Wall clock time and date at job start Tue Mar 31 2020 23:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47027 * 180.02562 * 12 11 9 14 14 C 1.38209 * 120.00017 * 264.72604 * 13 12 11 15 15 C 1.38426 * 119.99634 * 179.76717 * 14 13 12 16 16 F 1.35100 * 120.00031 * 180.27248 * 15 14 13 17 17 C 1.38471 * 120.00187 * 0.53172 * 15 14 13 18 18 C 1.38164 * 119.99939 * 359.72333 * 17 15 14 19 19 C 1.38425 * 119.99748 * 85.00378 * 13 12 11 20 20 F 1.35098 * 120.00289 * 359.97438 * 19 13 12 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 36 36 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 37 37 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 38 38 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 39 39 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 40 40 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 41 41 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 42 42 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 43 43 H 1.07994 * 120.00050 * 0.02614 * 14 13 12 44 44 H 1.07999 * 119.99754 * 179.69683 * 17 15 14 45 45 H 1.08001 * 119.99625 * 179.97438 * 18 17 15 46 46 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 6 7.3634 4.3152 -0.9114 14 6 8.0915 4.6975 -2.0221 15 6 8.4489 6.0239 -2.1923 16 9 9.1560 6.3987 -3.2809 17 6 8.0864 6.9659 -1.2443 18 6 7.3630 6.5827 -0.1313 19 6 7.0006 5.2568 0.0362 20 9 6.2932 4.8822 1.1245 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 3.6547 -1.0591 -3.4193 36 1 5.1716 -1.3615 -2.5380 37 1 3.8002 -2.4818 -2.3594 38 1 3.3284 1.4130 -1.9027 39 1 5.5290 2.9085 -2.3301 40 1 4.8577 3.2954 -0.7276 41 1 6.9954 2.6202 0.3316 42 1 7.6673 2.2333 -1.2706 43 1 8.3781 3.9621 -2.7593 44 1 8.3695 7.9999 -1.3747 45 1 7.0806 7.3174 0.6083 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146639442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:17 Heat of formation + Delta-G solvation = -133.602870 kcal Electronic energy + Delta-G solvation = -29552.605957 eV Core-core repulsion = 25176.929633 eV Total energy + Delta-G solvation = -4375.676324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.97996 -49.94525 -40.99791 -39.94478 -38.48790 -36.28984 -35.14488 -34.17119 -32.34357 -31.35332 -30.39573 -30.11712 -27.68077 -26.17222 -25.53513 -23.99500 -22.96617 -22.20168 -21.43167 -21.30093 -19.47407 -18.71045 -18.41185 -18.28011 -17.83878 -17.24743 -16.87060 -16.70462 -16.44540 -16.33948 -15.97355 -15.48187 -15.42591 -15.40182 -15.05117 -14.77015 -14.62340 -14.39392 -14.15707 -13.80283 -13.62818 -13.51517 -13.49812 -13.38140 -13.13759 -12.93315 -12.80267 -12.64115 -12.52161 -12.19245 -12.13401 -11.97294 -11.90572 -11.86189 -11.57850 -11.18730 -10.93606 -10.86476 -10.14585 -10.00078 -9.57179 -9.05784 -8.35397 -5.26735 -0.12268 -0.00490 1.52410 1.63925 1.70739 1.76610 2.20539 2.38214 2.70404 3.09917 3.17906 3.43720 3.44986 3.61842 3.71666 3.81337 3.87175 3.96712 4.02124 4.06771 4.17047 4.21741 4.31078 4.46600 4.54788 4.62748 4.69491 4.71521 4.73379 4.76147 4.85680 4.93971 4.94900 4.98318 4.99322 5.00729 5.09410 5.17470 5.19024 5.26564 5.35960 5.53335 5.59775 5.66235 5.75545 6.53071 6.63573 7.15244 7.36913 8.05850 8.16700 9.17090 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010565 B = 0.003016 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.604443 B = 9280.345779 C =10911.186345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.039 0.961 7 C -0.150 4.150 8 N -0.706 5.706 9 C 0.505 3.495 10 O -0.590 6.590 11 C -0.122 4.122 12 C -0.064 4.064 13 C -0.089 4.089 14 C -0.119 4.119 15 C 0.084 3.916 16 F -0.139 7.139 17 C -0.119 4.119 18 C -0.117 4.117 19 C 0.070 3.930 20 F -0.147 7.147 21 N -0.744 5.744 22 C -0.313 4.313 23 H 0.060 0.940 24 C -0.110 4.110 25 N -0.980 5.980 26 Si 1.121 2.879 27 H -0.294 1.294 28 H -0.270 1.270 29 H -0.292 1.292 30 H 0.041 0.959 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.413 0.587 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.160 0.840 44 H 0.173 0.827 45 H 0.167 0.833 46 H 0.355 0.645 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 18.688 -18.810 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 H 0.060 0.940 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.058 0.942 7 C -0.208 4.208 8 N -0.358 5.358 9 C 0.293 3.707 10 O -0.471 6.471 11 C -0.162 4.162 12 C -0.101 4.101 13 C -0.090 4.090 14 C -0.138 4.138 15 C 0.065 3.935 16 F -0.118 7.118 17 C -0.138 4.138 18 C -0.135 4.135 19 C 0.051 3.949 20 F -0.126 7.126 21 N -0.386 5.386 22 C -0.445 4.445 23 H 0.078 0.922 24 C -0.301 4.301 25 N -0.629 5.629 26 Si 0.947 3.053 27 H -0.222 1.222 28 H -0.195 1.195 29 H -0.218 1.218 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.250 0.750 39 H 0.150 0.850 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.178 0.822 44 H 0.190 0.810 45 H 0.185 0.815 46 H 0.187 0.813 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.210 18.261 -16.861 25.879 hybrid contribution -0.593 -0.475 -1.129 1.361 sum 6.618 17.785 -17.990 26.149 Atomic orbital electron populations 1.22295 0.97721 1.00781 1.00749 1.20462 0.92571 0.95193 0.85708 0.94002 1.22090 0.93017 1.02052 0.98519 1.20783 0.95353 0.81682 0.98100 0.94217 1.22069 1.00465 1.00063 0.98196 1.45874 1.16506 1.11283 1.62169 1.21207 0.81699 0.91222 0.76587 1.90709 1.52840 1.58503 1.45016 1.21605 0.97470 0.91512 1.05618 1.20183 0.96512 0.91236 1.02207 1.19663 0.99527 0.95318 0.94485 1.21038 0.99005 0.95461 0.98288 1.17780 0.96563 0.93487 0.85719 1.91519 1.76156 1.91957 1.52143 1.21278 0.98622 1.01348 0.92519 1.21248 0.98784 0.93973 0.99540 1.17981 0.97310 0.94275 0.85322 1.91526 1.76306 1.92239 1.52518 1.42622 1.79451 1.09335 1.07165 1.20271 1.39061 0.94846 0.90357 0.92174 1.26974 1.00314 0.97699 1.05067 1.70947 1.54542 1.09457 1.27923 0.82704 0.76415 0.73781 0.72398 1.22175 1.19527 1.21832 0.94018 0.95391 0.90240 0.90813 0.87292 0.89720 0.94228 0.91482 0.75030 0.85022 0.88294 0.92539 0.89237 0.82234 0.80992 0.81523 0.81300 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.49 71.98 0.68 -4.49 16 2 C 0.17 6.25 2.84 44.99 0.13 6.38 16 3 H 0.04 1.60 7.56 -2.38 -0.02 1.58 16 4 C -0.12 -3.33 4.29 30.60 0.13 -3.20 16 5 C 0.15 4.62 2.52 45.00 0.11 4.73 16 6 H 0.04 1.78 7.05 -2.39 -0.02 1.76 16 7 C -0.15 -3.85 9.48 71.98 0.68 -3.17 16 8 N -0.71 -19.31 4.45 -442.51 -1.97 -21.28 16 9 C 0.51 16.05 7.79 87.66 0.68 16.73 16 10 O -0.59 -25.43 15.64 -3.04 -0.05 -25.47 16 11 C -0.12 -2.70 5.68 29.85 0.17 -2.53 16 12 C -0.06 -1.54 4.41 29.85 0.13 -1.41 16 13 C -0.09 -1.75 5.14 -19.83 -0.10 -1.85 16 14 C -0.12 -1.87 9.66 22.31 0.22 -1.66 16 15 C 0.08 1.24 7.30 22.37 0.16 1.41 16 16 F -0.14 -2.22 17.27 44.97 0.78 -1.45 16 17 C -0.12 -1.43 10.02 22.31 0.22 -1.20 16 18 C -0.12 -1.67 10.02 22.31 0.22 -1.45 16 19 C 0.07 1.45 7.24 22.37 0.16 1.61 16 20 F -0.15 -3.93 16.56 44.97 0.74 -3.18 16 21 N -0.74 -37.48 4.49 -322.94 -1.45 -38.93 16 22 C -0.31 -18.10 9.93 84.03 0.83 -17.27 16 23 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 24 C -0.11 -6.67 5.50 84.86 0.47 -6.21 16 25 N -0.98 -64.37 13.70 21.65 0.30 -64.07 16 26 Si 1.12 55.46 29.92 68.60 2.05 57.52 16 27 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.41 8.01 8.60 -92.71 -0.80 7.21 16 39 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 1.76 7.75 -2.39 -0.02 1.75 16 42 H 0.09 2.10 8.01 -2.39 -0.02 2.08 16 43 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.36 19.15 6.63 -92.71 -0.61 18.54 16 47 H 0.24 15.90 6.77 -92.71 -0.63 15.27 16 Total: -1.00 -81.23 400.46 5.03 -76.19 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.28 Total: 34.26 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.91 Total: -13.58 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -3.12 Total: -124.29 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 1.52 Total: -4.63 kcal Atomic # 14 Polarization: 55.46 SS G_CDS: 2.05 Total: 57.52 kcal Total: -81.23 5.03 -76.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146639442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.411 kcal (2) G-P(sol) polarization free energy of solvation -81.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds