Wall clock time and date at job start Tue Mar 31 2020 23:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47027 * 180.02562 * 12 11 9 14 14 C 1.38209 * 120.00017 * 264.72604 * 13 12 11 15 15 C 1.38426 * 119.99634 * 179.76717 * 14 13 12 16 16 F 1.35100 * 120.00031 * 180.27248 * 15 14 13 17 17 C 1.38471 * 120.00187 * 0.53172 * 15 14 13 18 18 C 1.38164 * 119.99939 * 359.72333 * 17 15 14 19 19 C 1.38425 * 119.99748 * 85.00378 * 13 12 11 20 20 F 1.35098 * 120.00289 * 359.97438 * 19 13 12 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 36 36 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 37 37 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 38 38 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 39 39 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 40 40 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 41 41 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 42 42 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 43 43 H 1.07994 * 120.00050 * 0.02614 * 14 13 12 44 44 H 1.07999 * 119.99754 * 179.69683 * 17 15 14 45 45 H 1.08001 * 119.99625 * 179.97438 * 18 17 15 46 46 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 6 7.3634 4.3152 -0.9114 14 6 8.0915 4.6975 -2.0221 15 6 8.4489 6.0239 -2.1923 16 9 9.1560 6.3987 -3.2809 17 6 8.0864 6.9659 -1.2443 18 6 7.3630 6.5827 -0.1313 19 6 7.0006 5.2568 0.0362 20 9 6.2932 4.8822 1.1245 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 3.6547 -1.0591 -3.4193 36 1 5.1716 -1.3615 -2.5380 37 1 3.8002 -2.4818 -2.3594 38 1 3.3284 1.4130 -1.9027 39 1 5.5290 2.9085 -2.3301 40 1 4.8577 3.2954 -0.7276 41 1 6.9954 2.6202 0.3316 42 1 7.6673 2.2333 -1.2706 43 1 8.3781 3.9621 -2.7593 44 1 8.3695 7.9999 -1.3747 45 1 7.0806 7.3174 0.6083 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146639442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:17 Heat of formation + Delta-G solvation = -112.135172 kcal Electronic energy + Delta-G solvation = -29551.675048 eV Core-core repulsion = 25176.929633 eV Total energy + Delta-G solvation = -4374.745415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.26002 -49.09591 -39.80838 -39.13532 -36.99195 -34.69122 -34.18136 -32.33479 -31.16875 -30.53009 -29.47887 -28.28479 -26.39372 -25.24472 -23.40259 -23.28055 -22.00865 -21.01903 -20.15876 -19.85775 -17.94036 -17.59063 -17.52567 -17.35297 -16.78122 -16.15249 -15.87627 -15.56966 -15.36156 -14.83623 -14.67517 -14.57584 -14.20742 -14.04671 -13.64026 -13.56054 -13.54250 -13.20187 -12.97952 -12.94531 -12.59676 -12.57834 -12.14710 -12.07627 -11.87502 -11.68943 -11.66087 -11.28397 -11.14903 -11.00095 -10.68703 -10.47062 -10.41898 -10.08039 -9.94513 -9.65354 -9.39627 -9.09510 -8.84417 -8.82792 -8.72089 -6.95142 -6.01413 -3.00738 0.59497 0.65044 2.93992 2.97622 3.42905 3.56508 3.62546 3.74864 3.80045 3.89479 4.18726 4.34609 4.59540 4.74115 4.76276 4.84652 4.98893 5.01500 5.13137 5.33608 5.38266 5.40846 5.47724 5.54582 5.59869 5.61587 5.63251 5.69042 5.71126 5.82777 5.88556 5.94092 5.99274 6.04426 6.06684 6.22529 6.29748 6.37709 6.44632 6.48347 6.63557 6.78113 6.88775 7.01867 7.78399 7.88085 8.54294 8.84003 9.31040 10.17189 10.31796 11.47160 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010565 B = 0.003016 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.604443 B = 9280.345779 C =10911.186345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.132 4.132 5 C 0.144 3.856 6 H 0.101 0.899 7 C -0.160 4.160 8 N -0.717 5.717 9 C 0.515 3.485 10 O -0.534 6.534 11 C -0.134 4.134 12 C -0.068 4.068 13 C -0.083 4.083 14 C -0.123 4.123 15 C 0.088 3.912 16 F -0.137 7.137 17 C -0.131 4.131 18 C -0.123 4.123 19 C 0.095 3.905 20 F -0.126 7.126 21 N -0.731 5.731 22 C -0.325 4.325 23 H 0.061 0.939 24 C -0.044 4.044 25 N -0.944 5.944 26 Si 1.078 2.922 27 H -0.295 1.295 28 H -0.296 1.296 29 H -0.289 1.289 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.394 0.606 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.365 0.635 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 15.921 -16.211 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.040 3.960 6 H 0.119 0.881 7 C -0.219 4.219 8 N -0.368 5.368 9 C 0.300 3.700 10 O -0.410 6.410 11 C -0.174 4.174 12 C -0.105 4.105 13 C -0.084 4.084 14 C -0.141 4.141 15 C 0.069 3.931 16 F -0.115 7.115 17 C -0.150 4.150 18 C -0.142 4.142 19 C 0.076 3.924 20 F -0.104 7.104 21 N -0.374 5.374 22 C -0.456 4.456 23 H 0.079 0.921 24 C -0.242 4.242 25 N -0.590 5.590 26 Si 0.910 3.090 27 H -0.223 1.223 28 H -0.223 1.223 29 H -0.215 1.215 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.198 0.802 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.083 15.436 -14.191 22.472 hybrid contribution -0.848 0.314 -1.828 2.039 sum 7.235 15.750 -16.019 23.601 Atomic orbital electron populations 1.22444 0.99517 1.00703 0.99860 1.20148 0.91500 0.95530 0.86076 0.93516 1.22189 0.93913 1.02058 0.98938 1.20986 0.94919 0.80480 0.99635 0.88086 1.22180 1.01522 1.00114 0.98060 1.45959 1.16549 1.11520 1.62808 1.20402 0.81956 0.89861 0.77754 1.90731 1.51122 1.56658 1.42499 1.21608 0.97866 0.94825 1.03147 1.20332 0.95960 0.89740 1.04514 1.19873 0.98336 0.96587 0.93615 1.20955 0.99743 0.94812 0.98633 1.17652 0.96595 0.93320 0.85551 1.91518 1.76087 1.91978 1.51966 1.20973 1.00128 1.00187 0.93683 1.21028 0.99489 0.94753 0.98948 1.17629 0.96309 0.92964 0.85528 1.91582 1.75563 1.91898 1.51356 1.42403 1.79129 1.09651 1.06261 1.19974 1.41642 0.94879 0.89116 0.92090 1.25666 0.99500 0.97496 1.01505 1.70840 1.51561 1.08219 1.28378 0.83255 0.75844 0.74165 0.75746 1.22330 1.22290 1.21472 0.93689 0.92848 0.94623 0.90853 0.91950 0.93108 0.92501 0.91859 0.77265 0.89001 0.88702 0.88883 0.89263 0.83648 0.83823 0.83583 0.80155 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.18 3.39 2.84 -67.93 -0.19 3.19 16 3 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 4 C -0.13 -2.00 4.29 -26.73 -0.11 -2.12 16 5 C 0.14 2.30 2.52 -67.93 -0.17 2.13 16 6 H 0.10 2.15 7.05 -51.93 -0.37 1.78 16 7 C -0.16 -2.17 9.48 37.16 0.35 -1.81 16 8 N -0.72 -10.16 4.45 -53.80 -0.24 -10.40 16 9 C 0.51 8.06 7.79 -10.98 -0.09 7.97 16 10 O -0.53 -10.84 15.64 5.56 0.09 -10.75 16 11 C -0.13 -1.53 5.68 -27.88 -0.16 -1.69 16 12 C -0.07 -0.80 4.41 -27.88 -0.12 -0.92 16 13 C -0.08 -0.84 5.14 -104.56 -0.54 -1.38 16 14 C -0.12 -1.07 9.66 -39.52 -0.38 -1.45 16 15 C 0.09 0.76 7.30 -39.43 -0.29 0.48 16 16 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 17 C -0.13 -0.98 10.02 -39.52 -0.40 -1.37 16 18 C -0.12 -1.01 10.02 -39.52 -0.40 -1.41 16 19 C 0.10 1.01 7.24 -39.43 -0.29 0.72 16 20 F -0.13 -1.63 16.56 2.25 0.04 -1.60 16 21 N -0.73 -18.02 4.49 -53.43 -0.24 -18.26 16 22 C -0.33 -9.20 9.93 -15.06 -0.15 -9.35 16 23 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 24 C -0.04 -1.31 5.50 -17.43 -0.10 -1.40 16 25 N -0.94 -29.86 13.70 55.49 0.76 -29.10 16 26 Si 1.08 26.96 29.92 -169.99 -5.09 21.87 16 27 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.39 4.37 8.60 -40.82 -0.35 4.02 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.33 7.75 -51.93 -0.40 0.93 16 42 H 0.09 1.01 8.01 -51.93 -0.42 0.59 16 43 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.37 9.43 6.63 -40.82 -0.27 9.15 16 47 H 0.25 7.92 6.77 -40.82 -0.28 7.64 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -34.81 400.46 -8.46 -43.27 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -7.18 Total: 11.14 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.67 Total: -10.98 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.28 Total: -57.76 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 26.96 SS G_CDS: -5.09 Total: 21.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.81 -8.46 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146639442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.869 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds