 7.80399 7.85943 8.00873 8.27097 8.43722 8.90152 9.52094 11.00490 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003598 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.917189 B = 7780.040455 C = 8453.323231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 H 0.109 0.891 4 O -0.549 6.549 5 C 0.048 3.952 6 H 0.068 0.932 7 C 0.083 3.917 8 N -0.608 5.608 9 C 0.521 3.479 10 O -0.513 6.513 11 C 0.506 3.494 12 O -0.508 6.508 13 N -0.585 5.585 14 C 0.110 3.890 15 C -0.135 4.135 16 C -0.110 4.110 17 C 0.038 3.962 18 H 0.031 0.969 19 C -0.521 4.521 20 H 0.060 0.940 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.112 3.888 28 C 0.074 3.926 29 C 0.052 3.948 30 O -0.370 6.370 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.379 0.621 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.264 0.736 44 H 0.051 0.949 45 H 0.125 0.875 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.671 10.529 7.490 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.053 3.947 3 H 0.127 0.873 4 O -0.355 6.355 5 C -0.011 4.011 6 H 0.086 0.914 7 C -0.040 4.040 8 N -0.345 5.345 9 C 0.305 3.695 10 O -0.387 6.387 11 C 0.287 3.713 12 O -0.383 6.383 13 N -0.319 5.319 14 C -0.014 4.014 15 C -0.173 4.173 16 C -0.147 4.147 17 C 0.019 3.981 18 H 0.049 0.951 19 C -0.559 4.559 20 H 0.079 0.921 21 C -0.140 4.140 22 N -0.518 5.518 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.008 4.008 28 C -0.048 4.048 29 C -0.026 4.026 30 O -0.288 6.288 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.143 0.857 46 H 0.098 0.902 47 H 0.122 0.878 48 H 0.129 0.871 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.577 11.425 7.552 21.502 hybrid contribution 0.281 -1.235 -0.445 1.342 sum -16.295 10.191 7.107 20.491 Atomic orbital electron populations 1.22412 0.95289 1.02728 1.03223 1.21728 0.93811 0.96871 0.82303 0.87277 1.86700 1.77295 1.29614 1.41869 1.23288 0.93151 0.97183 0.87478 0.91400 1.22438 0.94456 1.01705 0.85367 1.48206 1.41363 1.37260 1.07679 1.20880 0.78357 0.79560 0.90728 1.90762 1.55038 1.63445 1.29406 1.19903 0.84282 0.82641 0.84457 1.90841 1.28929 1.63520 1.54969 1.48606 1.29363 1.22928 1.30956 1.21590 0.88163 0.95723 0.95893 1.21875 1.01162 0.94307 0.99942 1.21629 0.99715 0.98738 0.94653 1.19006 0.92040 0.90486 0.96585 0.95095 1.21088 1.09897 1.14015 1.10935 0.92146 1.25066 0.96210 0.95072 0.97676 1.69884 1.16753 1.25585 1.39576 0.86512 0.78537 0.79966 0.82861 1.19761 1.20906 1.20987 1.22496 1.00546 0.94915 0.82809 1.22374 0.93836 1.00226 0.88392 1.23009 0.93559 0.98840 0.87179 1.87909 1.75500 1.52231 1.13202 0.92364 0.90663 0.91561 0.77281 0.87916 0.89743 0.91940 0.91446 0.91928 0.91761 0.93012 0.92699 0.92566 0.93086 0.85745 0.90233 0.87824 0.87141 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.39 37.16 0.35 -0.89 16 2 C 0.11 0.96 3.38 -26.73 -0.09 0.87 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 4 O -0.55 -5.42 12.84 -35.23 -0.45 -5.87 16 5 C 0.05 0.45 2.54 -26.58 -0.07 0.38 16 6 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 7 C 0.08 1.00 5.59 -3.54 -0.02 0.98 16 8 N -0.61 -8.18 3.02 -172.78 -0.52 -8.70 16 9 C 0.52 9.28 5.48 -11.59 -0.06 9.21 16 10 O -0.51 -10.28 16.59 5.50 0.09 -10.19 16 11 C 0.51 10.48 5.52 -11.59 -0.06 10.41 16 12 O -0.51 -12.47 16.53 5.49 0.09 -12.38 16 13 N -0.58 -11.43 2.98 -173.54 -0.52 -11.95 16 14 C 0.11 1.68 6.33 -3.93 -0.02 1.66 16 15 C -0.13 -2.16 6.06 -26.83 -0.16 -2.32 16 16 C -0.11 -2.09 5.11 -26.69 -0.14 -2.23 16 17 C 0.04 0.91 2.25 -91.65 -0.21 0.70 16 18 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.52 -13.69 8.56 -34.44 -0.29 -13.99 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.88 -25.30 11.39 55.43 0.63 -24.67 16 23 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.11 2.58 5.39 -3.71 -0.02 2.56 16 28 C 0.07 0.75 6.62 -3.53 -0.02 0.73 16 29 C 0.05 0.40 6.99 37.31 0.26 0.66 16 30 O -0.37 -3.34 9.71 -35.23 -0.34 -3.68 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.38 2.65 9.05 45.56 0.41 3.07 16 35 H 0.10 1.45 6.20 -51.93 -0.32 1.13 16 36 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.06 0.89 6.31 -51.93 -0.33 0.56 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.12 3.41 5.16 -51.93 -0.27 3.15 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 1.10 7.12 -51.93 -0.37 0.73 16 48 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -33.28 388.16 -8.01 -41.29 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.16 Total: 4.12 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.66 Total: 10.35 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.41 Total: -45.32 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.61 Total: -32.12 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.28 -8.01 -41.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118464078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.252 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds