Wall clock time and date at job start Tue Mar 31 2020 23:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47023 * 2 1 4 4 C 1.53002 * 109.46755 * 240.00243 * 2 1 3 5 5 C 1.53002 * 109.47115 * 174.02946 * 4 2 1 6 6 H 1.09007 * 109.46921 * 304.09213 * 5 4 2 7 7 C 1.53000 * 109.47325 * 184.09402 * 5 4 2 8 8 N 1.46501 * 109.47372 * 64.08744 * 5 4 2 9 9 C 1.34775 * 120.00088 * 206.46216 * 8 5 4 10 10 O 1.21276 * 120.00155 * 5.14223 * 9 8 5 11 11 C 1.50704 * 119.99725 * 185.13757 * 9 8 5 12 12 C 1.52999 * 109.46858 * 183.96981 * 11 9 8 13 13 C 1.50695 * 109.47191 * 180.02562 * 12 11 9 14 14 C 1.38255 * 120.00200 * 264.72627 * 13 12 11 15 15 C 1.38215 * 120.07159 * 179.76744 * 14 13 12 16 16 C 1.38250 * 120.07048 * 0.50503 * 15 14 13 17 17 C 1.38377 * 120.00189 * 359.75013 * 16 15 14 18 18 F 1.35093 * 120.03414 * 179.97438 * 17 16 15 19 19 C 1.38377 * 120.00191 * 84.99700 * 13 12 11 20 20 F 1.35097 * 120.03094 * 0.02562 * 19 13 12 21 21 N 1.46498 * 109.47466 * 120.00075 * 2 1 3 22 22 C 1.36934 * 119.99894 * 270.57307 * 21 2 1 23 23 H 1.07998 * 120.00175 * 350.65172 * 22 21 2 24 24 C 1.38813 * 119.99751 * 170.66092 * 22 21 2 25 25 N 1.31621 * 120.00008 * 178.45855 * 24 22 21 26 26 Si 1.86798 * 120.00208 * 358.45129 * 24 22 21 27 27 H 1.48498 * 109.46988 * 90.86766 * 26 24 22 28 28 H 1.48501 * 109.47161 * 210.86544 * 26 24 22 29 29 H 1.48499 * 109.47132 * 330.86545 * 26 24 22 30 30 H 1.09000 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47116 * 299.99813 * 1 2 3 32 32 H 1.08997 * 109.47086 * 59.99800 * 1 2 3 33 33 H 1.09000 * 109.47488 * 54.02627 * 4 2 1 34 34 H 1.09006 * 109.47016 * 294.02498 * 4 2 1 35 35 H 1.08999 * 109.46666 * 299.99737 * 7 5 4 36 36 H 1.09003 * 109.47223 * 59.99257 * 7 5 4 37 37 H 1.08993 * 109.47229 * 179.97438 * 7 5 4 38 38 H 0.97003 * 119.99489 * 26.19042 * 8 5 4 39 39 H 1.08992 * 109.47405 * 303.97420 * 11 9 8 40 40 H 1.09001 * 109.46924 * 63.97342 * 11 9 8 41 41 H 1.09004 * 109.47378 * 300.00004 * 12 11 9 42 42 H 1.09001 * 109.47059 * 60.00443 * 12 11 9 43 43 H 1.08003 * 119.96178 * 0.02562 * 14 13 12 44 44 H 1.08003 * 119.96370 * 180.25279 * 15 14 13 45 45 H 1.08000 * 120.00126 * 179.76934 * 16 15 14 46 46 H 0.97003 * 120.00064 * 90.56863 * 21 2 1 47 47 H 0.96995 * 120.00477 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5626 -0.5926 -1.3267 6 1 3.8397 0.4614 -1.3052 7 6 4.0624 -1.2250 -2.6271 8 7 4.1694 -1.2804 -0.1844 9 6 5.3754 -0.8906 0.2739 10 8 5.9163 0.0872 -0.1976 11 6 6.0518 -1.6696 1.3725 12 6 7.3501 -0.9655 1.7719 13 6 8.0269 -1.7447 2.8699 14 6 7.8241 -1.3948 4.1920 15 6 8.4403 -2.1115 5.2005 16 6 9.2690 -3.1734 4.8889 17 6 9.4782 -3.5229 3.5665 18 9 10.2882 -4.5601 3.2612 19 6 8.8557 -2.8071 2.5548 20 9 9.0590 -3.1459 1.2629 21 7 2.0184 -0.6906 1.1961 22 6 2.2355 0.0116 2.3515 23 1 2.1935 1.0908 2.3435 24 6 2.5097 -0.6636 3.5329 25 7 2.7483 0.0121 4.6369 26 14 2.5398 -2.5312 3.5560 27 1 3.9183 -3.0074 3.2762 28 1 2.1100 -3.0167 4.8919 29 1 1.6152 -3.0540 2.5182 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.5919 -0.2729 -2.1361 34 1 1.7665 -1.7752 -1.1974 35 1 3.7853 -2.2789 -2.6486 36 1 3.6108 -0.7132 -3.4770 37 1 5.1470 -1.1329 -2.6824 38 1 3.7015 -2.0139 0.2446 39 1 5.3900 -1.7289 2.2364 40 1 6.2781 -2.6753 1.0183 41 1 8.0121 -0.9062 0.9079 42 1 7.1239 0.0403 2.1260 43 1 7.1803 -0.5630 4.4372 44 1 8.2775 -1.8392 6.2328 45 1 9.7528 -3.7303 5.6776 46 1 2.1880 -1.6453 1.1697 47 1 2.9395 -0.4596 5.4626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146822175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:20 Heat of formation + Delta-G solvation = -101.390411 kcal Electronic energy + Delta-G solvation = -30631.888428 eV Core-core repulsion = 26257.608942 eV Total energy + Delta-G solvation = -4374.279487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.49146 -48.56882 -39.62806 -38.96832 -37.01973 -34.44084 -33.81443 -32.31699 -31.03815 -30.34043 -29.61033 -28.99163 -26.42923 -24.96817 -23.38330 -22.86448 -21.92946 -20.78503 -20.47667 -19.55255 -17.92612 -17.60997 -17.32338 -17.07518 -16.48332 -16.28870 -15.93301 -15.07792 -14.97671 -14.86841 -14.82162 -14.44795 -14.33827 -13.92053 -13.59245 -13.36712 -13.22681 -12.94606 -12.69259 -12.63182 -12.48721 -12.32895 -12.11788 -12.07573 -11.92062 -11.78910 -11.66016 -11.18978 -11.12793 -11.00409 -10.80918 -10.68093 -10.45291 -10.41777 -10.03238 -9.64530 -9.38608 -9.01659 -8.89485 -8.79534 -8.49773 -7.28976 -5.83144 -3.18200 0.87699 0.90233 3.18304 3.18426 3.27347 3.28761 3.35566 3.65848 3.74271 4.29041 4.47142 4.48203 4.68678 4.87605 4.98405 5.04553 5.15438 5.21823 5.29825 5.35593 5.43858 5.46528 5.54661 5.65418 5.70361 5.75663 5.81299 5.86026 5.87691 5.93037 6.03371 6.04685 6.13076 6.16361 6.25613 6.30417 6.32307 6.37662 6.38889 6.47542 6.70473 6.77034 6.95302 7.03756 7.95379 8.01342 8.35473 8.75655 9.13265 9.84902 10.06059 11.35380 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.003993 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.566478 B = 7010.825326 C = 8555.378912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.148 3.852 6 H 0.088 0.912 7 C -0.162 4.162 8 N -0.704 5.704 9 C 0.531 3.469 10 O -0.554 6.554 11 C -0.142 4.142 12 C -0.062 4.062 13 C -0.082 4.082 14 C -0.090 4.090 15 C -0.097 4.097 16 C -0.135 4.135 17 C 0.062 3.938 18 F -0.133 7.133 19 C 0.066 3.934 20 F -0.128 7.128 21 N -0.740 5.740 22 C -0.231 4.231 23 H 0.088 0.912 24 C 0.008 3.992 25 N -0.931 5.931 26 Si 0.863 3.137 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.395 0.605 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.353 0.647 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 -6.226 -5.440 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.077 0.923 4 C -0.176 4.176 5 C 0.043 3.957 6 H 0.106 0.894 7 C -0.220 4.220 8 N -0.355 5.355 9 C 0.318 3.682 10 O -0.432 6.432 11 C -0.182 4.182 12 C -0.100 4.100 13 C -0.083 4.083 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.153 4.153 17 C 0.042 3.958 18 F -0.112 7.112 19 C 0.046 3.954 20 F -0.106 7.106 21 N -0.383 5.383 22 C -0.362 4.362 23 H 0.106 0.894 24 C -0.188 4.188 25 N -0.579 5.579 26 Si 0.693 3.307 27 H -0.207 1.207 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.231 0.769 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.161 0.839 46 H 0.186 0.814 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.769 -5.409 -5.688 11.769 hybrid contribution -0.162 -2.177 0.262 2.199 sum 8.608 -7.587 -5.427 12.692 Atomic orbital electron populations 1.22411 0.98966 1.00661 1.00491 1.20256 0.91600 0.96084 0.85436 0.92272 1.22268 0.94180 1.01444 0.99674 1.20835 0.92244 0.98026 0.84592 0.89383 1.22209 1.01689 1.00744 0.97402 1.45921 1.19261 1.37128 1.33187 1.20230 0.81150 0.84329 0.82495 1.90629 1.65504 1.26954 1.60143 1.21689 0.97456 0.99572 0.99445 1.20282 0.95068 0.98850 0.95780 1.20013 0.96705 0.94892 0.96703 1.21289 0.98534 1.00315 0.90716 1.21138 0.95600 0.94286 1.00486 1.21063 1.01064 0.99417 0.93794 1.17663 0.95859 0.88929 0.93353 1.91505 1.70480 1.55300 1.93889 1.17558 1.01642 0.98010 0.78231 1.91507 1.93720 1.91563 1.33828 1.42782 1.79736 1.06505 1.09311 1.19059 1.39703 0.92569 0.84831 0.89378 1.24648 1.02454 0.96302 0.95383 1.69686 1.54893 1.33810 0.99514 0.86919 0.77868 0.88416 0.77501 1.20692 1.21741 1.20199 0.93838 0.92397 0.94223 0.90510 0.91992 0.92887 0.91982 0.92495 0.76925 0.87691 0.89630 0.89791 0.88726 0.83423 0.84066 0.83948 0.81422 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.52 37.16 0.35 -2.34 16 2 C 0.18 3.07 2.90 -67.93 -0.20 2.87 16 3 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 4 C -0.14 -1.89 4.44 -26.73 -0.12 -2.01 16 5 C 0.15 2.20 2.65 -67.93 -0.18 2.02 16 6 H 0.09 1.51 7.46 -51.93 -0.39 1.12 16 7 C -0.16 -2.01 9.50 37.16 0.35 -1.66 16 8 N -0.70 -11.56 3.79 -53.80 -0.20 -11.77 16 9 C 0.53 9.62 7.80 -10.98 -0.09 9.53 16 10 O -0.55 -11.43 15.59 5.56 0.09 -11.34 16 11 C -0.14 -2.32 5.68 -27.88 -0.16 -2.48 16 12 C -0.06 -0.96 4.42 -27.89 -0.12 -1.08 16 13 C -0.08 -1.16 5.14 -104.57 -0.54 -1.70 16 14 C -0.09 -1.17 9.68 -39.58 -0.38 -1.55 16 15 C -0.10 -1.06 10.04 -39.59 -0.40 -1.45 16 16 C -0.13 -1.47 10.02 -39.53 -0.40 -1.86 16 17 C 0.06 0.82 7.31 -39.37 -0.29 0.53 16 18 F -0.13 -1.81 17.18 2.25 0.04 -1.77 16 19 C 0.07 0.94 7.25 -39.37 -0.29 0.66 16 20 F -0.13 -1.93 16.48 2.25 0.04 -1.90 16 21 N -0.74 -15.46 3.40 -53.43 -0.18 -15.64 16 22 C -0.23 -5.95 10.42 -15.06 -0.16 -6.11 16 23 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 25 N -0.93 -27.09 13.97 55.49 0.78 -26.32 16 26 Si 0.86 19.80 27.46 -169.99 -4.67 15.14 16 27 H -0.28 -6.02 6.42 56.52 0.36 -5.66 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.05 6.69 56.52 0.38 -5.68 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.40 6.32 6.66 -40.82 -0.27 6.05 16 39 H 0.10 1.91 7.26 -51.93 -0.38 1.53 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 42 H 0.09 1.52 8.04 -51.93 -0.42 1.10 16 43 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 45 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.35 7.12 4.13 -40.82 -0.17 6.95 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -30.39 393.45 -8.01 -38.40 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -7.13 Total: 15.80 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.70 Total: -6.53 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.39 Total: -53.73 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.08 Total: -3.67 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.67 Total: 15.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.39 -8.01 -38.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146822175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.989 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds