Wall clock time and date at job start Tue Mar 31 2020 23:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99807 * 2 1 4 4 N 1.46497 * 109.47151 * 125.00163 * 3 2 1 5 5 C 1.34778 * 120.00037 * 271.46408 * 4 3 2 6 6 O 1.21341 * 120.00381 * 185.26531 * 5 4 3 7 7 C 1.49452 * 119.99709 * 5.26944 * 5 4 3 8 8 O 1.21350 * 120.00084 * 5.70823 * 7 5 4 9 9 N 1.34774 * 119.99866 * 185.70655 * 7 5 4 10 10 C 1.47026 * 125.65142 * 359.69458 * 9 7 5 11 11 C 1.54323 * 107.26896 * 178.84953 * 10 9 7 12 12 C 1.55156 * 103.02037 * 338.13895 * 11 10 9 13 13 O 1.42908 * 111.00614 * 277.23143 * 12 11 10 14 14 C 1.50703 * 111.03908 * 153.40034 * 12 11 10 15 15 H 1.08002 * 119.99466 * 274.43367 * 14 12 11 16 16 C 1.37869 * 120.00552 * 94.43129 * 14 12 11 17 17 N 1.31514 * 120.00271 * 175.78577 * 16 14 12 18 18 Si 1.86803 * 119.99813 * 355.78345 * 16 14 12 19 19 H 1.48498 * 109.47216 * 88.63920 * 18 16 14 20 20 H 1.48503 * 109.46952 * 208.63875 * 18 16 14 21 21 H 1.48502 * 109.47315 * 328.63819 * 18 16 14 22 22 C 1.47424 * 125.64993 * 179.97438 * 9 7 5 23 23 C 1.46498 * 120.00006 * 91.47005 * 4 3 2 24 24 H 1.09002 * 109.47164 * 186.12249 * 23 4 3 25 25 C 1.53001 * 109.47178 * 306.11883 * 23 4 3 26 26 C 1.52995 * 109.47142 * 66.11880 * 23 4 3 27 27 O 1.42891 * 109.47482 * 293.55933 * 26 23 4 28 28 C 1.42900 * 114.00468 * 180.02562 * 27 26 23 29 29 H 1.08005 * 119.99754 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.00450 * 359.72570 * 1 2 3 31 31 H 1.08000 * 120.00415 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47168 * 245.00328 * 3 2 1 33 33 H 1.09002 * 109.46913 * 4.99933 * 3 2 1 34 34 H 1.08999 * 109.87567 * 298.39514 * 10 9 7 35 35 H 1.08998 * 109.88326 * 59.55200 * 10 9 7 36 36 H 1.09001 * 110.85150 * 219.66900 * 11 10 9 37 37 H 1.08997 * 110.67152 * 96.51750 * 11 10 9 38 38 H 0.96695 * 113.99875 * 177.89343 * 13 12 11 39 39 H 0.97004 * 120.00349 * 180.02562 * 17 16 14 40 40 H 1.09001 * 110.37049 * 322.93427 * 22 9 7 41 41 H 1.09008 * 110.36963 * 85.14389 * 22 9 7 42 42 H 1.09002 * 109.46775 * 60.00127 * 25 23 4 43 43 H 1.08996 * 109.47087 * 180.02562 * 25 23 4 44 44 H 1.09004 * 109.47045 * 300.00423 * 25 23 4 45 45 H 1.09005 * 109.47465 * 53.56194 * 26 23 4 46 46 H 1.09006 * 109.47194 * 173.56058 * 26 23 4 47 47 H 1.09004 * 109.46953 * 60.00071 * 28 27 26 48 48 H 1.08997 * 109.47311 * 179.97438 * 28 27 26 49 49 H 1.08996 * 109.47093 * 300.00004 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5848 1.7950 2.3293 6 8 3.3790 1.9069 3.2398 7 6 1.1531 2.1704 2.5361 8 8 0.3386 1.9620 1.6609 9 7 0.7665 2.7404 3.6945 10 6 1.6432 3.0423 4.8355 11 6 0.7716 3.7130 5.9181 12 6 -0.4343 4.2578 5.1080 13 8 -0.1224 5.5176 4.5099 14 6 -1.6637 4.3636 5.9731 15 1 -2.3047 3.5049 6.1078 16 6 -1.9702 5.5565 6.5926 17 7 -3.0856 5.6732 7.2796 18 14 -0.8012 7.0071 6.4563 19 1 -1.1368 7.8015 5.2474 20 1 -0.9315 7.8630 7.6629 21 1 0.5942 6.5101 6.3504 22 6 -0.6067 3.1593 4.0298 23 6 4.3686 0.8556 0.9607 24 1 4.8737 0.8498 1.9266 25 6 4.3494 -0.5625 0.3867 26 6 5.1146 1.7844 0.0006 27 8 4.5439 1.6779 -1.3050 28 6 5.1716 2.5090 -2.2834 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5401 0.9352 0.0045 31 1 1.8501 -0.9353 -0.0004 32 1 2.6212 1.4027 -0.9314 33 1 1.3585 2.1317 0.0896 34 1 2.0764 2.1206 5.2240 35 1 2.4348 3.7240 4.5246 36 1 1.3114 4.5275 6.4011 37 1 0.4418 2.9805 6.6549 38 1 -0.8346 5.8823 3.9669 39 1 -3.3014 6.5126 7.7152 40 1 -1.1047 3.5663 3.1498 41 1 -1.1728 2.3182 4.4302 42 1 3.8444 -0.5567 -0.5792 43 1 5.3723 -0.9170 0.2602 44 1 3.8179 -1.2242 1.0707 45 1 5.0304 2.8131 0.3512 46 1 6.1658 1.4986 -0.0380 47 1 6.2238 2.2379 -2.3693 48 1 4.6811 2.3700 -3.2468 49 1 5.0889 3.5528 -1.9804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118468368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:31 Heat of formation + Delta-G solvation = -131.698671 kcal Electronic energy + Delta-G solvation = -31799.850701 eV Core-core repulsion = 27535.344465 eV Total energy + Delta-G solvation = -4264.506236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.09420 -40.51139 -39.21734 -38.90270 -37.49565 -36.28566 -34.51404 -34.45815 -32.39358 -32.05012 -30.08210 -28.28647 -27.87572 -27.44387 -26.44079 -25.39306 -23.74588 -21.79314 -21.45475 -20.92206 -20.35627 -19.48167 -18.47825 -18.33464 -17.49171 -17.27513 -17.12285 -17.06355 -16.73018 -16.48251 -16.31675 -15.79482 -15.41809 -15.35903 -15.00766 -14.61336 -14.52156 -14.32619 -14.10651 -14.03275 -13.94843 -13.52172 -13.46331 -13.28210 -13.23997 -12.91578 -12.71157 -12.67947 -12.42018 -12.29647 -12.24849 -12.14408 -11.99047 -11.96634 -11.76558 -11.25415 -10.69644 -10.65920 -10.42184 -10.32441 -10.14510 -9.89843 -9.57654 -8.34945 -6.48992 0.36382 1.10525 1.47127 1.55463 1.56974 1.78115 2.11674 2.40814 2.44114 2.80218 2.95452 3.16614 3.44111 3.80340 3.82762 3.98267 4.03178 4.10055 4.24588 4.28123 4.30414 4.38761 4.42449 4.48504 4.54521 4.59277 4.65270 4.66846 4.78604 4.83496 4.90094 4.94138 4.98441 5.02779 5.12282 5.17248 5.19665 5.29977 5.32713 5.40317 5.49265 5.82492 5.83890 6.02002 6.11572 6.20687 6.28046 6.56385 6.60837 6.86879 6.95767 7.27727 8.77914 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.003051 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.868078 B = 9175.935300 C = 9606.414456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.182 4.182 3 C 0.130 3.870 4 N -0.565 5.565 5 C 0.509 3.491 6 O -0.538 6.538 7 C 0.505 3.495 8 O -0.525 6.525 9 N -0.584 5.584 10 C 0.122 3.878 11 C -0.121 4.121 12 C 0.217 3.783 13 O -0.558 6.558 14 C -0.546 4.546 15 H 0.050 0.950 16 C 0.025 3.975 17 N -0.934 5.934 18 Si 1.007 2.993 19 H -0.282 1.282 20 H -0.338 1.338 21 H -0.260 1.260 22 C 0.101 3.899 23 C 0.131 3.869 24 H 0.108 0.892 25 C -0.150 4.150 26 C 0.056 3.944 27 O -0.397 6.397 28 C 0.026 3.974 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.380 0.620 39 H 0.268 0.732 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.096 0.904 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.409 -10.003 -18.768 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.201 4.201 3 C 0.009 3.991 4 N -0.297 5.297 5 C 0.291 3.709 6 O -0.416 6.416 7 C 0.289 3.711 8 O -0.403 6.403 9 N -0.317 5.317 10 C 0.000 4.000 11 C -0.159 4.159 12 C 0.177 3.823 13 O -0.367 6.367 14 C -0.584 4.584 15 H 0.068 0.932 16 C -0.175 4.175 17 N -0.572 5.572 18 Si 0.841 3.159 19 H -0.209 1.209 20 H -0.271 1.271 21 H -0.185 1.185 22 C -0.022 4.022 23 C 0.029 3.971 24 H 0.126 0.874 25 C -0.207 4.207 26 C -0.021 4.021 27 O -0.317 6.317 28 C -0.070 4.070 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.229 0.771 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.115 0.885 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.740 -10.232 -18.481 28.239 hybrid contribution -0.616 1.033 0.267 1.232 sum 18.124 -9.199 -18.214 27.292 Atomic orbital electron populations 1.23979 0.96367 1.01641 0.97499 1.23213 0.96059 0.98255 1.02542 1.21262 0.91676 0.97000 0.89163 1.47970 1.12952 1.59609 1.09132 1.20070 0.88176 0.78901 0.83722 1.90707 1.55044 1.53709 1.42121 1.20030 0.89664 0.79545 0.81873 1.90694 1.54529 1.54062 1.41034 1.48426 1.11290 1.57085 1.14852 1.22095 0.92278 1.00264 0.85364 1.22938 0.95726 1.00124 0.97127 1.20129 0.92966 0.80236 0.89011 1.86203 1.46470 1.36909 1.67083 1.21298 1.08592 0.98308 1.30172 0.93178 1.25858 0.96153 1.02117 0.93372 1.70063 1.25202 1.27612 1.34281 0.84716 0.80252 0.76670 0.74260 1.20859 1.27140 1.18529 1.22924 0.81867 0.98362 0.99008 1.21529 0.80520 0.95141 0.99868 0.87446 1.22065 1.03868 0.93055 1.01724 1.22901 0.97645 0.98517 0.83040 1.87807 1.59059 1.66180 1.18613 1.22896 0.98312 0.93687 0.92142 0.88163 0.88958 0.86622 0.86500 0.89810 0.90193 0.91345 0.90307 0.89471 0.77072 0.92310 0.90712 0.91126 0.90817 0.89282 0.92881 0.93886 0.89450 0.92668 0.88540 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 12.91 67.78 0.88 -2.94 16 2 C -0.18 -4.10 8.70 25.65 0.22 -3.88 16 3 C 0.13 3.02 4.68 85.63 0.40 3.42 16 4 N -0.56 -13.69 2.38 -803.72 -1.91 -15.60 16 5 C 0.51 15.59 7.68 87.27 0.67 16.26 16 6 O -0.54 -17.78 13.52 -3.22 -0.04 -17.82 16 7 C 0.50 17.35 7.73 87.27 0.67 18.02 16 8 O -0.52 -18.31 10.20 -3.25 -0.03 -18.34 16 9 N -0.58 -21.18 3.33 -813.41 -2.71 -23.88 16 10 C 0.12 4.27 5.49 86.73 0.48 4.75 16 11 C -0.12 -4.70 5.99 31.78 0.19 -4.51 16 12 C 0.22 9.35 0.71 -10.16 -0.01 9.34 16 13 O -0.56 -23.25 8.53 -148.98 -1.27 -24.52 16 14 C -0.55 -28.62 8.87 25.60 0.23 -28.39 16 15 H 0.05 2.91 8.01 -2.91 -0.02 2.89 16 16 C 0.03 1.38 5.47 84.65 0.46 1.84 16 17 N -0.93 -55.71 13.96 21.44 0.30 -55.41 16 18 Si 1.01 47.01 24.73 68.60 1.70 48.70 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.34 -16.45 7.11 99.48 0.71 -15.74 16 21 H -0.26 -11.77 5.49 99.48 0.55 -11.22 16 22 C 0.10 3.95 6.09 86.85 0.53 4.48 16 23 C 0.13 2.41 3.14 44.99 0.14 2.55 16 24 H 0.11 2.13 6.96 -2.39 -0.02 2.11 16 25 C -0.15 -2.13 7.80 71.98 0.56 -1.57 16 26 C 0.06 0.85 5.73 71.98 0.41 1.26 16 27 O -0.40 -6.06 6.96 -148.98 -1.04 -7.09 16 28 C 0.03 0.27 11.01 113.37 1.25 1.51 16 29 H 0.10 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.09 2.60 6.46 -2.91 -0.02 2.58 16 31 H 0.12 2.27 6.46 -2.91 -0.02 2.25 16 32 H 0.12 2.41 5.11 -2.39 -0.01 2.39 16 33 H 0.08 2.34 5.42 -2.39 -0.01 2.33 16 34 H 0.08 2.62 7.59 -2.39 -0.02 2.61 16 35 H 0.07 2.41 7.70 -2.39 -0.02 2.39 16 36 H 0.08 3.09 7.05 -2.39 -0.02 3.07 16 37 H 0.09 3.34 8.03 -2.39 -0.02 3.32 16 38 H 0.38 14.29 8.36 -74.06 -0.62 13.67 16 39 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.07 2.90 8.04 -2.39 -0.02 2.89 16 41 H 0.07 2.85 7.99 -2.38 -0.02 2.83 16 42 H 0.07 1.09 6.06 -2.39 -0.01 1.08 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 0.84 7.93 -2.38 -0.02 0.82 16 45 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 47 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -65.06 377.70 2.26 -62.79 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.18 Total: 29.05 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 7.09 Total: 22.14 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -4.32 Total: -94.90 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -2.38 Total: -67.79 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.70 Total: 48.70 kcal Total: -65.06 2.26 -62.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118468368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.905 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds