Wall clock time and date at job start Tue Mar 31 2020 23:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00110 * 2 1 4 4 N 1.46506 * 109.47046 * 125.00224 * 3 2 1 5 5 C 1.34777 * 120.00042 * 83.91132 * 4 3 2 6 6 O 1.21347 * 120.00002 * 174.68329 * 5 4 3 7 7 C 1.49454 * 120.00051 * 354.96080 * 5 4 3 8 8 O 1.21350 * 119.99658 * 354.26267 * 7 5 4 9 9 N 1.34771 * 119.99744 * 174.25924 * 7 5 4 10 10 C 1.47017 * 125.65291 * 359.69538 * 9 7 5 11 11 C 1.54336 * 107.26733 * 178.84665 * 10 9 7 12 12 C 1.55158 * 103.01879 * 338.13936 * 11 10 9 13 13 O 1.42898 * 111.00352 * 277.23356 * 12 11 10 14 14 C 1.50698 * 111.03501 * 153.39541 * 12 11 10 15 15 H 1.08001 * 120.00068 * 272.78351 * 14 12 11 16 16 C 1.37882 * 119.99864 * 92.78493 * 14 12 11 17 17 N 1.31510 * 119.99866 * 176.12713 * 16 14 12 18 18 Si 1.86801 * 120.00203 * 356.12538 * 16 14 12 19 19 H 1.48494 * 109.47075 * 91.55130 * 18 16 14 20 20 H 1.48501 * 109.47266 * 211.55414 * 18 16 14 21 21 H 1.48505 * 109.47020 * 331.55438 * 18 16 14 22 22 C 1.47430 * 125.64456 * 179.97438 * 9 7 5 23 23 C 1.46498 * 119.99880 * 263.91621 * 4 3 2 24 24 H 1.09000 * 109.47478 * 172.57979 * 23 4 3 25 25 C 1.53001 * 109.47393 * 52.58135 * 23 4 3 26 26 C 1.52994 * 109.47171 * 292.57962 * 23 4 3 27 27 O 1.42901 * 109.47302 * 65.76513 * 26 23 4 28 28 C 1.42902 * 114.00091 * 180.02562 * 27 26 23 29 29 H 1.08001 * 120.00344 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99834 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00080 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47124 * 5.00376 * 3 2 1 33 33 H 1.08997 * 109.47589 * 245.00020 * 3 2 1 34 34 H 1.09000 * 109.88304 * 298.39548 * 10 9 7 35 35 H 1.09006 * 109.87959 * 59.55615 * 10 9 7 36 36 H 1.09005 * 110.84713 * 219.67304 * 11 10 9 37 37 H 1.09001 * 110.66462 * 96.52574 * 11 10 9 38 38 H 0.96698 * 114.00334 * 176.70507 * 13 12 11 39 39 H 0.96998 * 120.00239 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.36984 * 322.94086 * 22 9 7 41 41 H 1.09003 * 110.36192 * 85.15132 * 22 9 7 42 42 H 1.09005 * 109.47098 * 300.00133 * 25 23 4 43 43 H 1.08997 * 109.47508 * 59.99640 * 25 23 4 44 44 H 1.08999 * 109.47611 * 180.02562 * 25 23 4 45 45 H 1.09001 * 109.47495 * 185.76441 * 26 23 4 46 46 H 1.09001 * 109.47081 * 305.76351 * 26 23 4 47 47 H 1.09003 * 109.46863 * 300.00086 * 28 27 26 48 48 H 1.09005 * 109.47231 * 59.99591 * 28 27 26 49 49 H 1.09001 * 109.47015 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2072 0.7558 1.0199 6 8 5.0137 0.8608 1.9205 7 6 4.5616 -0.0070 -0.2154 8 8 3.7239 -0.1967 -1.0726 9 7 5.8116 -0.4841 -0.3774 10 6 6.9206 -0.3221 0.5741 11 6 8.1429 -1.0553 -0.0179 12 6 7.5005 -2.0630 -1.0075 13 8 7.0627 -3.2408 -0.3269 14 6 8.4540 -2.4094 -2.1218 15 1 8.4929 -1.7956 -3.0096 16 6 9.2767 -3.5100 -2.0080 17 7 10.0537 -3.8567 -3.0108 18 14 9.2878 -4.5087 -0.4294 19 1 8.2979 -5.6106 -0.5339 20 1 10.6420 -5.0785 -0.2135 21 1 8.9321 -3.6307 0.7143 22 6 6.2949 -1.2499 -1.5408 23 6 2.6051 1.9845 2.3841 24 1 3.3617 1.7912 3.1446 25 6 1.2583 1.4295 2.8519 26 6 2.4840 3.4927 2.1571 27 8 1.4021 3.7542 1.2610 28 6 1.2023 5.1410 0.9800 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 7.1472 0.7363 0.7027 35 1 6.6536 -0.7654 1.5335 36 1 8.6959 -1.5794 0.7616 37 1 8.7919 -0.3566 -0.5459 38 1 6.6094 -3.8781 -0.8956 39 1 10.6328 -4.6307 -2.9306 40 1 5.5159 -1.9203 -1.9038 41 1 6.6128 -0.5738 -2.3344 42 1 0.5017 1.6228 2.0914 43 1 1.3445 0.3550 3.0136 44 1 0.9688 1.9154 3.7837 45 1 2.2957 3.9895 3.1088 46 1 3.4115 3.8710 1.7271 47 1 0.9875 5.6723 1.9073 48 1 2.1032 5.5532 0.5255 49 1 0.3634 5.2555 0.2935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118468367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:29 Heat of formation + Delta-G solvation = -134.773048 kcal Electronic energy + Delta-G solvation = -31690.742919 eV Core-core repulsion = 27426.103368 eV Total energy + Delta-G solvation = -4264.639551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12637 -40.52971 -39.22858 -38.91669 -37.51116 -36.31086 -34.53353 -34.46418 -32.50034 -32.07207 -30.09589 -28.24770 -27.91080 -27.32659 -26.44792 -25.41818 -23.77858 -21.80519 -21.43692 -21.28151 -20.01560 -19.48611 -18.44513 -18.39167 -17.46259 -17.33670 -17.15914 -17.05216 -16.65448 -16.55225 -16.35017 -15.86034 -15.53690 -15.41367 -15.00941 -14.61776 -14.56706 -14.21604 -14.11730 -14.06908 -13.94393 -13.58912 -13.41371 -13.30920 -13.14435 -12.99020 -12.73616 -12.67476 -12.47198 -12.34945 -12.18979 -12.08136 -12.04675 -11.98599 -11.98170 -11.23027 -10.69150 -10.66728 -10.44807 -10.36462 -10.16743 -9.91965 -9.64169 -8.35212 -6.49416 0.32176 1.07997 1.47310 1.49730 1.55021 1.78417 2.07310 2.37034 2.44292 2.80297 2.95127 3.12720 3.44623 3.80103 3.81217 3.94902 4.01971 4.15551 4.21778 4.23952 4.27709 4.38024 4.45838 4.47995 4.54305 4.60703 4.63146 4.65350 4.76094 4.79128 4.89895 4.92878 4.99725 5.00752 5.06114 5.14459 5.18724 5.29795 5.33320 5.35274 5.48900 5.78644 5.90165 5.93008 6.02079 6.19801 6.23375 6.53974 6.58491 6.88029 6.90524 7.27813 8.77600 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002888 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.129937 B = 9692.857061 C = 9954.626596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.165 4.165 3 C 0.137 3.863 4 N -0.565 5.565 5 C 0.508 3.492 6 O -0.535 6.535 7 C 0.506 3.494 8 O -0.533 6.533 9 N -0.583 5.583 10 C 0.121 3.879 11 C -0.121 4.121 12 C 0.217 3.783 13 O -0.559 6.559 14 C -0.545 4.545 15 H 0.050 0.950 16 C 0.027 3.973 17 N -0.934 5.934 18 Si 1.002 2.998 19 H -0.284 1.284 20 H -0.337 1.337 21 H -0.253 1.253 22 C 0.099 3.901 23 C 0.132 3.868 24 H 0.107 0.893 25 C -0.148 4.148 26 C 0.057 3.943 27 O -0.398 6.398 28 C 0.026 3.974 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.379 0.621 39 H 0.268 0.732 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.039 0.961 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.505 16.322 12.389 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C 0.016 3.984 4 N -0.297 5.297 5 C 0.291 3.709 6 O -0.413 6.413 7 C 0.290 3.710 8 O -0.412 6.412 9 N -0.315 5.315 10 C -0.001 4.001 11 C -0.159 4.159 12 C 0.176 3.824 13 O -0.367 6.367 14 C -0.583 4.583 15 H 0.068 0.932 16 C -0.174 4.174 17 N -0.572 5.572 18 Si 0.835 3.165 19 H -0.211 1.211 20 H -0.269 1.269 21 H -0.178 1.178 22 C -0.024 4.024 23 C 0.030 3.970 24 H 0.125 0.875 25 C -0.206 4.206 26 C -0.020 4.020 27 O -0.318 6.318 28 C -0.070 4.070 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.228 0.772 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.341 16.407 12.777 29.090 hybrid contribution 0.620 -0.964 -0.482 1.244 sum -19.721 15.443 12.295 27.903 Atomic orbital electron populations 1.23945 0.94869 1.02803 0.99304 1.23088 0.96394 0.98020 1.00867 1.21146 0.92438 0.96864 0.87967 1.47970 1.13430 1.52666 1.15663 1.20048 0.83320 0.80397 0.87161 1.90712 1.48913 1.60276 1.41400 1.20032 0.81647 0.81519 0.87845 1.90725 1.47336 1.58693 1.44436 1.48446 1.09549 1.51684 1.21868 1.22133 0.85241 1.00846 0.91898 1.22958 0.96508 0.97370 0.99057 1.20124 0.89726 0.82716 0.89799 1.86247 1.76738 1.31826 1.41934 1.21297 1.21246 1.12546 1.03213 0.93160 1.25837 0.93711 0.98154 0.99659 1.70060 1.26280 1.27426 1.33404 0.84816 0.73144 0.77872 0.80638 1.21116 1.26937 1.17803 1.22959 0.97094 0.94744 0.87563 1.21539 0.99332 0.91006 0.85077 0.87491 1.22022 0.95213 1.00620 1.02744 1.22894 0.89873 0.94559 0.94689 1.87795 1.51906 1.26018 1.66050 1.22899 1.01675 0.81229 1.01197 0.86718 0.87898 0.90049 0.86152 0.90149 0.90149 0.91060 0.90229 0.89329 0.77199 0.92324 0.90904 0.90863 0.90741 0.93346 0.89271 0.89404 0.93698 0.92696 0.94268 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 13.52 67.78 0.92 -2.21 16 2 C -0.16 -3.93 7.88 25.65 0.20 -3.73 16 3 C 0.14 3.20 4.53 85.63 0.39 3.59 16 4 N -0.57 -13.85 2.37 -803.72 -1.91 -15.76 16 5 C 0.51 15.70 7.64 87.27 0.67 16.37 16 6 O -0.54 -17.74 13.53 -3.24 -0.04 -17.79 16 7 C 0.51 17.70 7.72 87.27 0.67 18.37 16 8 O -0.53 -19.49 11.84 -3.25 -0.04 -19.53 16 9 N -0.58 -21.36 3.33 -813.38 -2.70 -24.06 16 10 C 0.12 4.22 5.50 86.73 0.48 4.70 16 11 C -0.12 -4.69 5.93 31.79 0.19 -4.50 16 12 C 0.22 9.39 0.70 -10.16 -0.01 9.38 16 13 O -0.56 -23.56 8.46 -148.98 -1.26 -24.82 16 14 C -0.55 -28.65 8.88 25.60 0.23 -28.42 16 15 H 0.05 2.92 8.00 -2.91 -0.02 2.90 16 16 C 0.03 1.46 5.47 84.66 0.46 1.93 16 17 N -0.93 -55.85 13.96 21.45 0.30 -55.55 16 18 Si 1.00 47.07 24.92 68.60 1.71 48.78 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.34 -16.43 7.11 99.48 0.71 -15.72 16 21 H -0.25 -11.45 5.23 99.48 0.52 -10.93 16 22 C 0.10 3.91 6.09 86.85 0.53 4.44 16 23 C 0.13 2.45 3.12 44.99 0.14 2.59 16 24 H 0.11 2.15 6.97 -2.39 -0.02 2.14 16 25 C -0.15 -2.24 8.36 71.98 0.60 -1.64 16 26 C 0.06 0.83 5.74 71.98 0.41 1.25 16 27 O -0.40 -5.80 7.03 -148.98 -1.05 -6.85 16 28 C 0.03 0.25 11.01 113.37 1.25 1.50 16 29 H 0.11 1.65 7.84 -2.91 -0.02 1.63 16 30 H 0.10 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.08 2.42 7.09 -2.91 -0.02 2.40 16 32 H 0.12 2.38 4.63 -2.39 -0.01 2.37 16 33 H 0.08 2.25 5.99 -2.39 -0.01 2.23 16 34 H 0.08 2.57 7.83 -2.39 -0.02 2.55 16 35 H 0.07 2.54 7.45 -2.38 -0.02 2.53 16 36 H 0.08 3.12 6.90 -2.38 -0.02 3.10 16 37 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 38 H 0.38 14.40 8.56 -74.06 -0.63 13.76 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 40 H 0.07 2.89 8.04 -2.39 -0.02 2.87 16 41 H 0.07 2.95 7.99 -2.39 -0.02 2.93 16 42 H 0.07 1.14 5.70 -2.38 -0.01 1.12 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.04 0.39 8.14 -2.38 -0.02 0.37 16 49 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -66.29 381.34 2.27 -64.02 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.14 Total: 27.93 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 7.13 Total: 23.63 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -4.31 Total: -95.37 kcal Atomic # 8 Polarization: -66.59 SS G_CDS: -2.39 Total: -68.98 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.71 Total: 48.78 kcal Total: -66.29 2.27 -64.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118468367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.757 kcal (2) G-P(sol) polarization free energy of solvation -66.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds