Wall clock time and date at job start Tue Mar 31 2020 23:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99981 * 2 1 4 4 N 1.46498 * 109.46990 * 125.00704 * 3 2 1 5 5 C 1.34770 * 120.00443 * 81.54708 * 4 3 2 6 6 O 1.21349 * 120.00094 * 183.72608 * 5 4 3 7 7 C 1.49452 * 119.99861 * 3.71679 * 5 4 3 8 8 O 1.21345 * 120.00294 * 3.69655 * 7 5 4 9 9 N 1.34779 * 120.00082 * 183.69292 * 7 5 4 10 10 C 1.47024 * 125.64835 * 359.96055 * 9 7 5 11 11 C 1.54322 * 107.27281 * 181.09728 * 10 9 7 12 12 C 1.55153 * 102.94152 * 22.19075 * 11 10 9 13 13 O 1.42900 * 111.00384 * 82.57684 * 12 11 10 14 14 C 1.50697 * 111.03864 * 206.40962 * 12 11 10 15 15 H 1.07997 * 119.99898 * 113.72260 * 14 12 11 16 16 C 1.37876 * 119.99933 * 293.72454 * 14 12 11 17 17 N 1.31523 * 119.99812 * 187.23321 * 16 14 12 18 18 Si 1.86800 * 120.00347 * 7.23662 * 16 14 12 19 19 H 1.48502 * 109.47318 * 94.61395 * 18 16 14 20 20 H 1.48494 * 109.47103 * 214.61886 * 18 16 14 21 21 H 1.48505 * 109.46649 * 334.61474 * 18 16 14 22 22 C 1.47424 * 125.65188 * 180.02562 * 9 7 5 23 23 C 1.46501 * 119.99470 * 261.54329 * 4 3 2 24 24 H 1.09006 * 109.46909 * 180.02562 * 23 4 3 25 25 C 1.52991 * 109.47422 * 300.00002 * 23 4 3 26 26 C 1.53003 * 109.47291 * 60.00386 * 23 4 3 27 27 O 1.42908 * 109.46710 * 294.99756 * 26 23 4 28 28 C 1.42895 * 113.99577 * 179.97438 * 27 26 23 29 29 H 1.08001 * 119.99654 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99904 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99715 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47204 * 5.00015 * 3 2 1 33 33 H 1.09001 * 109.47061 * 245.00409 * 3 2 1 34 34 H 1.09006 * 109.87986 * 300.51499 * 10 9 7 35 35 H 1.08999 * 109.88315 * 61.67607 * 10 9 7 36 36 H 1.08998 * 110.71696 * 263.82960 * 11 10 9 37 37 H 1.08996 * 110.71935 * 140.55738 * 11 10 9 38 38 H 0.96697 * 114.00034 * 186.35439 * 13 12 11 39 39 H 0.96998 * 119.99687 * 180.02562 * 17 16 14 40 40 H 1.09005 * 110.36197 * 36.99497 * 22 9 7 41 41 H 1.08992 * 110.45714 * 274.72519 * 22 9 7 42 42 H 1.09000 * 109.47604 * 180.02562 * 25 23 4 43 43 H 1.08998 * 109.47540 * 300.00305 * 25 23 4 44 44 H 1.09001 * 109.47471 * 60.00051 * 25 23 4 45 45 H 1.08998 * 109.47175 * 54.99173 * 26 23 4 46 46 H 1.08996 * 109.47569 * 174.99920 * 26 23 4 47 47 H 1.08996 * 109.47641 * 59.99715 * 28 27 26 48 48 H 1.09005 * 109.47023 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.47603 * 299.99679 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1313 5 6 4.1883 0.7148 1.0363 6 8 4.9306 0.6788 1.9956 7 6 4.5985 0.0748 -0.2504 8 8 3.8865 0.1682 -1.2286 9 7 5.7593 -0.6061 -0.3244 10 6 6.7131 -0.7960 0.7782 11 6 7.8998 -1.6110 0.2223 12 6 7.8152 -1.3504 -1.3048 13 8 8.4369 -0.1104 -1.6480 14 6 8.4229 -2.4893 -2.0824 15 1 7.7984 -3.1102 -2.7075 16 6 9.7762 -2.7385 -1.9958 17 7 10.3308 -3.6374 -2.7795 18 14 10.8220 -1.7996 -0.7652 19 1 10.9476 -2.5922 0.4843 20 1 12.1709 -1.5642 -1.3398 21 1 10.1788 -0.4959 -0.4620 22 6 6.2835 -1.2828 -1.5247 23 6 2.6258 2.0293 2.3659 24 1 3.4374 1.9419 3.0884 25 6 2.3724 3.5069 2.0608 26 6 1.3560 1.4033 2.9463 27 8 0.2649 1.6210 2.0495 28 6 -0.9754 1.0722 2.4993 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 7.0635 0.1722 1.1361 35 1 6.2359 -1.3433 1.5911 36 1 7.7747 -2.6717 0.4401 37 1 8.8431 -1.2422 0.6249 38 1 8.3249 0.1426 -2.5745 39 1 11.2828 -3.8131 -2.7182 40 1 6.0537 -0.7022 -2.4182 41 1 5.8677 -2.2868 -1.6082 42 1 2.0990 4.0260 2.9795 43 1 3.2770 3.9529 1.6474 44 1 1.5611 3.5948 1.3382 45 1 1.5077 0.3323 3.0807 46 1 1.1320 1.8623 3.9092 47 1 -1.2480 1.5239 3.4531 48 1 -1.7525 1.2793 1.7635 49 1 -0.8719 -0.0056 2.6242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118468369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:34 Heat of formation + Delta-G solvation = -122.100238 kcal Electronic energy + Delta-G solvation = -31858.371255 eV Core-core repulsion = 27594.281238 eV Total energy + Delta-G solvation = -4264.090017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12745 -40.50728 -39.17437 -38.93589 -37.24127 -36.06056 -34.79395 -34.50001 -32.20639 -32.08973 -30.10874 -28.28754 -27.92709 -27.46611 -26.29723 -25.35299 -23.83295 -21.85883 -21.35939 -21.19036 -20.13607 -19.35343 -18.40276 -18.36549 -17.46887 -17.41934 -17.03403 -16.88663 -16.60244 -16.50502 -16.31648 -15.69701 -15.51426 -15.14178 -15.11451 -14.74916 -14.65405 -14.25884 -14.21376 -13.97336 -13.89999 -13.63348 -13.35635 -13.20694 -13.10137 -13.02758 -12.82268 -12.61194 -12.41424 -12.36339 -12.23671 -12.17268 -11.92374 -11.83992 -11.78810 -10.97596 -10.77358 -10.62004 -10.41231 -10.32486 -10.03089 -9.91442 -9.63239 -8.36748 -6.50819 0.32045 1.10756 1.38748 1.46346 1.54342 1.69239 2.09308 2.39374 2.41166 2.91351 2.98568 3.10297 3.53376 3.77110 3.81335 3.99514 4.01527 4.11378 4.19299 4.27756 4.31541 4.37189 4.45508 4.51431 4.57890 4.63649 4.66913 4.69152 4.76469 4.84522 4.89924 4.92052 4.96430 4.98449 5.08365 5.08903 5.13465 5.32889 5.35883 5.38569 5.50667 5.83656 5.96147 5.99923 6.06225 6.23414 6.27435 6.56627 6.60156 6.90460 7.11244 7.30640 8.77033 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002905 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.833281 B = 9637.022817 C =10162.104627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.173 4.173 3 C 0.131 3.869 4 N -0.564 5.564 5 C 0.508 3.492 6 O -0.538 6.538 7 C 0.510 3.490 8 O -0.534 6.534 9 N -0.582 5.582 10 C 0.123 3.877 11 C -0.132 4.132 12 C 0.217 3.783 13 O -0.572 6.572 14 C -0.547 4.547 15 H 0.045 0.955 16 C 0.042 3.958 17 N -0.933 5.933 18 Si 0.930 3.070 19 H -0.277 1.277 20 H -0.305 1.305 21 H -0.210 1.210 22 C 0.100 3.900 23 C 0.130 3.870 24 H 0.106 0.894 25 C -0.149 4.149 26 C 0.061 3.939 27 O -0.387 6.387 28 C 0.029 3.971 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.375 0.625 39 H 0.268 0.732 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.083 0.917 47 H 0.048 0.952 48 H 0.098 0.902 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.338 13.259 13.211 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.192 4.192 3 C 0.011 3.989 4 N -0.296 5.296 5 C 0.291 3.709 6 O -0.415 6.415 7 C 0.294 3.706 8 O -0.413 6.413 9 N -0.314 5.314 10 C 0.001 3.999 11 C -0.170 4.170 12 C 0.176 3.824 13 O -0.379 6.379 14 C -0.584 4.584 15 H 0.064 0.936 16 C -0.159 4.159 17 N -0.571 5.571 18 Si 0.756 3.244 19 H -0.203 1.203 20 H -0.233 1.233 21 H -0.133 1.133 22 C -0.022 4.022 23 C 0.028 3.972 24 H 0.124 0.876 25 C -0.207 4.207 26 C -0.016 4.016 27 O -0.306 6.306 28 C -0.067 4.067 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.223 0.777 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.116 0.884 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.084 13.357 13.637 29.190 hybrid contribution 0.821 -0.722 -0.367 1.153 sum -21.263 12.635 13.270 28.069 Atomic orbital electron populations 1.23920 0.94848 1.02286 0.97547 1.22835 0.96662 0.97069 1.02608 1.21223 0.92023 0.96890 0.88785 1.47978 1.14470 1.50393 1.16760 1.19979 0.83000 0.80165 0.87777 1.90711 1.52646 1.59506 1.38667 1.20058 0.81013 0.80035 0.89539 1.90625 1.51793 1.60130 1.38738 1.48458 1.19132 1.49598 1.14211 1.22093 0.88786 1.00624 0.88398 1.23097 0.97913 1.00781 0.95227 1.19953 0.87143 0.82901 0.92380 1.86484 1.78321 1.40567 1.32546 1.21302 0.93871 1.14556 1.28699 0.93645 1.25664 0.99138 0.94787 0.96340 1.70065 1.12595 1.35349 1.39106 0.86198 0.76773 0.82495 0.78975 1.20296 1.23311 1.13250 1.22905 0.95515 0.96619 0.87155 1.21536 0.96748 0.93193 0.85674 0.87611 1.22003 1.02233 0.92606 1.03849 1.22733 0.86360 0.99077 0.93431 1.87925 1.17707 1.78975 1.46022 1.22828 0.85701 0.97504 1.00633 0.86499 0.88398 0.91018 0.87541 0.88423 0.90816 0.90066 0.89258 0.90429 0.77679 0.92295 0.90743 0.90950 0.89158 0.93182 0.90892 0.94290 0.89859 0.93345 0.88382 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 11.17 67.78 0.76 -1.77 16 2 C -0.17 -3.96 8.21 25.65 0.21 -3.75 16 3 C 0.13 3.03 4.49 85.63 0.38 3.41 16 4 N -0.56 -13.74 2.38 -803.73 -1.91 -15.65 16 5 C 0.51 15.75 7.61 87.27 0.66 16.42 16 6 O -0.54 -17.96 13.47 -3.24 -0.04 -18.01 16 7 C 0.51 17.87 7.76 87.27 0.68 18.55 16 8 O -0.53 -19.48 12.67 -3.23 -0.04 -19.52 16 9 N -0.58 -21.51 3.33 -813.41 -2.71 -24.22 16 10 C 0.12 4.38 5.49 86.73 0.48 4.86 16 11 C -0.13 -5.27 4.87 31.78 0.15 -5.11 16 12 C 0.22 9.50 0.69 -10.16 -0.01 9.49 16 13 O -0.57 -24.36 10.36 -148.98 -1.54 -25.91 16 14 C -0.55 -29.04 8.85 25.60 0.23 -28.82 16 15 H 0.05 2.67 8.02 -2.91 -0.02 2.64 16 16 C 0.04 2.31 5.46 84.65 0.46 2.77 16 17 N -0.93 -55.99 13.96 21.45 0.30 -55.69 16 18 Si 0.93 43.40 24.54 68.60 1.68 45.08 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 21 H -0.21 -9.33 4.82 99.48 0.48 -8.85 16 22 C 0.10 4.00 6.08 86.85 0.53 4.53 16 23 C 0.13 2.40 3.15 44.99 0.14 2.54 16 24 H 0.11 2.15 6.91 -2.38 -0.02 2.13 16 25 C -0.15 -2.15 8.99 71.98 0.65 -1.50 16 26 C 0.06 0.90 5.46 71.98 0.39 1.29 16 27 O -0.39 -5.29 5.02 -148.98 -0.75 -6.04 16 28 C 0.03 0.27 9.09 113.37 1.03 1.30 16 29 H 0.12 1.63 6.25 -2.91 -0.02 1.61 16 30 H 0.10 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.07 2.03 7.92 -2.91 -0.02 2.00 16 32 H 0.11 2.02 5.07 -2.39 -0.01 2.01 16 33 H 0.10 2.75 5.26 -3.71 -0.02 2.73 16 34 H 0.07 2.65 7.50 -2.38 -0.02 2.63 16 35 H 0.08 2.66 7.78 -2.39 -0.02 2.64 16 36 H 0.09 3.51 8.03 -2.39 -0.02 3.49 16 37 H 0.08 3.09 4.93 -2.39 -0.01 3.08 16 38 H 0.37 14.07 9.11 -74.06 -0.67 13.39 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.07 2.94 8.04 -2.38 -0.02 2.92 16 41 H 0.07 2.96 8.02 -2.39 -0.02 2.94 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.04 6.12 -2.39 -0.01 1.02 16 45 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.10 0.65 7.68 -2.38 -0.02 0.63 16 49 H 0.04 0.37 8.02 -2.39 -0.02 0.35 16 Total: -1.00 -66.38 373.86 1.79 -64.58 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.06 Total: 31.15 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.75 Total: 24.21 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.32 Total: -95.56 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -2.38 Total: -69.47 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.68 Total: 45.08 kcal Total: -66.38 1.79 -64.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118468369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.517 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds