Wall clock time and date at job start Tue Mar 31 2020 23:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47007 * 239.99792 * 2 1 3 5 5 C 1.53002 * 109.46905 * 175.00247 * 4 2 1 6 6 H 1.09000 * 109.47046 * 305.00258 * 5 4 2 7 7 C 1.53006 * 109.46941 * 185.00191 * 5 4 2 8 8 N 1.46496 * 109.46969 * 65.00400 * 5 4 2 9 9 C 1.36945 * 119.99678 * 204.99856 * 8 5 4 10 10 H 1.07994 * 119.99851 * 359.97438 * 9 8 5 11 11 C 1.38809 * 119.99808 * 179.97438 * 9 8 5 12 12 N 1.31621 * 120.00416 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99933 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47106 * 60.00051 * 13 11 9 15 15 H 1.48507 * 109.47028 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47025 * 300.00062 * 13 11 9 17 17 N 1.46504 * 109.46741 * 120.00371 * 2 1 3 18 18 C 1.34776 * 119.99735 * 274.99417 * 17 2 1 19 19 O 1.21282 * 119.99940 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00035 * 179.97438 * 18 17 2 21 21 C 1.53006 * 109.47184 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.47184 * 180.02562 * 21 20 18 23 23 C 1.38196 * 120.00459 * 264.72518 * 22 21 20 24 24 C 1.38423 * 120.00387 * 179.76609 * 23 22 21 25 25 F 1.35102 * 120.00661 * 180.27268 * 24 23 22 26 26 C 1.38475 * 119.99768 * 0.53761 * 24 23 22 27 27 C 1.38160 * 120.00064 * 359.71613 * 26 24 23 28 28 C 1.38430 * 119.99487 * 85.00174 * 22 21 20 29 29 F 1.35099 * 120.00346 * 359.97438 * 28 22 21 30 30 H 1.08999 * 109.47062 * 300.00155 * 1 2 3 31 31 H 1.09000 * 109.46949 * 59.99825 * 1 2 3 32 32 H 1.08999 * 109.47549 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47319 * 295.00151 * 4 2 1 34 34 H 1.09001 * 109.46790 * 55.00375 * 4 2 1 35 35 H 1.08995 * 109.46951 * 59.99900 * 7 5 4 36 36 H 1.08999 * 109.46741 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.46618 * 299.99612 * 7 5 4 38 38 H 0.96997 * 120.00939 * 24.99454 * 8 5 4 39 39 H 0.96994 * 120.00380 * 179.97438 * 12 11 9 40 40 H 0.96998 * 120.00303 * 94.99591 * 17 2 1 41 41 H 1.09001 * 109.46665 * 60.00498 * 20 18 17 42 42 H 1.08993 * 109.47304 * 300.00054 * 20 18 17 43 43 H 1.09001 * 109.46801 * 300.00442 * 21 20 18 44 44 H 1.09001 * 109.46998 * 60.00038 * 21 20 18 45 45 H 1.08007 * 119.99725 * 0.02562 * 23 22 21 46 46 H 1.07997 * 120.00031 * 179.70019 * 26 24 23 47 47 H 1.08002 * 120.00255 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 1 3.8571 0.4357 -1.2677 7 6 4.0645 -1.2251 -2.6240 8 7 4.1536 -1.3344 -0.1824 9 6 5.3943 -0.9858 0.2807 10 1 5.9389 -0.1797 -0.1883 11 6 5.9520 -1.6685 1.3529 12 7 5.2885 -2.6513 1.9242 13 14 7.6442 -1.1926 1.9851 14 1 7.6253 0.2234 2.4321 15 1 8.0101 -2.0680 3.1275 16 1 8.6425 -1.3552 0.8978 17 7 2.0183 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3571 19 8 1.8583 1.1583 2.4117 20 6 2.6487 -0.7289 3.5877 21 6 2.6998 0.2541 4.7591 22 6 3.2021 -0.4563 5.9896 23 6 2.3041 -0.9769 6.9020 24 6 2.7654 -1.6337 8.0298 25 9 1.8876 -2.1474 8.9190 26 6 4.1269 -1.7594 8.2494 27 6 5.0247 -1.2344 7.3399 28 6 4.5631 -0.5824 6.2088 29 9 5.4410 -0.0691 5.3194 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 3.6264 -0.6888 -3.4657 36 1 5.1509 -1.1486 -2.6697 37 1 3.7723 -2.2742 -2.6698 38 1 3.6647 -2.0586 0.2387 39 1 5.6784 -3.1286 2.6732 40 1 2.2489 -1.6319 1.1526 41 1 3.6478 -1.1215 3.3986 42 1 1.9758 -1.5506 3.8326 43 1 3.3725 1.0761 4.5145 44 1 1.7005 0.6464 4.9481 45 1 1.2422 -0.8749 6.7330 46 1 4.4868 -2.2675 9.1317 47 1 6.0865 -1.3320 7.5114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146639440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:12 Heat of formation + Delta-G solvation = -120.092127 kcal Electronic energy + Delta-G solvation = -30732.032117 eV Core-core repulsion = 26356.941663 eV Total energy + Delta-G solvation = -4375.090454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.97153 -49.94206 -40.84728 -39.91767 -38.32493 -35.83327 -35.01218 -33.99835 -32.25100 -31.37150 -30.51736 -29.99355 -27.58523 -26.04384 -25.54903 -23.99070 -22.88919 -21.95195 -21.65996 -20.85872 -19.09499 -18.67932 -18.32845 -18.27102 -17.67902 -17.21848 -16.83311 -16.61754 -16.38262 -16.25876 -15.59526 -15.47116 -15.40273 -15.35162 -14.93623 -14.59089 -14.34109 -14.28674 -14.00377 -13.78283 -13.59836 -13.42710 -13.38629 -13.29471 -13.12915 -12.87523 -12.77813 -12.63534 -12.54676 -12.28150 -12.17528 -12.04286 -11.92159 -11.69331 -11.58411 -11.39061 -10.85711 -10.70509 -10.12403 -9.77282 -9.55381 -8.80210 -7.84750 -5.05947 -0.10704 0.00113 1.43538 1.48235 1.50122 1.87605 2.28042 2.55669 2.61211 3.10113 3.21337 3.48885 3.49517 3.63302 3.82619 3.97207 4.02887 4.07133 4.09005 4.19984 4.25943 4.31122 4.41546 4.58430 4.62857 4.73188 4.75178 4.84907 4.87946 4.88769 4.93244 4.94830 4.98856 5.02301 5.10008 5.14773 5.16402 5.17880 5.27716 5.39343 5.43626 5.61156 5.64619 5.76198 5.85611 6.38051 6.79202 7.47631 7.49316 8.19903 8.47512 9.35747 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.004196 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.954588 B = 6670.964993 C = 8575.984400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.145 3.855 3 H 0.053 0.947 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.027 0.973 7 C -0.154 4.154 8 N -0.719 5.719 9 C -0.228 4.228 10 H 0.053 0.947 11 C -0.042 4.042 12 N -0.937 5.937 13 Si 0.931 3.069 14 H -0.297 1.297 15 H -0.293 1.293 16 H -0.289 1.289 17 N -0.692 5.692 18 C 0.524 3.476 19 O -0.597 6.597 20 C -0.131 4.131 21 C -0.054 4.054 22 C -0.089 4.089 23 C -0.118 4.118 24 C 0.086 3.914 25 F -0.136 7.136 26 C -0.119 4.119 27 C -0.124 4.124 28 C 0.067 3.933 29 F -0.151 7.151 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.048 0.952 38 H 0.376 0.624 39 H 0.248 0.752 40 H 0.404 0.596 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.164 0.836 46 H 0.175 0.825 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 -0.140 6.640 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.071 0.929 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.045 0.955 7 C -0.214 4.214 8 N -0.362 5.362 9 C -0.361 4.361 10 H 0.071 0.929 11 C -0.237 4.237 12 N -0.588 5.588 13 Si 0.763 3.237 14 H -0.224 1.224 15 H -0.219 1.219 16 H -0.216 1.216 17 N -0.343 5.343 18 C 0.311 3.689 19 O -0.480 6.480 20 C -0.171 4.171 21 C -0.092 4.092 22 C -0.090 4.090 23 C -0.136 4.136 24 C 0.066 3.934 25 F -0.115 7.115 26 C -0.137 4.137 27 C -0.142 4.142 28 C 0.048 3.952 29 F -0.130 7.130 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.242 0.758 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.182 0.818 46 H 0.192 0.808 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.703 0.747 6.661 11.793 hybrid contribution 1.684 -0.273 0.391 1.750 sum -8.020 0.474 7.052 10.690 Atomic orbital electron populations 1.22088 0.93818 1.02663 1.02253 1.20921 0.94344 0.96131 0.84595 0.92891 1.22117 0.94742 1.01549 0.97359 1.20485 0.92240 0.94294 0.87631 0.95532 1.22276 1.00018 1.00840 0.98233 1.42481 1.17634 1.40179 1.35896 1.19216 0.94519 1.12213 1.10142 0.92916 1.24873 0.99882 0.99321 0.99578 1.69623 1.38188 1.24903 1.26038 0.85867 0.83393 0.76822 0.77576 1.22442 1.21911 1.21560 1.46028 1.65122 1.14281 1.08875 1.20625 0.75907 0.86600 0.85724 1.90578 1.53599 1.17453 1.86383 1.21567 1.04305 0.99209 0.92011 1.20144 1.02671 0.96419 0.89918 1.19768 0.91271 1.00350 0.97631 1.21040 1.01629 0.98428 0.92551 1.17695 0.87536 0.98952 0.89187 1.91512 1.68476 1.84865 1.66599 1.21231 0.90321 1.00838 1.01313 1.21221 1.02489 0.98103 0.92418 1.18110 0.87157 1.00063 0.89896 1.91519 1.68734 1.85052 1.67705 0.94110 0.89809 0.91296 0.90516 0.87509 0.91283 0.95351 0.93294 0.78939 0.94304 0.75832 0.89158 0.87491 0.92506 0.88581 0.81810 0.80764 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 2 C 0.14 4.47 2.57 44.99 0.12 4.58 16 3 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 4 C -0.12 -3.26 4.43 30.60 0.14 -3.13 16 5 C 0.16 5.84 2.89 44.99 0.13 5.97 16 6 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 7 C -0.15 -4.99 9.49 71.98 0.68 -4.30 16 8 N -0.72 -32.10 3.84 -322.94 -1.24 -33.34 16 9 C -0.23 -12.03 9.93 84.03 0.83 -11.20 16 10 H 0.05 2.87 7.83 -2.91 -0.02 2.85 16 11 C -0.04 -2.27 5.50 84.86 0.47 -1.81 16 12 N -0.94 -50.34 12.78 21.65 0.28 -50.06 16 13 Si 0.93 46.24 29.55 68.60 2.03 48.26 16 14 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 15 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 17 N -0.69 -24.38 3.80 -442.53 -1.68 -26.06 16 18 C 0.52 20.52 7.79 87.66 0.68 21.20 16 19 O -0.60 -26.36 15.64 -3.04 -0.05 -26.41 16 20 C -0.13 -4.72 5.68 29.85 0.17 -4.55 16 21 C -0.05 -1.77 4.41 29.85 0.13 -1.64 16 22 C -0.09 -2.62 5.14 -19.83 -0.10 -2.72 16 23 C -0.12 -2.78 9.66 22.30 0.22 -2.57 16 24 C 0.09 1.90 7.30 22.37 0.16 2.06 16 25 F -0.14 -2.94 17.27 44.97 0.78 -2.17 16 26 C -0.12 -2.39 10.02 22.31 0.22 -2.17 16 27 C -0.12 -3.04 10.02 22.31 0.22 -2.82 16 28 C 0.07 2.14 7.24 22.37 0.16 2.30 16 29 F -0.15 -6.03 16.56 44.97 0.74 -5.29 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.38 17.01 5.70 -92.71 -0.53 16.48 16 39 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 40 H 0.40 14.38 6.51 -92.71 -0.60 13.77 16 41 H 0.09 3.96 7.86 -2.39 -0.02 3.94 16 42 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 44 H 0.10 2.80 8.01 -2.39 -0.02 2.78 16 45 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 46 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 47 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -64.01 397.42 5.63 -58.38 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.14 Total: 40.43 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 4.92 Total: -3.75 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -2.65 Total: -109.46 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 1.52 Total: -7.45 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -64.01 5.63 -58.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146639440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.711 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds