Wall clock time and date at job start Tue Mar 31 2020 23:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 120.00156 * 2 1 4 4 N 1.46499 * 109.47169 * 124.99698 * 3 2 1 5 5 C 1.34783 * 119.99668 * 81.05933 * 4 3 2 6 6 O 1.21347 * 119.99658 * 183.52554 * 5 4 3 7 7 C 1.49449 * 119.99963 * 3.53259 * 5 4 3 8 8 O 1.21348 * 120.00286 * 354.66919 * 7 5 4 9 9 N 1.34780 * 120.00048 * 174.67393 * 7 5 4 10 10 C 1.47021 * 125.64443 * 359.95571 * 9 7 5 11 11 C 1.54326 * 107.26842 * 181.09355 * 10 9 7 12 12 C 1.55158 * 102.94144 * 22.19577 * 11 10 9 13 13 O 1.42900 * 111.00683 * 82.56958 * 12 11 10 14 14 C 1.50705 * 111.03519 * 206.40848 * 12 11 10 15 15 H 1.08001 * 120.00019 * 356.79412 * 14 12 11 16 16 C 1.37877 * 119.99764 * 176.79114 * 14 12 11 17 17 N 1.31509 * 120.00120 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99761 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47025 * 90.00492 * 18 16 14 20 20 H 1.48503 * 109.47225 * 210.00540 * 18 16 14 21 21 H 1.48501 * 109.47146 * 330.00651 * 18 16 14 22 22 C 1.47418 * 125.65039 * 179.97438 * 9 7 5 23 23 C 1.46493 * 120.00380 * 261.05934 * 4 3 2 24 24 H 1.09001 * 109.47461 * 173.52222 * 23 4 3 25 25 C 1.53000 * 109.47487 * 53.51597 * 23 4 3 26 26 C 1.53008 * 109.47257 * 293.51889 * 23 4 3 27 27 O 1.42902 * 109.47008 * 66.28024 * 26 23 4 28 28 C 1.42892 * 113.99975 * 180.02562 * 27 26 23 29 29 H 1.07993 * 119.99942 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99526 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00258 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.46671 * 4.99947 * 3 2 1 33 33 H 1.08998 * 109.47282 * 245.00192 * 3 2 1 34 34 H 1.09001 * 109.88513 * 300.51114 * 10 9 7 35 35 H 1.09000 * 109.88529 * 61.67794 * 10 9 7 36 36 H 1.08995 * 110.72536 * 263.82930 * 11 10 9 37 37 H 1.08999 * 110.71881 * 140.55355 * 11 10 9 38 38 H 0.96702 * 113.99741 * 186.34581 * 13 12 11 39 39 H 0.96999 * 120.00283 * 179.97438 * 17 16 14 40 40 H 1.09000 * 110.36529 * 36.99959 * 22 9 7 41 41 H 1.09000 * 110.46230 * 274.72413 * 22 9 7 42 42 H 1.08999 * 109.46799 * 60.00202 * 25 23 4 43 43 H 1.08995 * 109.47305 * 180.02562 * 25 23 4 44 44 H 1.09001 * 109.47280 * 300.00735 * 25 23 4 45 45 H 1.08988 * 109.47351 * 186.28652 * 26 23 4 46 46 H 1.09003 * 109.46655 * 306.28895 * 26 23 4 47 47 H 1.09000 * 109.47256 * 300.00420 * 28 27 26 48 48 H 1.08999 * 109.47288 * 60.00264 * 28 27 26 49 49 H 1.09005 * 109.47080 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.1842 0.7065 1.0401 6 8 4.9276 0.6740 1.9986 7 6 4.5886 0.0532 -0.2418 8 8 3.8076 0.0011 -1.1691 9 7 5.8207 -0.4784 -0.3679 10 6 6.8616 -0.4844 0.6705 11 6 8.1050 -1.1724 0.0686 12 6 7.8870 -1.0097 -1.4589 13 8 8.3179 0.2781 -1.9036 14 6 8.5852 -2.1040 -2.2246 15 1 9.1854 -2.8322 -1.6993 16 6 8.4576 -2.1755 -3.5956 17 7 7.7271 -1.2885 -4.2351 18 14 9.3237 -3.5315 -4.5447 19 1 8.4288 -4.7120 -4.6488 20 1 9.6614 -3.0446 -5.9064 21 1 10.5693 -3.9157 -3.8333 22 6 6.3480 -1.1496 -1.5698 23 6 2.6302 2.0385 2.3621 24 1 3.3872 1.8539 3.1244 25 6 1.2735 1.5341 2.8580 26 6 2.5445 3.5402 2.0818 27 8 1.4554 3.7975 1.1931 28 6 1.2869 5.1779 0.8645 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 7.1059 0.5387 0.9564 35 1 6.5142 -1.0417 1.5404 36 1 8.1338 -2.2266 0.3440 37 1 9.0169 -0.6653 0.3841 38 1 8.1133 0.4629 -2.8305 39 1 7.6376 -1.3386 -5.1997 40 1 5.9860 -0.6541 -2.4706 41 1 6.0619 -2.2014 -1.5753 42 1 1.3345 0.4644 3.0578 43 1 1.0028 2.0602 3.7735 44 1 0.5165 1.7188 2.0958 45 1 2.3844 4.0759 3.0173 46 1 3.4743 3.8780 1.6241 47 1 1.1009 5.7480 1.7748 48 1 2.1907 5.5493 0.3815 49 1 0.4404 5.2894 0.1870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118468366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:26 Heat of formation + Delta-G solvation = -138.005587 kcal Electronic energy + Delta-G solvation = -31747.898252 eV Core-core repulsion = 27483.118527 eV Total energy + Delta-G solvation = -4264.779724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08557 -40.38205 -39.08189 -38.87793 -37.42006 -35.99524 -34.57294 -34.21408 -32.46883 -31.94887 -29.72451 -28.25138 -27.80615 -27.31816 -26.45011 -25.47675 -23.82082 -21.65561 -21.41484 -21.23492 -19.98925 -19.14029 -18.39724 -18.37229 -17.36591 -17.31226 -17.08708 -17.02727 -16.56276 -16.32855 -16.25885 -15.75881 -15.71940 -14.99727 -14.87348 -14.69355 -14.55311 -14.19893 -14.06571 -13.98575 -13.58737 -13.51056 -13.35022 -13.23089 -12.99601 -12.83863 -12.71478 -12.59801 -12.40229 -12.34882 -12.23910 -12.11339 -12.10702 -12.05307 -11.95471 -11.24018 -10.73230 -10.64981 -10.46874 -10.32736 -10.11048 -9.92586 -9.54919 -8.26079 -6.42349 0.34591 1.10448 1.42430 1.44904 1.49380 1.55097 2.10882 2.36131 2.45619 2.79505 2.99925 3.15468 3.76823 3.80456 3.94628 4.05649 4.13142 4.14500 4.22093 4.27318 4.31366 4.44128 4.47774 4.53883 4.59356 4.63791 4.64729 4.72605 4.79901 4.89387 4.95249 5.00166 5.01758 5.04571 5.08197 5.20922 5.31059 5.34295 5.36654 5.41967 5.74100 5.74522 5.87362 5.93026 6.04492 6.19265 6.32301 6.58582 6.67061 6.93847 7.27780 7.35434 8.80024 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.002966 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.545934 B = 9437.426822 C = 9775.674644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.169 4.169 3 C 0.128 3.872 4 N -0.564 5.564 5 C 0.510 3.490 6 O -0.536 6.536 7 C 0.498 3.502 8 O -0.541 6.541 9 N -0.585 5.585 10 C 0.121 3.879 11 C -0.115 4.115 12 C 0.234 3.766 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.070 0.930 16 C 0.028 3.972 17 N -0.915 5.915 18 Si 0.965 3.035 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.108 3.892 23 C 0.130 3.870 24 H 0.110 0.890 25 C -0.146 4.146 26 C 0.056 3.944 27 O -0.398 6.398 28 C 0.026 3.974 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.375 0.625 39 H 0.271 0.729 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.041 0.959 47 H 0.057 0.943 48 H 0.036 0.964 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 9.401 13.047 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.007 3.993 4 N -0.296 5.296 5 C 0.293 3.707 6 O -0.413 6.413 7 C 0.282 3.718 8 O -0.421 6.421 9 N -0.317 5.317 10 C -0.001 4.001 11 C -0.153 4.153 12 C 0.194 3.806 13 O -0.396 6.396 14 C -0.593 4.593 15 H 0.088 0.912 16 C -0.173 4.173 17 N -0.554 5.554 18 Si 0.791 3.209 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.014 4.014 23 C 0.029 3.971 24 H 0.127 0.873 25 C -0.204 4.204 26 C -0.021 4.021 27 O -0.318 6.318 28 C -0.070 4.070 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.802 9.366 13.476 22.100 hybrid contribution 0.593 -0.654 -1.626 1.851 sum -14.209 8.712 11.849 20.450 Atomic orbital electron populations 1.23947 0.94646 1.02987 0.98829 1.23046 0.96640 0.97713 1.01381 1.21278 0.92537 0.96910 0.88570 1.47964 1.14827 1.49930 1.16881 1.19988 0.82928 0.80068 0.87717 1.90681 1.52356 1.59764 1.38525 1.20204 0.81794 0.80726 0.89051 1.90668 1.50688 1.58676 1.42037 1.48700 1.12228 1.53568 1.17207 1.22116 0.87016 1.01261 0.89746 1.22719 0.97070 1.01329 0.94154 1.19852 0.87334 0.82125 0.91326 1.86107 1.84007 1.36837 1.32645 1.21767 1.31671 1.13174 0.92721 0.91227 1.25805 0.94813 0.98050 0.98618 1.69754 1.39587 1.36459 1.09619 0.85440 0.78968 0.78920 0.77604 1.20119 1.20897 1.19140 1.23026 0.97612 0.95076 0.85689 1.21581 0.99859 0.90130 0.85574 0.87252 1.21990 0.94870 1.00971 1.02521 1.22922 0.89647 0.94799 0.94775 1.87794 1.50941 1.26640 1.66403 1.22899 1.01798 0.81448 1.00867 0.87571 0.86574 0.90458 0.86067 0.89793 0.91585 0.89935 0.88996 0.89696 0.77516 0.91995 0.92574 0.92716 0.93218 0.89099 0.90914 0.89052 0.94072 0.92458 0.94508 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 13.74 67.78 0.93 -2.49 16 2 C -0.17 -4.58 8.18 25.65 0.21 -4.37 16 3 C 0.13 3.54 4.51 85.64 0.39 3.93 16 4 N -0.56 -15.95 2.38 -803.70 -1.91 -17.86 16 5 C 0.51 18.00 7.60 87.27 0.66 18.67 16 6 O -0.54 -19.52 13.50 -3.24 -0.04 -19.56 16 7 C 0.50 20.68 7.77 87.27 0.68 21.36 16 8 O -0.54 -23.88 12.23 -3.24 -0.04 -23.91 16 9 N -0.58 -25.43 3.33 -813.34 -2.71 -28.13 16 10 C 0.12 4.69 5.49 86.73 0.48 5.16 16 11 C -0.11 -4.67 6.13 31.78 0.19 -4.47 16 12 C 0.23 11.51 0.87 -10.14 -0.01 11.50 16 13 O -0.59 -30.73 13.15 -148.98 -1.96 -32.69 16 14 C -0.56 -28.91 8.26 25.60 0.21 -28.70 16 15 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 16 C 0.03 1.46 5.30 84.66 0.45 1.91 16 17 N -0.92 -49.23 10.72 21.45 0.23 -49.00 16 18 Si 0.97 41.55 29.54 68.60 2.03 43.57 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 C 0.11 5.30 5.50 86.86 0.48 5.78 16 23 C 0.13 2.75 3.15 45.00 0.14 2.89 16 24 H 0.11 2.44 6.92 -2.39 -0.02 2.42 16 25 C -0.15 -2.45 8.48 71.98 0.61 -1.84 16 26 C 0.06 0.97 5.74 71.98 0.41 1.38 16 27 O -0.40 -6.94 7.01 -148.98 -1.04 -7.99 16 28 C 0.03 0.32 11.01 113.37 1.25 1.57 16 29 H 0.11 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.12 1.93 7.84 -2.91 -0.02 1.91 16 31 H 0.08 2.53 7.58 -2.91 -0.02 2.51 16 32 H 0.12 2.85 4.55 -2.39 -0.01 2.84 16 33 H 0.08 2.88 5.57 -2.39 -0.01 2.86 16 34 H 0.07 2.58 7.71 -2.39 -0.02 2.56 16 35 H 0.08 2.93 7.59 -2.39 -0.02 2.91 16 36 H 0.09 3.44 8.03 -2.39 -0.02 3.42 16 37 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.38 20.35 7.32 -74.06 -0.54 19.81 16 39 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.06 3.08 7.47 -2.39 -0.02 3.06 16 41 H 0.05 2.75 8.03 -2.39 -0.02 2.73 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.25 5.91 -2.39 -0.01 1.23 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 47 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -62.29 388.69 2.05 -60.24 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: 0.41 Total: 43.05 kcal Atomic # 6 Polarization: 25.19 SS G_CDS: 7.08 Total: 32.27 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.39 Total: -94.99 kcal Atomic # 8 Polarization: -81.06 SS G_CDS: -3.09 Total: -84.15 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -62.29 2.05 -60.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118468366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.761 kcal (2) G-P(sol) polarization free energy of solvation -62.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds