Wall clock time and date at job start Tue Mar 31 2020 23:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47023 * 2 1 4 4 C 1.53002 * 109.46755 * 240.00243 * 2 1 3 5 5 C 1.53002 * 109.47115 * 174.02946 * 4 2 1 6 6 H 1.09007 * 109.46921 * 304.09213 * 5 4 2 7 7 C 1.53000 * 109.47325 * 184.09402 * 5 4 2 8 8 N 1.46501 * 109.47372 * 64.08744 * 5 4 2 9 9 C 1.34775 * 120.00088 * 206.46216 * 8 5 4 10 10 O 1.21276 * 120.00155 * 5.14223 * 9 8 5 11 11 C 1.50704 * 119.99725 * 185.13757 * 9 8 5 12 12 C 1.52999 * 109.46858 * 183.96981 * 11 9 8 13 13 C 1.50695 * 109.47191 * 180.02562 * 12 11 9 14 14 C 1.38255 * 120.00200 * 264.72627 * 13 12 11 15 15 C 1.38215 * 120.07159 * 179.76744 * 14 13 12 16 16 C 1.38250 * 120.07048 * 0.50503 * 15 14 13 17 17 C 1.38377 * 120.00189 * 359.75013 * 16 15 14 18 18 F 1.35093 * 120.03414 * 179.97438 * 17 16 15 19 19 C 1.38377 * 120.00191 * 84.99700 * 13 12 11 20 20 F 1.35097 * 120.03094 * 0.02562 * 19 13 12 21 21 N 1.46498 * 109.47466 * 120.00075 * 2 1 3 22 22 C 1.36934 * 119.99894 * 270.57307 * 21 2 1 23 23 H 1.07998 * 120.00175 * 350.65172 * 22 21 2 24 24 C 1.38813 * 119.99751 * 170.66092 * 22 21 2 25 25 N 1.31621 * 120.00008 * 178.45855 * 24 22 21 26 26 Si 1.86798 * 120.00208 * 358.45129 * 24 22 21 27 27 H 1.48498 * 109.46988 * 90.86766 * 26 24 22 28 28 H 1.48501 * 109.47161 * 210.86544 * 26 24 22 29 29 H 1.48499 * 109.47132 * 330.86545 * 26 24 22 30 30 H 1.09000 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47116 * 299.99813 * 1 2 3 32 32 H 1.08997 * 109.47086 * 59.99800 * 1 2 3 33 33 H 1.09000 * 109.47488 * 54.02627 * 4 2 1 34 34 H 1.09006 * 109.47016 * 294.02498 * 4 2 1 35 35 H 1.08999 * 109.46666 * 299.99737 * 7 5 4 36 36 H 1.09003 * 109.47223 * 59.99257 * 7 5 4 37 37 H 1.08993 * 109.47229 * 179.97438 * 7 5 4 38 38 H 0.97003 * 119.99489 * 26.19042 * 8 5 4 39 39 H 1.08992 * 109.47405 * 303.97420 * 11 9 8 40 40 H 1.09001 * 109.46924 * 63.97342 * 11 9 8 41 41 H 1.09004 * 109.47378 * 300.00004 * 12 11 9 42 42 H 1.09001 * 109.47059 * 60.00443 * 12 11 9 43 43 H 1.08003 * 119.96178 * 0.02562 * 14 13 12 44 44 H 1.08003 * 119.96370 * 180.25279 * 15 14 13 45 45 H 1.08000 * 120.00126 * 179.76934 * 16 15 14 46 46 H 0.97003 * 120.00064 * 90.56863 * 21 2 1 47 47 H 0.96995 * 120.00477 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5626 -0.5926 -1.3267 6 1 3.8397 0.4614 -1.3052 7 6 4.0624 -1.2250 -2.6271 8 7 4.1694 -1.2804 -0.1844 9 6 5.3754 -0.8906 0.2739 10 8 5.9163 0.0872 -0.1976 11 6 6.0518 -1.6696 1.3725 12 6 7.3501 -0.9655 1.7719 13 6 8.0269 -1.7447 2.8699 14 6 7.8241 -1.3948 4.1920 15 6 8.4403 -2.1115 5.2005 16 6 9.2690 -3.1734 4.8889 17 6 9.4782 -3.5229 3.5665 18 9 10.2882 -4.5601 3.2612 19 6 8.8557 -2.8071 2.5548 20 9 9.0590 -3.1459 1.2629 21 7 2.0184 -0.6906 1.1961 22 6 2.2355 0.0116 2.3515 23 1 2.1935 1.0908 2.3435 24 6 2.5097 -0.6636 3.5329 25 7 2.7483 0.0121 4.6369 26 14 2.5398 -2.5312 3.5560 27 1 3.9183 -3.0074 3.2762 28 1 2.1100 -3.0167 4.8919 29 1 1.6152 -3.0540 2.5182 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.5919 -0.2729 -2.1361 34 1 1.7665 -1.7752 -1.1974 35 1 3.7853 -2.2789 -2.6486 36 1 3.6108 -0.7132 -3.4770 37 1 5.1470 -1.1329 -2.6824 38 1 3.7015 -2.0139 0.2446 39 1 5.3900 -1.7289 2.2364 40 1 6.2781 -2.6753 1.0183 41 1 8.0121 -0.9062 0.9079 42 1 7.1239 0.0403 2.1260 43 1 7.1803 -0.5630 4.4372 44 1 8.2775 -1.8392 6.2328 45 1 9.7528 -3.7303 5.6776 46 1 2.1880 -1.6453 1.1697 47 1 2.9395 -0.4596 5.4626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146822175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:19 Heat of formation + Delta-G solvation = -117.947177 kcal Electronic energy + Delta-G solvation = -30632.606384 eV Core-core repulsion = 26257.608942 eV Total energy + Delta-G solvation = -4374.997442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.55623 -49.64161 -40.97740 -40.03205 -38.46651 -35.94566 -35.05839 -34.08249 -32.49933 -31.32915 -31.03372 -30.32529 -27.60545 -26.14712 -25.27364 -23.86774 -23.05421 -22.05072 -21.89629 -21.00362 -19.53220 -18.97972 -18.36327 -18.28163 -17.63077 -17.45235 -17.21543 -16.55279 -16.42536 -16.06753 -16.00818 -15.81329 -15.48773 -15.23561 -14.96520 -14.73304 -14.43461 -14.33772 -14.23623 -13.92274 -13.77912 -13.66345 -13.42883 -13.24160 -12.98933 -12.89769 -12.85250 -12.68903 -12.47498 -12.31467 -12.19660 -12.08828 -12.04465 -11.81745 -11.62085 -11.43909 -10.90319 -10.80543 -9.94008 -9.90986 -9.80968 -9.14245 -7.91764 -5.24391 -0.12818 -0.08122 1.36169 1.43609 1.49680 1.75711 2.25452 2.44001 2.52954 2.70915 3.24981 3.39210 3.43571 3.65401 3.68995 3.80758 3.87679 3.89066 4.05366 4.13743 4.17790 4.21861 4.34833 4.47815 4.55037 4.65182 4.66736 4.75660 4.80460 4.85165 4.87926 4.90546 4.94986 5.03145 5.05527 5.08848 5.14516 5.15897 5.31427 5.34994 5.39134 5.59244 5.71696 5.74152 5.89837 6.30655 6.63644 7.17858 7.35833 7.91704 8.13218 9.30422 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.003993 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.566478 B = 7010.825326 C = 8555.378912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 H 0.032 0.968 4 C -0.122 4.122 5 C 0.143 3.857 6 H 0.058 0.942 7 C -0.151 4.151 8 N -0.699 5.699 9 C 0.523 3.477 10 O -0.587 6.587 11 C -0.136 4.136 12 C -0.056 4.056 13 C -0.093 4.093 14 C -0.102 4.102 15 C -0.086 4.086 16 C -0.119 4.119 17 C 0.053 3.947 18 F -0.137 7.137 19 C 0.049 3.951 20 F -0.138 7.138 21 N -0.738 5.738 22 C -0.216 4.216 23 H 0.041 0.959 24 C -0.052 4.052 25 N -0.981 5.981 26 Si 0.926 3.074 27 H -0.257 1.257 28 H -0.307 1.307 29 H -0.252 1.252 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.399 0.601 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.141 0.859 44 H 0.173 0.827 45 H 0.177 0.823 46 H 0.361 0.639 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.988 -8.995 -6.350 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.050 0.950 4 C -0.161 4.161 5 C 0.038 3.962 6 H 0.076 0.924 7 C -0.209 4.209 8 N -0.350 5.350 9 C 0.310 3.690 10 O -0.468 6.468 11 C -0.175 4.175 12 C -0.093 4.093 13 C -0.094 4.094 14 C -0.120 4.120 15 C -0.104 4.104 16 C -0.138 4.138 17 C 0.033 3.967 18 F -0.116 7.116 19 C 0.029 3.971 20 F -0.117 7.117 21 N -0.382 5.382 22 C -0.347 4.347 23 H 0.060 0.940 24 C -0.243 4.243 25 N -0.632 5.632 26 Si 0.754 3.246 27 H -0.182 1.182 28 H -0.235 1.235 29 H -0.177 1.177 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.236 0.764 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.159 0.841 44 H 0.191 0.809 45 H 0.195 0.805 46 H 0.195 0.805 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.388 -8.196 -6.671 13.492 hybrid contribution -0.077 -1.171 0.543 1.293 sum 8.312 -9.367 -6.128 13.942 Atomic orbital electron populations 1.22277 0.97356 1.01379 1.00630 1.20465 0.92691 0.95072 0.85851 0.94967 1.22186 0.92950 1.02325 0.98618 1.20978 0.93201 0.96623 0.85374 0.92367 1.22104 1.00574 1.01873 0.96391 1.45990 1.18673 1.36935 1.33423 1.20580 0.81654 0.84072 0.82688 1.90607 1.66449 1.28378 1.61386 1.21654 0.97310 1.00459 0.98118 1.20129 0.94776 0.98226 0.96196 1.19872 0.97503 0.95321 0.96737 1.21394 0.99053 1.00710 0.90886 1.21484 0.94211 0.93326 1.01378 1.21444 0.99944 0.98852 0.93518 1.17874 0.95932 0.88890 0.93991 1.91495 1.70590 1.55441 1.94028 1.17702 1.02522 0.98653 0.78201 1.91471 1.93893 1.91702 1.34600 1.42685 1.79992 1.06676 1.08867 1.18842 1.38334 0.90821 0.86728 0.94048 1.25329 1.02810 1.01403 0.94770 1.69884 1.56979 1.36015 1.00315 0.85873 0.79480 0.82132 0.77139 1.18190 1.23457 1.17680 0.92713 0.95461 0.90957 0.87112 0.89939 0.91061 0.89627 0.94296 0.76444 0.89317 0.87670 0.90328 0.90424 0.84078 0.80938 0.80535 0.80505 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 9.52 71.98 0.69 -4.10 16 2 C 0.17 5.67 2.90 44.99 0.13 5.80 16 3 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 4 C -0.12 -2.99 4.44 30.60 0.14 -2.85 16 5 C 0.14 4.04 2.65 44.99 0.12 4.16 16 6 H 0.06 2.02 7.46 -2.38 -0.02 2.00 16 7 C -0.15 -3.35 9.50 71.98 0.68 -2.67 16 8 N -0.70 -22.45 3.79 -442.52 -1.68 -24.13 16 9 C 0.52 19.28 7.80 87.66 0.68 19.97 16 10 O -0.59 -25.24 15.59 -3.02 -0.05 -25.29 16 11 C -0.14 -4.50 5.68 29.85 0.17 -4.33 16 12 C -0.06 -1.78 4.42 29.85 0.13 -1.65 16 13 C -0.09 -2.67 5.14 -19.83 -0.10 -2.77 16 14 C -0.10 -2.61 9.68 22.27 0.22 -2.39 16 15 C -0.09 -1.67 10.04 22.27 0.22 -1.44 16 16 C -0.12 -2.24 10.02 22.31 0.22 -2.02 16 17 C 0.05 1.31 7.31 22.41 0.16 1.48 16 18 F -0.14 -3.52 17.18 44.97 0.77 -2.74 16 19 C 0.05 1.39 7.25 22.41 0.16 1.55 16 20 F -0.14 -4.20 16.48 44.97 0.74 -3.46 16 21 N -0.74 -30.46 3.40 -322.95 -1.10 -31.56 16 22 C -0.22 -11.46 10.42 84.03 0.88 -10.59 16 23 H 0.04 2.55 8.05 -2.91 -0.02 2.53 16 24 C -0.05 -2.81 5.50 84.86 0.47 -2.34 16 25 N -0.98 -59.21 13.97 21.65 0.30 -58.91 16 26 Si 0.93 40.53 27.46 68.60 1.88 42.41 16 27 H -0.26 -10.19 6.42 99.48 0.64 -9.55 16 28 H -0.31 -14.29 7.11 99.48 0.71 -13.58 16 29 H -0.25 -9.96 6.69 99.48 0.67 -9.30 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.40 12.02 6.66 -92.71 -0.62 11.40 16 39 H 0.09 3.25 7.26 -2.39 -0.02 3.23 16 40 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.08 2.55 7.70 -2.38 -0.02 2.54 16 42 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 43 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 46 H 0.36 13.81 4.13 -92.71 -0.38 13.42 16 47 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -70.25 393.45 5.73 -64.52 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -0.12 Total: 43.36 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.97 Total: -4.21 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -2.47 Total: -114.60 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 1.51 Total: -6.20 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.88 Total: 42.41 kcal Total: -70.25 5.73 -64.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146822175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.423 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds