Wall clock time and date at job start Tue Mar 31 2020 23:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46791 * 2 1 4 4 C 1.52997 * 109.47541 * 239.99358 * 2 1 3 5 5 C 1.52990 * 109.47312 * 174.99841 * 4 2 1 6 6 H 1.09002 * 109.47692 * 305.00394 * 5 4 2 7 7 C 1.53001 * 109.47323 * 185.00404 * 5 4 2 8 8 N 1.46499 * 109.47056 * 65.00586 * 5 4 2 9 9 C 1.34784 * 120.00050 * 205.00043 * 8 5 4 10 10 O 1.21279 * 120.00030 * 359.97438 * 9 8 5 11 11 C 1.50699 * 119.99799 * 179.97438 * 9 8 5 12 12 C 1.52998 * 109.46991 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47370 * 180.02562 * 12 11 9 14 14 C 1.38224 * 119.99213 * 265.02797 * 13 12 11 15 15 C 1.38187 * 120.05295 * 179.97438 * 14 13 12 16 16 C 1.38492 * 120.02416 * 0.02562 * 15 14 13 17 17 F 1.35099 * 120.00943 * 179.97438 * 16 15 14 18 18 C 1.38397 * 119.97529 * 359.72914 * 16 15 14 19 19 C 1.38445 * 119.94721 * 0.52975 * 18 16 15 20 20 F 1.35104 * 120.01039 * 179.74070 * 19 18 16 21 21 N 1.46508 * 109.46868 * 119.99705 * 2 1 3 22 22 C 1.36935 * 119.99945 * 275.00058 * 21 2 1 23 23 H 1.08006 * 119.99745 * 0.02562 * 22 21 2 24 24 C 1.38810 * 119.99988 * 180.02562 * 22 21 2 25 25 N 1.31618 * 120.00284 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99953 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47239 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47379 * 119.99750 * 26 24 22 29 29 H 1.48508 * 109.47105 * 239.99864 * 26 24 22 30 30 H 1.08994 * 109.47539 * 300.00124 * 1 2 3 31 31 H 1.09001 * 109.46837 * 60.00570 * 1 2 3 32 32 H 1.09005 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46671 * 55.00052 * 4 2 1 34 34 H 1.08999 * 109.47565 * 295.00338 * 4 2 1 35 35 H 1.08998 * 109.47259 * 60.00312 * 7 5 4 36 36 H 1.09007 * 109.47091 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46931 * 299.99825 * 7 5 4 38 38 H 0.97001 * 120.00290 * 24.99666 * 8 5 4 39 39 H 1.09000 * 109.46972 * 60.00187 * 11 9 8 40 40 H 1.08998 * 109.47568 * 300.00266 * 11 9 8 41 41 H 1.09000 * 109.46972 * 60.00356 * 12 11 9 42 42 H 1.08998 * 109.47320 * 300.00587 * 12 11 9 43 43 H 1.08009 * 119.97191 * 359.97414 * 14 13 12 44 44 H 1.07999 * 119.98601 * 180.02562 * 15 14 13 45 45 H 1.07999 * 120.03007 * 180.27174 * 18 16 15 46 46 H 0.96994 * 119.99845 * 95.00283 * 21 2 1 47 47 H 0.96992 * 120.00338 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5648 -0.6133 -1.3135 6 1 3.8571 0.4358 -1.2677 7 6 4.0646 -1.2251 -2.6238 8 7 4.1537 -1.3342 -0.1822 9 6 5.3748 -0.9910 0.2736 10 8 5.9863 -0.0858 -0.2531 11 6 5.9802 -1.7322 1.4377 12 6 7.3598 -1.1498 1.7512 13 6 7.9656 -1.8913 2.9149 14 6 7.8284 -1.3947 4.1975 15 6 8.3829 -2.0739 5.2656 16 6 9.0773 -3.2530 5.0518 17 9 9.6198 -3.9165 6.0962 18 6 9.2110 -3.7538 3.7686 19 6 8.6596 -3.0697 2.6988 20 9 8.7938 -3.5547 1.4450 21 7 2.0183 -0.6906 1.1963 22 6 2.1491 -0.0074 2.3758 23 1 1.8918 1.0404 2.4243 24 6 2.6122 -0.6616 3.5091 25 7 2.9252 -1.9386 3.4502 26 14 2.7899 0.2702 5.1183 27 1 2.3750 1.6824 4.9211 28 1 1.9296 -0.3590 6.1523 29 1 4.2069 0.2283 5.5608 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6055 -0.2619 -2.1369 34 1 1.7518 -1.7716 -1.2055 35 1 3.6266 -0.6888 -3.4656 36 1 5.1510 -1.1485 -2.6695 37 1 3.7724 -2.2742 -2.6697 38 1 3.6648 -2.0585 0.2389 39 1 6.0809 -2.7874 1.1838 40 1 5.3348 -1.6284 2.3099 41 1 7.2596 -0.0945 2.0049 42 1 8.0050 -1.2540 0.8789 43 1 7.2874 -0.4750 4.3651 44 1 8.2748 -1.6852 6.2674 45 1 9.7486 -4.6755 3.6014 46 1 2.2490 -1.6317 1.1528 47 1 3.2485 -2.3958 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135827111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:59 Heat of formation + Delta-G solvation = -119.440880 kcal Electronic energy + Delta-G solvation = -30498.549562 eV Core-core repulsion = 26123.487348 eV Total energy + Delta-G solvation = -4375.062214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.05484 -50.03241 -40.83871 -39.93870 -38.31151 -35.80750 -34.85483 -33.97252 -32.17974 -31.84564 -30.46527 -29.87965 -27.58144 -25.77252 -25.52506 -24.23379 -22.88231 -21.94376 -21.64910 -20.84344 -19.25308 -19.06402 -18.29694 -18.04584 -17.22277 -16.95276 -16.86689 -16.60641 -16.35606 -16.31190 -16.15604 -15.55544 -15.46943 -15.38666 -14.92470 -14.86210 -14.41198 -14.24579 -14.02758 -13.63738 -13.56238 -13.50304 -13.29187 -13.14652 -12.87835 -12.77579 -12.71398 -12.61131 -12.50176 -12.36941 -12.26929 -12.07872 -11.92853 -11.68858 -11.56466 -11.37772 -10.83947 -10.67786 -10.10620 -9.76222 -9.63199 -8.78410 -7.80556 -5.03599 -0.12253 -0.02790 1.47600 1.53039 1.57539 1.89324 2.26649 2.57073 2.64479 2.81084 3.35769 3.52089 3.55198 3.56425 3.82608 3.86279 4.02052 4.04907 4.13319 4.20408 4.30102 4.33468 4.42190 4.58868 4.64736 4.71476 4.73907 4.84116 4.85189 4.89115 4.89213 4.94863 4.96276 5.05025 5.10357 5.15755 5.18188 5.19059 5.32265 5.39039 5.44276 5.63539 5.65988 5.72430 5.86373 6.41272 6.80161 7.49638 7.50766 8.21889 8.49914 9.40284 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010617 B = 0.004006 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.682495 B = 6987.526170 C = 9017.926335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.029 0.971 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.055 0.945 7 C -0.151 4.151 8 N -0.693 5.693 9 C 0.523 3.477 10 O -0.596 6.596 11 C -0.129 4.129 12 C -0.052 4.052 13 C -0.123 4.123 14 C -0.061 4.061 15 C -0.155 4.155 16 C 0.117 3.883 17 F -0.134 7.134 18 C -0.185 4.185 19 C 0.121 3.879 20 F -0.134 7.134 21 N -0.720 5.720 22 C -0.227 4.227 23 H 0.054 0.946 24 C -0.048 4.048 25 N -0.942 5.942 26 Si 0.937 3.063 27 H -0.286 1.286 28 H -0.302 1.302 29 H -0.286 1.286 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.404 0.596 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.375 0.625 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 -3.473 -4.720 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.047 0.953 4 C -0.158 4.158 5 C 0.041 3.959 6 H 0.074 0.926 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.311 3.689 10 O -0.479 6.479 11 C -0.168 4.168 12 C -0.090 4.090 13 C -0.124 4.124 14 C -0.080 4.080 15 C -0.174 4.174 16 C 0.097 3.903 17 F -0.113 7.113 18 C -0.204 4.204 19 C 0.102 3.898 20 F -0.112 7.112 21 N -0.363 5.363 22 C -0.360 4.360 23 H 0.072 0.928 24 C -0.242 4.242 25 N -0.592 5.592 26 Si 0.769 3.231 27 H -0.212 1.212 28 H -0.230 1.230 29 H -0.213 1.213 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.241 0.759 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.163 0.837 44 H 0.178 0.822 45 H 0.184 0.816 46 H 0.210 0.790 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.101 -2.749 -5.002 9.909 hybrid contribution -0.119 -0.241 1.504 1.528 sum 7.981 -2.989 -3.498 9.213 Atomic orbital electron populations 1.22281 0.97834 1.00941 1.00359 1.20473 0.92598 0.94889 0.86627 0.95317 1.22116 0.93032 1.02003 0.98672 1.20905 0.93283 0.95932 0.85770 0.92634 1.22102 1.00582 1.01769 0.96513 1.46037 1.17368 1.37265 1.33683 1.20639 0.81577 0.82971 0.83689 1.90578 1.63096 1.32911 1.61319 1.21546 0.96896 1.00336 0.98066 1.20118 0.94580 0.99096 0.95228 1.20051 1.00158 0.95493 0.96697 1.20985 0.96535 1.00162 0.90274 1.21407 0.99461 0.94770 1.01720 1.17321 0.97227 0.92228 0.83498 1.91517 1.83757 1.79964 1.56032 1.21120 1.05441 1.03502 0.90357 1.17202 0.99663 0.93497 0.79481 1.91503 1.94089 1.87408 1.38220 1.42520 1.78133 1.10001 1.05637 1.19328 1.34593 0.93394 0.88640 0.92791 1.24971 1.03397 0.96645 0.99186 1.69670 1.52340 1.08630 1.28585 0.85628 0.77228 0.77866 0.82356 1.21210 1.23016 1.21259 0.95251 0.91349 0.93420 0.87577 0.90696 0.89749 0.94257 0.91484 0.75868 0.88938 0.88223 0.90627 0.90536 0.83658 0.82194 0.81573 0.79007 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.49 71.98 0.68 -4.22 16 2 C 0.16 5.72 2.89 44.99 0.13 5.85 16 3 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 4 C -0.12 -3.24 4.43 30.59 0.14 -3.10 16 5 C 0.15 4.46 2.57 44.99 0.12 4.57 16 6 H 0.06 2.00 7.58 -2.39 -0.02 1.99 16 7 C -0.15 -3.75 9.48 71.98 0.68 -3.07 16 8 N -0.69 -24.16 3.80 -442.54 -1.68 -25.84 16 9 C 0.52 20.24 7.79 87.66 0.68 20.92 16 10 O -0.60 -25.91 15.65 -3.03 -0.05 -25.96 16 11 C -0.13 -4.56 5.68 29.85 0.17 -4.39 16 12 C -0.05 -1.68 4.41 29.85 0.13 -1.55 16 13 C -0.12 -3.53 5.14 -19.82 -0.10 -3.63 16 14 C -0.06 -1.65 9.68 22.25 0.22 -1.43 16 15 C -0.15 -3.67 10.02 22.32 0.22 -3.44 16 16 C 0.12 2.77 7.30 22.37 0.16 2.93 16 17 F -0.13 -3.15 17.27 44.97 0.78 -2.37 16 18 C -0.18 -4.32 10.01 22.36 0.22 -4.09 16 19 C 0.12 3.26 7.24 22.37 0.16 3.42 16 20 F -0.13 -3.73 16.56 44.97 0.74 -2.98 16 21 N -0.72 -31.24 3.84 -322.93 -1.24 -32.49 16 22 C -0.23 -11.49 9.93 84.03 0.83 -10.65 16 23 H 0.05 2.83 7.83 -2.91 -0.02 2.81 16 24 C -0.05 -2.46 5.50 84.86 0.47 -2.00 16 25 N -0.94 -48.69 12.78 21.65 0.28 -48.41 16 26 Si 0.94 43.08 29.55 68.60 2.03 45.11 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.40 14.29 6.51 -92.71 -0.60 13.68 16 39 H 0.09 3.01 8.14 -2.39 -0.02 3.00 16 40 H 0.10 4.09 7.86 -2.39 -0.02 4.07 16 41 H 0.08 2.54 8.01 -2.39 -0.02 2.52 16 42 H 0.08 2.46 7.74 -2.39 -0.02 2.44 16 43 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 46 H 0.38 16.65 5.70 -92.71 -0.53 16.12 16 47 H 0.25 12.82 8.31 -92.71 -0.77 12.05 16 Total: -1.00 -58.34 397.42 5.63 -52.71 By element: Atomic # 1 Polarization: 44.27 SS G_CDS: -0.14 Total: 44.12 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 4.92 Total: -3.89 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -2.65 Total: -106.74 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 1.52 Total: -5.35 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -58.34 5.63 -52.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135827111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.734 kcal (2) G-P(sol) polarization free energy of solvation -58.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds