Wall clock time and date at job start Tue Mar 31 2020 23:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47209 * 2 1 4 4 C 1.53000 * 109.47355 * 120.00202 * 2 1 3 5 5 C 1.52997 * 109.47341 * 184.99895 * 4 2 1 6 6 H 1.09001 * 109.47289 * 304.99525 * 5 4 2 7 7 C 1.53005 * 109.47452 * 184.99601 * 5 4 2 8 8 N 1.46506 * 109.47289 * 64.99653 * 5 4 2 9 9 C 1.34774 * 120.00251 * 205.00099 * 8 5 4 10 10 O 1.21282 * 119.99905 * 0.02562 * 9 8 5 11 11 C 1.50696 * 119.99967 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.46981 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47285 * 179.97438 * 12 11 9 14 14 C 1.38204 * 120.00042 * 264.72634 * 13 12 11 15 15 C 1.38429 * 119.99715 * 179.76749 * 14 13 12 16 16 F 1.35102 * 119.99839 * 180.26658 * 15 14 13 17 17 C 1.38467 * 119.99990 * 0.52820 * 15 14 13 18 18 C 1.38162 * 119.99971 * 359.72094 * 17 15 14 19 19 C 1.38429 * 119.99746 * 84.99626 * 13 12 11 20 20 F 1.35100 * 120.00121 * 359.97438 * 19 13 12 21 21 N 1.46503 * 109.47020 * 239.99862 * 2 1 3 22 22 C 1.36937 * 119.99853 * 84.99874 * 21 2 1 23 23 H 1.07995 * 119.99948 * 0.02562 * 22 21 2 24 24 C 1.38815 * 119.99951 * 179.97438 * 22 21 2 25 25 N 1.31624 * 119.99735 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00217 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47142 * 89.99783 * 26 24 22 28 28 H 1.48497 * 109.47079 * 210.00258 * 26 24 22 29 29 H 1.48503 * 109.47034 * 330.00276 * 26 24 22 30 30 H 1.09001 * 109.47150 * 299.99807 * 1 2 3 31 31 H 1.08993 * 109.47310 * 60.00112 * 1 2 3 32 32 H 1.09009 * 109.47419 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47686 * 64.99711 * 4 2 1 34 34 H 1.09002 * 109.46818 * 304.99934 * 4 2 1 35 35 H 1.09001 * 109.46812 * 300.00216 * 7 5 4 36 36 H 1.09002 * 109.46935 * 59.99874 * 7 5 4 37 37 H 1.08992 * 109.47061 * 179.97438 * 7 5 4 38 38 H 0.97006 * 119.99584 * 25.00028 * 8 5 4 39 39 H 1.09007 * 109.47090 * 299.99748 * 11 9 8 40 40 H 1.08990 * 109.47220 * 59.99884 * 11 9 8 41 41 H 1.08993 * 109.47395 * 299.99665 * 12 11 9 42 42 H 1.09003 * 109.47295 * 60.00149 * 12 11 9 43 43 H 1.08003 * 119.99784 * 0.02562 * 14 13 12 44 44 H 1.08003 * 119.99992 * 179.70851 * 17 15 14 45 45 H 1.08003 * 119.99796 * 179.97438 * 18 17 15 46 46 H 0.97003 * 120.00022 * 265.00341 * 21 2 1 47 47 H 0.96996 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 1 3.9954 -0.9924 0.3868 7 6 4.0852 -1.4383 2.4925 8 7 3.9480 0.7894 1.4923 9 6 5.1612 1.2135 1.0866 10 8 5.9356 0.4341 0.5731 11 6 5.5555 2.6562 1.2710 12 6 6.9702 2.8715 0.7294 13 6 7.3644 4.3144 0.9132 14 6 7.1927 5.2148 -0.1211 15 6 7.5503 6.5412 0.0494 16 9 7.3775 7.4225 -0.9599 17 6 8.0901 6.9635 1.2525 18 6 8.2665 6.0623 2.2848 19 6 7.9035 4.7367 2.1162 20 9 8.0759 3.8555 3.1256 21 7 2.0183 -0.6907 -1.1962 22 6 2.1490 -0.0075 -2.3758 23 1 1.8925 1.0404 -2.4242 24 6 2.6122 -0.6618 -3.5091 25 7 2.9252 -1.9389 -3.4499 26 14 2.7912 0.2702 -5.1180 27 1 4.1534 0.8553 -5.2022 28 1 2.5813 -0.6611 -6.2554 29 1 1.7812 1.3573 -5.1754 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -1.7716 1.2056 34 1 1.6054 -0.2618 2.1369 35 1 3.6546 -1.0593 3.4193 36 1 3.8001 -2.4820 2.3595 37 1 5.1715 -1.3617 2.5380 38 1 3.3284 1.4129 1.9027 39 1 4.8583 3.2955 0.7293 40 1 5.5299 2.9072 2.3313 41 1 7.6676 2.2323 1.2707 42 1 6.9954 2.6206 -0.3311 43 1 6.7757 4.8844 -1.0610 44 1 8.3735 7.9974 1.3839 45 1 8.6879 6.3917 3.2231 46 1 2.2489 -1.6319 -1.1526 47 1 3.2492 -2.3960 -4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146639441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:15 Heat of formation + Delta-G solvation = -112.881099 kcal Electronic energy + Delta-G solvation = -29454.887908 eV Core-core repulsion = 25080.110147 eV Total energy + Delta-G solvation = -4374.777760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.20433 -49.19094 -39.76118 -39.10828 -36.88015 -34.53897 -34.12993 -32.15235 -31.12696 -30.51125 -29.46513 -28.56699 -26.31133 -25.21672 -23.59216 -23.28192 -21.97851 -20.93197 -20.09272 -19.67869 -17.96403 -17.58105 -17.52387 -17.23628 -16.68388 -16.14591 -15.81228 -15.57985 -15.34431 -14.74106 -14.69879 -14.54268 -14.02599 -13.92447 -13.83863 -13.67028 -13.23967 -13.08289 -12.97309 -12.76040 -12.56062 -12.51601 -12.11178 -11.97021 -11.84028 -11.71634 -11.56487 -11.27115 -11.12556 -10.99946 -10.80378 -10.59611 -10.39107 -10.20611 -9.87447 -9.62133 -9.58933 -9.35805 -8.85670 -8.83316 -8.65345 -6.89594 -5.70752 -2.98634 0.59661 0.66584 2.97929 3.00509 3.46676 3.48561 3.51262 3.53178 3.83490 3.85739 4.20441 4.34673 4.62480 4.64138 4.77600 4.89191 5.01627 5.07395 5.19427 5.37975 5.45534 5.49492 5.53063 5.56406 5.59065 5.64576 5.66018 5.72344 5.72604 5.91992 5.97237 6.02105 6.03835 6.06004 6.15863 6.31397 6.38609 6.45131 6.46286 6.59344 6.75632 6.84866 6.96824 7.09196 7.73918 7.84873 8.47640 8.60323 9.58856 10.16626 10.50761 11.52051 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.003099 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.160728 B = 9031.673920 C =10884.623104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.105 0.895 7 C -0.160 4.160 8 N -0.717 5.717 9 C 0.514 3.486 10 O -0.534 6.534 11 C -0.135 4.135 12 C -0.068 4.068 13 C -0.081 4.081 14 C -0.121 4.121 15 C 0.092 3.908 16 F -0.135 7.135 17 C -0.132 4.132 18 C -0.124 4.124 19 C 0.090 3.910 20 F -0.131 7.131 21 N -0.720 5.720 22 C -0.234 4.234 23 H 0.067 0.933 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.902 3.098 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.394 0.606 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.293 15.360 16.256 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.123 0.877 7 C -0.219 4.219 8 N -0.368 5.368 9 C 0.300 3.700 10 O -0.410 6.410 11 C -0.175 4.175 12 C -0.106 4.106 13 C -0.082 4.082 14 C -0.140 4.140 15 C 0.073 3.927 16 F -0.114 7.114 17 C -0.151 4.151 18 C -0.143 4.143 19 C 0.071 3.929 20 F -0.110 7.110 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.084 0.916 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.209 1.209 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.227 0.773 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.860 14.888 15.729 23.040 hybrid contribution -0.242 0.564 -0.761 0.978 sum 7.618 15.452 14.968 22.822 Atomic orbital electron populations 1.22461 0.99603 1.00790 0.99724 1.20212 0.91498 0.95512 0.86570 0.93677 1.22166 0.93847 1.02166 0.98766 1.21020 0.94990 0.80292 0.99791 0.87686 1.22179 1.01479 1.00179 0.98047 1.45975 1.16498 1.11617 1.62728 1.20375 0.81987 0.89811 0.77834 1.90732 1.51066 1.56611 1.42579 1.21607 0.97689 0.94945 1.03228 1.20338 0.96067 0.89744 1.04426 1.19875 0.98927 0.97467 0.91909 1.21068 1.01314 0.91008 1.00598 1.17680 1.01742 0.87431 0.85862 1.91533 1.93283 1.67866 1.58670 1.20970 1.01261 1.01154 0.91725 1.20971 1.01641 0.91218 1.00457 1.17563 1.02244 0.87454 0.85643 1.91522 1.93236 1.67995 1.58238 1.42396 1.77972 1.10554 1.05269 1.19146 1.36423 0.93632 0.87364 0.91551 1.24693 1.02234 0.95922 0.97924 1.69648 1.50899 1.08609 1.28799 0.86266 0.77743 0.78629 0.84018 1.21790 1.21843 1.20916 0.94754 0.92934 0.93549 0.90707 0.92129 0.93222 0.91821 0.92568 0.77319 0.88607 0.89147 0.89315 0.88836 0.83300 0.83827 0.83735 0.78356 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.49 37.15 0.35 -2.52 16 2 C 0.17 3.22 2.84 -67.93 -0.19 3.02 16 3 H 0.05 0.86 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.97 4.29 -26.73 -0.11 -2.09 16 5 C 0.14 2.29 2.52 -67.93 -0.17 2.12 16 6 H 0.11 2.23 7.05 -51.93 -0.37 1.87 16 7 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 8 N -0.72 -10.11 4.45 -53.80 -0.24 -10.35 16 9 C 0.51 8.02 7.79 -10.99 -0.09 7.94 16 10 O -0.53 -10.81 15.64 5.56 0.09 -10.72 16 11 C -0.13 -1.53 5.68 -27.89 -0.16 -1.69 16 12 C -0.07 -0.80 4.41 -27.88 -0.12 -0.92 16 13 C -0.08 -0.82 5.14 -104.56 -0.54 -1.36 16 14 C -0.12 -1.18 9.66 -39.52 -0.38 -1.57 16 15 C 0.09 0.86 7.30 -39.43 -0.29 0.58 16 16 F -0.13 -1.40 17.27 2.25 0.04 -1.37 16 17 C -0.13 -0.99 10.02 -39.52 -0.40 -1.39 16 18 C -0.12 -0.93 10.02 -39.53 -0.40 -1.33 16 19 C 0.09 0.86 7.24 -39.43 -0.29 0.58 16 20 F -0.13 -1.39 16.57 2.25 0.04 -1.35 16 21 N -0.72 -17.55 4.49 -53.43 -0.24 -17.79 16 22 C -0.23 -6.46 9.93 -15.06 -0.15 -6.61 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 26 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.39 4.32 8.60 -40.82 -0.35 3.97 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.12 7.75 -51.93 -0.40 0.72 16 42 H 0.09 1.21 8.01 -51.93 -0.42 0.80 16 43 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 45 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 46 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 402.17 15.07 6.06 6.06 Total: -1.00 -33.21 402.17 -8.51 -41.73 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -7.29 Total: 11.27 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.67 Total: -7.52 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.25 Total: -55.86 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.21 -8.51 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146639441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.155 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds