Wall clock time and date at job start Tue Mar 31 2020 22:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47136 * 2 1 4 4 O 1.45210 * 109.47118 * 119.99614 * 2 1 3 5 5 C 1.34223 * 116.99655 * 150.00049 * 4 2 1 6 6 O 1.20826 * 120.00683 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99912 * 180.02562 * 5 4 2 8 8 C 1.52992 * 109.47437 * 179.97438 * 7 5 4 9 9 N 1.46501 * 109.47689 * 179.97438 * 8 7 5 10 10 C 1.34775 * 120.00745 * 179.97438 * 9 8 7 11 11 O 1.21355 * 119.99224 * 0.02562 * 10 9 8 12 12 C 1.49441 * 120.00423 * 180.02562 * 10 9 8 13 13 O 1.21351 * 119.99893 * 6.74172 * 12 10 9 14 14 N 1.34776 * 120.00563 * 186.74458 * 12 10 9 15 15 C 1.46931 * 120.62316 * 8.42612 * 14 12 10 16 16 C 1.53625 * 108.54448 * 126.37196 * 15 14 12 17 17 C 1.53044 * 109.24133 * 54.85149 * 16 15 14 18 18 C 1.53047 * 109.53722 * 298.51197 * 17 16 15 19 19 H 1.09001 * 109.49743 * 301.41725 * 18 17 16 20 20 C 1.50701 * 109.52105 * 181.33527 * 18 17 16 21 21 H 1.08003 * 120.00018 * 0.14571 * 20 18 17 22 22 C 1.37875 * 119.99474 * 180.14509 * 20 18 17 23 23 N 1.31512 * 120.00352 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99739 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47310 * 89.99947 * 24 22 20 26 26 H 1.48503 * 109.47357 * 210.00528 * 24 22 20 27 27 H 1.48504 * 109.46899 * 330.00298 * 24 22 20 28 28 C 1.46918 * 120.63417 * 188.70408 * 14 12 10 29 29 H 1.09009 * 109.46887 * 300.00324 * 1 2 3 30 30 H 1.08996 * 109.46802 * 59.99737 * 1 2 3 31 31 H 1.08996 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47243 * 239.99978 * 2 1 3 33 33 H 1.08999 * 109.46811 * 299.99552 * 3 2 1 34 34 H 1.08998 * 109.47072 * 59.99873 * 3 2 1 35 35 H 1.09001 * 109.47217 * 179.97438 * 3 2 1 36 36 H 1.08994 * 109.47464 * 59.99568 * 7 5 4 37 37 H 1.09005 * 109.46608 * 299.99818 * 7 5 4 38 38 H 1.09005 * 109.47135 * 299.99571 * 8 7 5 39 39 H 1.09007 * 109.47703 * 59.99360 * 8 7 5 40 40 H 0.96998 * 119.99300 * 359.97438 * 9 8 7 41 41 H 1.08999 * 109.58344 * 246.19986 * 15 14 12 42 42 H 1.08994 * 109.59125 * 6.62084 * 15 14 12 43 43 H 1.09002 * 109.63247 * 294.85966 * 16 15 14 44 44 H 1.08997 * 109.43359 * 174.72306 * 16 15 14 45 45 H 1.09006 * 109.45606 * 178.49455 * 17 16 15 46 46 H 1.08993 * 109.45089 * 58.52576 * 17 16 15 47 47 H 0.97004 * 120.00141 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.58717 * 353.37321 * 28 14 12 49 49 H 1.09004 * 109.58466 * 113.66008 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 3.1936 -1.3169 1.0852 6 8 3.8015 -1.2997 0.0411 7 6 3.7595 -2.0495 2.2744 8 6 5.1017 -2.6780 1.8949 9 7 5.6521 -3.3897 3.0511 10 6 6.8361 -4.0256 2.9501 11 8 7.4466 -4.0082 1.9014 12 6 7.3972 -4.7521 4.1294 13 8 6.7343 -4.8741 5.1385 14 7 8.6395 -5.2717 4.0724 15 6 9.5223 -4.9775 2.9353 16 6 10.8520 -4.4315 3.4775 17 6 11.4337 -5.4278 4.4832 18 6 10.4664 -5.5931 5.6577 19 1 10.2992 -4.6252 6.1302 20 6 11.0544 -6.5490 6.6635 21 1 12.0226 -6.9929 6.4847 22 6 10.3561 -6.8569 7.8118 23 7 9.1769 -6.3167 8.0291 24 14 11.0845 -8.0423 9.0582 25 1 11.8911 -7.2853 10.0488 26 1 9.9888 -8.7606 9.7573 27 1 11.9527 -9.0237 8.3593 28 6 9.1345 -6.1477 5.1429 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 3.0664 -2.8323 2.5824 37 1 3.9054 -1.3492 3.0968 38 1 4.9555 -3.3785 1.0727 39 1 5.7952 -1.8955 1.5866 40 1 5.1643 -3.4033 3.8894 41 1 9.7033 -5.8902 2.3676 42 1 9.0544 -4.2319 2.2926 43 1 10.6811 -3.4746 3.9706 44 1 11.5518 -4.2965 2.6528 45 1 12.3905 -5.0563 4.8502 46 1 11.5810 -6.3914 3.9957 47 1 8.6858 -6.5330 8.8372 48 1 8.4105 -6.1743 5.9573 49 1 9.2821 -7.1545 4.7521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118581802.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:57 Heat of formation + Delta-G solvation = -157.280358 kcal Electronic energy + Delta-G solvation = -29604.176613 eV Core-core repulsion = 25338.561072 eV Total energy + Delta-G solvation = -4265.615541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02934 -40.45353 -38.39524 -37.40605 -36.84205 -35.47806 -33.66793 -33.26149 -31.77890 -31.33234 -29.74269 -27.78838 -26.48631 -25.10025 -24.74371 -22.65999 -21.86669 -21.80283 -20.94722 -20.15288 -18.86871 -18.23767 -17.27460 -16.97387 -16.77378 -16.32509 -16.11468 -15.82041 -15.24697 -14.99673 -14.62896 -14.51706 -14.38915 -14.09676 -13.85269 -13.61590 -13.31140 -13.22210 -12.88810 -12.79624 -12.65245 -12.58027 -12.36431 -12.23832 -12.16880 -11.91918 -11.79476 -11.40563 -11.40076 -11.04427 -10.98235 -10.81943 -10.71107 -10.45181 -10.30491 -10.12893 -9.87992 -9.32753 -9.22303 -9.11536 -8.60820 -8.44737 -7.82711 -6.01619 -4.10160 1.77804 1.80737 2.04521 2.79853 3.30210 3.37402 3.40006 3.61550 3.91383 4.16155 4.28910 4.39866 4.41079 4.41842 4.57031 4.64461 4.71338 4.94899 5.03578 5.21646 5.25539 5.28395 5.33173 5.43289 5.53260 5.56713 5.62564 5.65365 5.65717 5.85190 6.04651 6.09526 6.24539 6.36777 6.50984 6.59634 6.71314 6.84635 6.98751 7.01569 7.16692 7.20128 7.34685 7.58757 7.82164 7.92707 7.95875 8.15165 8.35115 8.56563 8.93855 9.55395 11.03626 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.001916 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.272746 B =14612.084799 C =15435.959481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.171 4.171 4 O -0.353 6.353 5 C 0.469 3.531 6 O -0.502 6.502 7 C -0.129 4.129 8 C 0.129 3.871 9 N -0.708 5.708 10 C 0.511 3.489 11 O -0.513 6.513 12 C 0.495 3.505 13 O -0.521 6.521 14 N -0.569 5.569 15 C 0.070 3.930 16 C -0.133 4.133 17 C -0.113 4.113 18 C 0.041 3.959 19 H 0.030 0.970 20 C -0.519 4.519 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.881 5.881 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.108 3.892 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.414 0.586 41 H 0.061 0.939 42 H 0.126 0.874 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.263 0.737 48 H 0.124 0.876 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.839 12.556 -15.004 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.228 4.228 4 O -0.270 6.270 5 C 0.311 3.689 6 O -0.389 6.389 7 C -0.167 4.167 8 C 0.006 3.994 9 N -0.362 5.362 10 C 0.294 3.706 11 O -0.390 6.390 12 C 0.275 3.725 13 O -0.398 6.398 14 N -0.301 5.301 15 C -0.052 4.052 16 C -0.171 4.171 17 C -0.150 4.150 18 C 0.021 3.979 19 H 0.048 0.952 20 C -0.558 4.558 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.519 5.519 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.012 4.012 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.251 0.749 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.142 0.858 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.734 12.512 -15.422 25.337 hybrid contribution 0.187 -0.620 0.972 1.168 sum -15.546 11.892 -14.450 24.329 Atomic orbital electron populations 1.21900 0.92237 1.03307 1.03289 1.22783 0.95067 0.92772 0.86884 1.22221 1.02280 0.95110 1.03219 1.86563 1.36433 1.62608 1.41404 1.23328 0.79331 0.76474 0.89756 1.90711 1.59160 1.58362 1.30708 1.21521 0.97857 1.01436 0.95913 1.21116 0.92643 0.97108 0.88568 1.45714 1.21812 1.52934 1.15789 1.20762 0.81282 0.79167 0.89399 1.90495 1.57405 1.60506 1.30561 1.19755 0.83674 0.81765 0.87273 1.90775 1.59348 1.58630 1.31029 1.48445 1.11585 1.46304 1.23719 1.22797 0.91239 1.02584 0.88548 1.22035 0.96202 0.99753 0.99156 1.21657 0.99317 0.97305 0.96747 1.18966 0.89925 0.97368 0.91600 0.95175 1.21093 1.04085 1.27104 1.03515 0.92258 1.25062 0.94939 0.96113 0.97978 1.69880 1.12310 1.43029 1.26674 0.86574 0.78745 0.81126 0.81445 1.20677 1.21191 1.19899 1.22492 1.00675 0.89856 0.88148 0.91270 0.90279 0.91589 0.89566 0.90593 0.91416 0.91837 0.86512 0.86491 0.89941 0.89923 0.74932 0.92084 0.85680 0.92394 0.92123 0.93047 0.93159 0.92647 0.85773 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.57 37.16 0.36 -0.35 16 2 C 0.08 0.55 3.18 -26.73 -0.09 0.47 16 3 C -0.17 -1.03 9.55 37.16 0.35 -0.67 16 4 O -0.35 -2.94 9.88 -39.24 -0.39 -3.33 16 5 C 0.47 4.26 7.93 36.01 0.29 4.55 16 6 O -0.50 -6.01 15.20 -18.75 -0.29 -6.30 16 7 C -0.13 -0.90 5.92 -27.89 -0.17 -1.06 16 8 C 0.13 1.30 4.96 -4.05 -0.02 1.28 16 9 N -0.71 -8.58 5.55 -60.73 -0.34 -8.92 16 10 C 0.51 8.29 7.74 -11.59 -0.09 8.20 16 11 O -0.51 -8.84 13.18 5.49 0.07 -8.77 16 12 C 0.49 9.83 7.73 -11.59 -0.09 9.74 16 13 O -0.52 -11.64 15.93 5.50 0.09 -11.55 16 14 N -0.57 -11.82 2.97 -173.02 -0.51 -12.33 16 15 C 0.07 1.26 6.01 -3.48 -0.02 1.24 16 16 C -0.13 -2.34 6.10 -26.38 -0.16 -2.51 16 17 C -0.11 -2.31 5.11 -26.68 -0.14 -2.44 16 18 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 19 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.52 -14.01 8.57 -34.44 -0.29 -14.30 16 21 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 22 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 23 N -0.88 -25.24 11.39 55.43 0.63 -24.61 16 24 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.11 2.60 5.41 -3.71 -0.02 2.58 16 29 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.67 7.16 -51.93 -0.37 0.30 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.41 4.45 7.96 -40.82 -0.33 4.13 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.13 2.18 4.30 -54.85 -0.24 1.94 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.12 3.42 5.12 -51.93 -0.27 3.16 16 49 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -32.55 399.22 -8.05 -40.59 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.92 Total: 4.04 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.39 Total: 9.12 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.22 Total: -45.86 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.51 Total: -29.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.55 -8.05 -40.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118581802.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.688 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds