Wall clock time and date at job start Tue Mar 31 2020 23:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99981 * 2 1 4 4 N 1.46498 * 109.46990 * 125.00704 * 3 2 1 5 5 C 1.34770 * 120.00443 * 81.54708 * 4 3 2 6 6 O 1.21349 * 120.00094 * 183.72608 * 5 4 3 7 7 C 1.49452 * 119.99861 * 3.71679 * 5 4 3 8 8 O 1.21345 * 120.00294 * 3.69655 * 7 5 4 9 9 N 1.34779 * 120.00082 * 183.69292 * 7 5 4 10 10 C 1.47024 * 125.64835 * 359.96055 * 9 7 5 11 11 C 1.54322 * 107.27281 * 181.09728 * 10 9 7 12 12 C 1.55153 * 102.94152 * 22.19075 * 11 10 9 13 13 O 1.42900 * 111.00384 * 82.57684 * 12 11 10 14 14 C 1.50697 * 111.03864 * 206.40962 * 12 11 10 15 15 H 1.07997 * 119.99898 * 113.72260 * 14 12 11 16 16 C 1.37876 * 119.99933 * 293.72454 * 14 12 11 17 17 N 1.31523 * 119.99812 * 187.23321 * 16 14 12 18 18 Si 1.86800 * 120.00347 * 7.23662 * 16 14 12 19 19 H 1.48502 * 109.47318 * 94.61395 * 18 16 14 20 20 H 1.48494 * 109.47103 * 214.61886 * 18 16 14 21 21 H 1.48505 * 109.46649 * 334.61474 * 18 16 14 22 22 C 1.47424 * 125.65188 * 180.02562 * 9 7 5 23 23 C 1.46501 * 119.99470 * 261.54329 * 4 3 2 24 24 H 1.09006 * 109.46909 * 180.02562 * 23 4 3 25 25 C 1.52991 * 109.47422 * 300.00002 * 23 4 3 26 26 C 1.53003 * 109.47291 * 60.00386 * 23 4 3 27 27 O 1.42908 * 109.46710 * 294.99756 * 26 23 4 28 28 C 1.42895 * 113.99577 * 179.97438 * 27 26 23 29 29 H 1.08001 * 119.99654 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99904 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99715 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47204 * 5.00015 * 3 2 1 33 33 H 1.09001 * 109.47061 * 245.00409 * 3 2 1 34 34 H 1.09006 * 109.87986 * 300.51499 * 10 9 7 35 35 H 1.08999 * 109.88315 * 61.67607 * 10 9 7 36 36 H 1.08998 * 110.71696 * 263.82960 * 11 10 9 37 37 H 1.08996 * 110.71935 * 140.55738 * 11 10 9 38 38 H 0.96697 * 114.00034 * 186.35439 * 13 12 11 39 39 H 0.96998 * 119.99687 * 180.02562 * 17 16 14 40 40 H 1.09005 * 110.36197 * 36.99497 * 22 9 7 41 41 H 1.08992 * 110.45714 * 274.72519 * 22 9 7 42 42 H 1.09000 * 109.47604 * 180.02562 * 25 23 4 43 43 H 1.08998 * 109.47540 * 300.00305 * 25 23 4 44 44 H 1.09001 * 109.47471 * 60.00051 * 25 23 4 45 45 H 1.08998 * 109.47175 * 54.99173 * 26 23 4 46 46 H 1.08996 * 109.47569 * 174.99920 * 26 23 4 47 47 H 1.08996 * 109.47641 * 59.99715 * 28 27 26 48 48 H 1.09005 * 109.47023 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.47603 * 299.99679 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1313 5 6 4.1883 0.7148 1.0363 6 8 4.9306 0.6788 1.9956 7 6 4.5985 0.0748 -0.2504 8 8 3.8865 0.1682 -1.2286 9 7 5.7593 -0.6061 -0.3244 10 6 6.7131 -0.7960 0.7782 11 6 7.8998 -1.6110 0.2223 12 6 7.8152 -1.3504 -1.3048 13 8 8.4369 -0.1104 -1.6480 14 6 8.4229 -2.4893 -2.0824 15 1 7.7984 -3.1102 -2.7075 16 6 9.7762 -2.7385 -1.9958 17 7 10.3308 -3.6374 -2.7795 18 14 10.8220 -1.7996 -0.7652 19 1 10.9476 -2.5922 0.4843 20 1 12.1709 -1.5642 -1.3398 21 1 10.1788 -0.4959 -0.4620 22 6 6.2835 -1.2828 -1.5247 23 6 2.6258 2.0293 2.3659 24 1 3.4374 1.9419 3.0884 25 6 2.3724 3.5069 2.0608 26 6 1.3560 1.4033 2.9463 27 8 0.2649 1.6210 2.0495 28 6 -0.9754 1.0722 2.4993 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 7.0635 0.1722 1.1361 35 1 6.2359 -1.3433 1.5911 36 1 7.7747 -2.6717 0.4401 37 1 8.8431 -1.2422 0.6249 38 1 8.3249 0.1426 -2.5745 39 1 11.2828 -3.8131 -2.7182 40 1 6.0537 -0.7022 -2.4182 41 1 5.8677 -2.2868 -1.6082 42 1 2.0990 4.0260 2.9795 43 1 3.2770 3.9529 1.6474 44 1 1.5611 3.5948 1.3382 45 1 1.5077 0.3323 3.0807 46 1 1.1320 1.8623 3.9092 47 1 -1.2480 1.5239 3.4531 48 1 -1.7525 1.2793 1.7635 49 1 -0.8719 -0.0056 2.6242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118468369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:35 Heat of formation + Delta-G solvation = -99.718159 kcal Electronic energy + Delta-G solvation = -31857.400695 eV Core-core repulsion = 27594.281238 eV Total energy + Delta-G solvation = -4263.119457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.88376 -39.22531 -38.13381 -37.56439 -36.22624 -34.48302 -33.94439 -32.43347 -31.29253 -30.44376 -28.46245 -27.71118 -26.67674 -26.23771 -25.43064 -23.97122 -22.36324 -20.60140 -20.26891 -19.75206 -18.95526 -17.52983 -17.34711 -17.05263 -16.44873 -16.26165 -16.14395 -15.51552 -15.48644 -15.04670 -14.67767 -14.54578 -14.35527 -14.18270 -13.52212 -13.43568 -13.32783 -13.14902 -12.86850 -12.81900 -12.62691 -12.44934 -12.27540 -12.09640 -11.81684 -11.72648 -11.49543 -11.33690 -11.30555 -11.06207 -11.00597 -10.92881 -10.60437 -10.36780 -10.07294 -9.93474 -9.33862 -9.03683 -9.01183 -8.78208 -8.75502 -8.53498 -8.16320 -6.24042 -4.35887 1.62690 2.16603 2.60674 3.30846 3.38761 3.42544 3.49874 3.61505 3.66142 4.34885 4.42136 4.59471 4.73864 4.93103 5.01421 5.05368 5.08148 5.08458 5.11902 5.19196 5.21629 5.31718 5.35952 5.38523 5.48074 5.60855 5.67305 5.69605 5.74485 5.88192 5.94492 6.00887 6.06814 6.14356 6.29877 6.37106 6.50659 6.61545 6.69235 6.71210 6.82480 6.90115 7.08571 7.10650 7.43645 7.62036 7.85014 8.15829 8.24544 8.70251 8.88140 9.39646 10.86049 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002905 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.833281 B = 9637.022817 C =10162.104627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.124 3.876 4 N -0.576 5.576 5 C 0.509 3.491 6 O -0.520 6.520 7 C 0.513 3.487 8 O -0.526 6.526 9 N -0.574 5.574 10 C 0.111 3.889 11 C -0.132 4.132 12 C 0.218 3.782 13 O -0.568 6.568 14 C -0.552 4.552 15 H 0.079 0.921 16 C 0.091 3.909 17 N -0.885 5.885 18 Si 0.871 3.129 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.222 1.222 22 C 0.091 3.909 23 C 0.137 3.863 24 H 0.114 0.886 25 C -0.157 4.157 26 C 0.055 3.945 27 O -0.376 6.376 28 C 0.033 3.967 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.364 0.636 39 H 0.267 0.733 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.084 0.916 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.114 11.213 11.183 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.164 4.164 3 C 0.003 3.997 4 N -0.309 5.309 5 C 0.292 3.708 6 O -0.396 6.396 7 C 0.296 3.704 8 O -0.405 6.405 9 N -0.306 5.306 10 C -0.012 4.012 11 C -0.170 4.170 12 C 0.177 3.823 13 O -0.375 6.375 14 C -0.589 4.589 15 H 0.097 0.903 16 C -0.115 4.115 17 N -0.521 5.521 18 Si 0.698 3.302 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.145 1.145 22 C -0.031 4.031 23 C 0.034 3.966 24 H 0.131 0.869 25 C -0.215 4.215 26 C -0.023 4.023 27 O -0.295 6.295 28 C -0.063 4.063 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.211 0.789 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.103 0.897 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.799 11.283 11.604 25.573 hybrid contribution 0.339 -0.090 0.343 0.490 sum -19.461 11.193 11.947 25.431 Atomic orbital electron populations 1.23753 0.95791 1.01020 1.01191 1.23031 0.95912 0.98304 0.99170 1.21314 0.92285 0.96011 0.90059 1.47841 1.15642 1.51770 1.15656 1.20336 0.81978 0.79591 0.88864 1.90725 1.51846 1.58355 1.38637 1.19583 0.81620 0.80522 0.88683 1.90612 1.51733 1.60142 1.38061 1.48466 1.18442 1.48962 1.14732 1.22209 0.89641 1.00893 0.88410 1.23137 0.96902 1.00231 0.96687 1.20100 0.86170 0.84258 0.91724 1.86534 1.78202 1.41261 1.31457 1.21095 0.94240 1.14121 1.29446 0.90270 1.24919 0.97784 0.93959 0.94823 1.69948 1.12192 1.33070 1.36907 0.87101 0.78947 0.83163 0.80946 1.21262 1.22404 1.14492 1.23208 0.96858 0.96650 0.86365 1.21272 0.96021 0.92207 0.87100 0.86859 1.22051 1.02703 0.94012 1.02727 1.22840 0.86960 0.99895 0.92591 1.87967 1.17137 1.78787 1.45629 1.22688 0.86431 0.97716 0.99468 0.88178 0.89476 0.88442 0.89502 0.86099 0.90819 0.91508 0.89351 0.90398 0.78917 0.92335 0.90719 0.90295 0.91431 0.92150 0.91066 0.92901 0.92311 0.94601 0.89705 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 11.17 29.01 0.32 -1.43 16 2 C -0.15 -1.75 8.21 -36.03 -0.30 -2.04 16 3 C 0.12 1.51 4.49 -5.19 -0.02 1.49 16 4 N -0.58 -7.35 2.38 -167.98 -0.40 -7.75 16 5 C 0.51 8.06 7.61 -11.59 -0.09 7.98 16 6 O -0.52 -8.94 13.47 5.50 0.07 -8.86 16 7 C 0.51 9.06 7.76 -11.58 -0.09 8.97 16 8 O -0.53 -9.59 12.67 5.50 0.07 -9.52 16 9 N -0.57 -10.75 3.33 -171.04 -0.57 -11.31 16 10 C 0.11 2.04 5.49 -3.06 -0.02 2.02 16 11 C -0.13 -2.69 4.87 -24.90 -0.12 -2.81 16 12 C 0.22 4.80 0.69 -89.64 -0.06 4.73 16 13 O -0.57 -12.40 10.36 -35.23 -0.37 -12.76 16 14 C -0.55 -14.37 8.85 -34.44 -0.30 -14.68 16 15 H 0.08 2.23 8.02 -52.49 -0.42 1.81 16 16 C 0.09 2.48 5.46 -17.82 -0.10 2.39 16 17 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 18 Si 0.87 20.97 24.54 -169.99 -4.17 16.80 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 21 H -0.22 -5.21 4.82 56.52 0.27 -4.94 16 22 C 0.09 1.80 6.08 -2.54 -0.02 1.79 16 23 C 0.14 1.40 3.15 -67.93 -0.21 1.18 16 24 H 0.11 1.24 6.91 -51.93 -0.36 0.88 16 25 C -0.16 -1.34 8.99 37.15 0.33 -1.00 16 26 C 0.05 0.47 5.46 37.16 0.20 0.67 16 27 O -0.38 -3.16 5.02 -35.23 -0.18 -3.34 16 28 C 0.03 0.21 9.09 101.05 0.92 1.13 16 29 H 0.10 0.88 6.25 -52.49 -0.33 0.55 16 30 H 0.09 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.10 1.37 7.92 -52.49 -0.42 0.95 16 32 H 0.09 0.93 5.07 -51.93 -0.26 0.66 16 33 H 0.12 1.73 5.26 -52.01 -0.27 1.45 16 34 H 0.07 1.38 7.50 -51.93 -0.39 0.99 16 35 H 0.07 1.14 7.78 -51.93 -0.40 0.74 16 36 H 0.09 1.77 8.03 -51.93 -0.42 1.35 16 37 H 0.08 1.63 4.93 -51.93 -0.26 1.37 16 38 H 0.36 6.96 9.11 45.56 0.41 7.37 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 41 H 0.08 1.58 8.02 -51.93 -0.42 1.16 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.62 6.12 -51.93 -0.32 0.30 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.08 0.44 7.68 -51.93 -0.40 0.04 16 49 H 0.04 0.26 8.02 -51.93 -0.42 -0.15 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -30.59 373.86 -5.56 -36.15 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.88 Total: 9.71 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 0.45 Total: 10.38 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.19 Total: -44.19 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.40 Total: -34.48 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.17 Total: 16.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.59 -5.56 -36.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118468369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.567 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds