Wall clock time and date at job start Tue Mar 31 2020 23:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47007 * 239.99792 * 2 1 3 5 5 C 1.53002 * 109.46905 * 175.00247 * 4 2 1 6 6 H 1.09000 * 109.47046 * 305.00258 * 5 4 2 7 7 C 1.53006 * 109.46941 * 185.00191 * 5 4 2 8 8 N 1.46496 * 109.46969 * 65.00400 * 5 4 2 9 9 C 1.36945 * 119.99678 * 204.99856 * 8 5 4 10 10 H 1.07994 * 119.99851 * 359.97438 * 9 8 5 11 11 C 1.38809 * 119.99808 * 179.97438 * 9 8 5 12 12 N 1.31621 * 120.00416 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99933 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47106 * 60.00051 * 13 11 9 15 15 H 1.48507 * 109.47028 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47025 * 300.00062 * 13 11 9 17 17 N 1.46504 * 109.46741 * 120.00371 * 2 1 3 18 18 C 1.34776 * 119.99735 * 274.99417 * 17 2 1 19 19 O 1.21282 * 119.99940 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00035 * 179.97438 * 18 17 2 21 21 C 1.53006 * 109.47184 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.47184 * 180.02562 * 21 20 18 23 23 C 1.38196 * 120.00459 * 264.72518 * 22 21 20 24 24 C 1.38423 * 120.00387 * 179.76609 * 23 22 21 25 25 F 1.35102 * 120.00661 * 180.27268 * 24 23 22 26 26 C 1.38475 * 119.99768 * 0.53761 * 24 23 22 27 27 C 1.38160 * 120.00064 * 359.71613 * 26 24 23 28 28 C 1.38430 * 119.99487 * 85.00174 * 22 21 20 29 29 F 1.35099 * 120.00346 * 359.97438 * 28 22 21 30 30 H 1.08999 * 109.47062 * 300.00155 * 1 2 3 31 31 H 1.09000 * 109.46949 * 59.99825 * 1 2 3 32 32 H 1.08999 * 109.47549 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47319 * 295.00151 * 4 2 1 34 34 H 1.09001 * 109.46790 * 55.00375 * 4 2 1 35 35 H 1.08995 * 109.46951 * 59.99900 * 7 5 4 36 36 H 1.08999 * 109.46741 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46618 * 299.99612 * 7 5 4 38 38 H 0.96997 * 120.00939 * 24.99454 * 8 5 4 39 39 H 0.96994 * 120.00380 * 179.97438 * 12 11 9 40 40 H 0.96998 * 120.00303 * 94.99591 * 17 2 1 41 41 H 1.09001 * 109.46665 * 60.00498 * 20 18 17 42 42 H 1.08993 * 109.47304 * 300.00054 * 20 18 17 43 43 H 1.09001 * 109.46801 * 300.00442 * 21 20 18 44 44 H 1.09001 * 109.46998 * 60.00038 * 21 20 18 45 45 H 1.08007 * 119.99725 * 0.02562 * 23 22 21 46 46 H 1.07997 * 120.00031 * 179.70019 * 26 24 23 47 47 H 1.08002 * 120.00255 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 1 3.8571 0.4357 -1.2677 7 6 4.0645 -1.2251 -2.6240 8 7 4.1536 -1.3344 -0.1824 9 6 5.3943 -0.9858 0.2807 10 1 5.9389 -0.1797 -0.1883 11 6 5.9520 -1.6685 1.3529 12 7 5.2885 -2.6513 1.9242 13 14 7.6442 -1.1926 1.9851 14 1 7.6253 0.2234 2.4321 15 1 8.0101 -2.0680 3.1275 16 1 8.6425 -1.3552 0.8978 17 7 2.0183 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3571 19 8 1.8583 1.1583 2.4117 20 6 2.6487 -0.7289 3.5877 21 6 2.6998 0.2541 4.7591 22 6 3.2021 -0.4563 5.9896 23 6 2.3041 -0.9769 6.9020 24 6 2.7654 -1.6337 8.0298 25 9 1.8876 -2.1474 8.9190 26 6 4.1269 -1.7594 8.2494 27 6 5.0247 -1.2344 7.3399 28 6 4.5631 -0.5824 6.2088 29 9 5.4410 -0.0691 5.3194 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 3.6264 -0.6888 -3.4657 36 1 5.1509 -1.1486 -2.6697 37 1 3.7723 -2.2742 -2.6698 38 1 3.6647 -2.0586 0.2387 39 1 5.6784 -3.1286 2.6732 40 1 2.2489 -1.6319 1.1526 41 1 3.6478 -1.1215 3.3986 42 1 1.9758 -1.5506 3.8326 43 1 3.3725 1.0761 4.5145 44 1 1.7005 0.6464 4.9481 45 1 1.2422 -0.8749 6.7330 46 1 4.4868 -2.2675 9.1317 47 1 6.0865 -1.3320 7.5114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146639440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:12 Heat of formation + Delta-G solvation = -105.998948 kcal Electronic energy + Delta-G solvation = -30731.420991 eV Core-core repulsion = 26356.941663 eV Total energy + Delta-G solvation = -4374.479328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.96907 -48.67476 -39.43239 -38.80013 -36.82398 -34.28239 -33.71445 -32.25041 -30.84773 -30.24978 -29.19920 -28.45448 -26.32638 -24.81406 -23.63970 -22.93967 -21.70468 -20.65421 -20.20329 -19.35944 -17.56806 -17.21495 -17.17405 -17.13190 -16.34140 -15.86650 -15.67328 -15.18180 -14.85442 -14.81147 -14.38188 -14.24164 -13.87045 -13.78350 -13.63641 -13.25770 -13.18348 -12.91431 -12.62074 -12.58987 -12.25850 -12.15745 -12.04697 -11.84180 -11.72689 -11.65262 -11.40430 -10.99663 -10.92412 -10.80556 -10.71649 -10.56924 -10.34341 -10.25137 -9.89482 -9.66173 -9.27112 -9.01720 -8.93180 -8.45755 -8.29897 -6.93455 -5.79570 -3.05251 0.95623 0.99989 3.32284 3.40658 3.45391 3.49604 3.52840 3.90605 4.12421 4.27881 4.53019 4.60788 4.70328 4.93144 5.11895 5.12591 5.37414 5.44807 5.48273 5.49232 5.56640 5.61316 5.70024 5.76710 5.87784 5.93003 5.93825 5.97407 6.00960 6.02851 6.07350 6.15590 6.17709 6.25913 6.37772 6.43096 6.45014 6.57634 6.61222 6.68507 6.80202 6.87002 7.06847 7.25124 7.71012 8.26458 8.40104 8.98256 9.51881 10.05546 10.41417 11.42532 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.004196 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.954588 B = 6670.964993 C = 8575.984400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.164 4.164 8 N -0.716 5.716 9 C -0.228 4.228 10 H 0.066 0.934 11 C -0.006 4.006 12 N -0.933 5.933 13 Si 0.895 3.105 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.290 1.290 17 N -0.697 5.697 18 C 0.532 3.468 19 O -0.569 6.569 20 C -0.140 4.140 21 C -0.063 4.063 22 C -0.079 4.079 23 C -0.123 4.123 24 C 0.084 3.916 25 F -0.140 7.140 26 C -0.132 4.132 27 C -0.125 4.125 28 C 0.102 3.898 29 F -0.123 7.123 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.378 0.622 39 H 0.254 0.746 40 H 0.405 0.595 41 H 0.124 0.876 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.144 0.856 46 H 0.142 0.858 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 0.985 6.537 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.099 0.901 4 C -0.172 4.172 5 C 0.060 3.940 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.359 4.359 10 H 0.084 0.916 11 C -0.202 4.202 12 N -0.582 5.582 13 Si 0.727 3.273 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.217 1.217 17 N -0.349 5.349 18 C 0.319 3.681 19 O -0.450 6.450 20 C -0.180 4.180 21 C -0.100 4.100 22 C -0.080 4.080 23 C -0.142 4.142 24 C 0.065 3.935 25 F -0.118 7.118 26 C -0.151 4.151 27 C -0.144 4.144 28 C 0.083 3.917 29 F -0.101 7.101 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.213 0.787 39 H 0.064 0.936 40 H 0.242 0.758 41 H 0.142 0.858 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.161 0.839 46 H 0.159 0.841 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.965 1.878 6.599 10.513 hybrid contribution 1.167 -0.649 0.431 1.403 sum -6.798 1.230 7.030 9.857 Atomic orbital electron populations 1.22202 0.96465 1.01505 1.01814 1.20776 0.92340 0.97704 0.84768 0.90054 1.22202 0.97796 1.00566 0.96632 1.20274 0.89715 0.95845 0.88195 0.93496 1.22425 1.01510 1.00328 0.98113 1.42440 1.18674 1.39989 1.34817 1.19136 0.93265 1.13055 1.10462 0.91638 1.24527 0.98206 0.98584 0.98869 1.69569 1.37990 1.24558 1.26070 0.86435 0.84876 0.77891 0.78129 1.21188 1.21711 1.21711 1.45960 1.65840 1.14415 1.08666 1.20308 0.76114 0.86829 0.84841 1.90603 1.52126 1.16351 1.85872 1.21661 1.05998 0.98377 0.91920 1.20299 1.02622 0.97482 0.89647 1.19892 0.91241 0.99338 0.97550 1.20897 1.00957 0.99268 0.93078 1.17610 0.87089 0.99402 0.89426 1.91496 1.68511 1.85003 1.66821 1.20901 0.90962 1.02194 1.01031 1.21007 1.01188 0.98917 0.93325 1.17639 0.86936 0.98203 0.88941 1.91598 1.67784 1.84269 1.66440 0.92486 0.92279 0.92896 0.91803 0.90962 0.94631 0.92903 0.93640 0.78711 0.93645 0.75753 0.85793 0.89797 0.89559 0.90029 0.83853 0.84062 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 2 C 0.15 2.38 2.57 -67.93 -0.17 2.21 16 3 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.13 -1.99 4.43 -26.73 -0.12 -2.10 16 5 C 0.17 3.13 2.89 -67.93 -0.20 2.93 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 8 N -0.72 -15.91 3.84 -53.42 -0.21 -16.12 16 9 C -0.23 -5.88 9.93 -15.06 -0.15 -6.03 16 10 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 11 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 12 N -0.93 -24.65 12.78 55.49 0.71 -23.94 16 13 Si 0.90 21.98 29.55 -169.99 -5.02 16.95 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 N -0.70 -12.27 3.80 -53.80 -0.20 -12.47 16 18 C 0.53 10.17 7.79 -10.99 -0.09 10.09 16 19 O -0.57 -12.17 15.64 5.56 0.09 -12.09 16 20 C -0.14 -2.45 5.68 -27.88 -0.16 -2.60 16 21 C -0.06 -1.00 4.41 -27.88 -0.12 -1.12 16 22 C -0.08 -1.15 5.14 -104.57 -0.54 -1.69 16 23 C -0.12 -1.55 9.66 -39.53 -0.38 -1.93 16 24 C 0.08 1.03 7.30 -39.43 -0.29 0.74 16 25 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 26 C -0.13 -1.50 10.02 -39.52 -0.40 -1.90 16 27 C -0.13 -1.60 10.02 -39.52 -0.40 -2.00 16 28 C 0.10 1.60 7.24 -39.42 -0.29 1.31 16 29 F -0.12 -2.30 16.56 2.25 0.04 -2.26 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.38 8.56 5.70 -40.82 -0.23 8.33 16 39 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.40 7.25 6.51 -40.82 -0.27 6.98 16 41 H 0.12 2.59 7.86 -51.93 -0.41 2.18 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.53 7.75 -51.93 -0.40 1.13 16 44 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 45 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 46 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -28.56 397.42 -8.41 -36.97 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -7.16 Total: 15.25 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.68 Total: -6.60 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.30 Total: -52.53 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.93 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.56 -8.41 -36.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146639440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.029 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds