Wall clock time and date at job start Tue Mar 31 2020 23:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46774 * 180.02562 * 6 5 4 8 8 N 1.46492 * 109.46855 * 179.97438 * 7 6 5 9 9 C 1.36934 * 120.00299 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00555 * 180.02562 * 9 8 7 12 12 N 1.31614 * 120.00032 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99920 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46802 * 90.00238 * 13 11 9 15 15 H 1.48495 * 109.47229 * 210.00175 * 13 11 9 16 16 H 1.48498 * 109.47060 * 330.00260 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21279 * 120.00041 * 0.02562 * 18 17 2 20 20 C 1.50703 * 119.99935 * 180.02562 * 18 17 2 21 21 C 1.50699 * 109.47042 * 180.02562 * 20 18 17 22 22 C 1.38231 * 119.98523 * 264.72495 * 21 20 18 23 23 C 1.38191 * 120.04743 * 179.73002 * 22 21 20 24 24 C 1.38490 * 120.02570 * 0.54190 * 23 22 21 25 25 F 1.35103 * 120.01324 * 179.75278 * 24 23 22 26 26 C 1.38403 * 119.97571 * 359.73212 * 24 23 22 27 27 C 1.38435 * 119.94900 * 359.97438 * 26 24 23 28 28 F 1.35098 * 120.01537 * 179.97438 * 27 26 24 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 33 33 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 34 34 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 35 35 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 36 36 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 37 37 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 38 38 H 1.09001 * 109.46908 * 300.00434 * 7 6 5 39 39 H 1.08996 * 109.46687 * 59.99974 * 7 6 5 40 40 H 0.96999 * 120.00405 * 0.02562 * 8 7 6 41 41 H 0.97006 * 120.00136 * 180.02562 * 12 11 9 42 42 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 43 43 H 1.08999 * 109.47030 * 300.00189 * 20 18 17 44 44 H 1.08995 * 109.47091 * 59.99897 * 20 18 17 45 45 H 1.07993 * 119.97835 * 359.97438 * 22 21 20 46 46 H 1.07998 * 119.98482 * 180.25473 * 23 22 21 47 47 H 1.07999 * 120.02468 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 6 5.5998 -1.2267 -2.6272 8 7 6.0882 -1.9173 -3.8232 9 6 7.4303 -1.9546 -4.0924 10 1 8.1287 -1.4745 -3.4231 11 6 7.8930 -2.6086 -5.2260 12 7 9.1830 -2.6448 -5.4843 13 14 6.6849 -3.4385 -6.3841 14 1 6.2505 -2.4703 -7.4230 15 1 7.3413 -4.6010 -7.0343 16 1 5.5025 -3.9037 -5.6156 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8581 1.1584 2.4117 20 6 2.6498 -0.7285 3.5875 21 6 2.6997 0.2397 4.7413 22 6 3.8799 0.8922 5.0449 23 6 3.9257 1.7845 6.0991 24 6 2.7920 2.0174 6.8597 25 9 2.8385 2.8861 7.8934 26 6 1.6113 1.3603 6.5601 27 6 1.5650 0.4713 5.5000 28 9 0.4133 -0.1713 5.2067 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9995 -1.0728 -0.4258 36 1 3.7865 -2.3844 -2.5199 37 1 3.6403 -0.8743 -3.4507 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6868 -1.7396 40 1 5.4608 -2.3483 -4.4246 41 1 9.5064 -3.1015 -6.2767 42 1 2.2490 -1.6318 1.1527 43 1 1.9776 -1.5508 3.8325 44 1 3.6490 -1.1203 3.3980 45 1 4.7657 0.7076 4.4554 46 1 4.8472 2.2969 6.3329 47 1 0.7267 1.5417 7.1524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170906021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:30 Heat of formation + Delta-G solvation = -134.203273 kcal Electronic energy + Delta-G solvation = -28258.418681 eV Core-core repulsion = 23882.716322 eV Total energy + Delta-G solvation = -4375.702359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.08929 -50.04469 -41.07562 -39.69036 -38.03955 -36.90713 -34.75654 -33.91473 -33.11374 -31.90048 -31.67890 -29.05160 -28.30277 -25.77167 -24.26511 -23.82823 -23.17880 -22.16394 -21.76353 -21.39226 -19.60839 -19.27563 -18.31905 -18.18931 -17.47627 -16.97148 -16.84662 -16.62826 -16.49504 -16.34095 -16.24981 -15.90363 -15.76585 -15.45446 -14.93868 -14.88367 -14.73699 -14.67954 -14.30228 -14.12769 -13.95769 -13.55556 -13.17481 -12.97796 -12.95306 -12.92676 -12.89589 -12.73681 -12.47050 -12.34891 -12.23628 -12.06268 -11.87063 -11.75420 -11.48624 -11.41286 -10.96353 -10.93848 -10.09236 -10.02935 -9.65824 -9.29871 -8.03220 -5.37190 -0.12855 -0.00545 1.38190 1.42834 1.50398 1.67855 2.11629 2.48952 2.50538 2.82907 3.27949 3.34734 3.49463 3.51100 3.55860 3.86977 3.88616 4.00246 4.07518 4.09653 4.11591 4.35582 4.40398 4.44330 4.53523 4.59681 4.65516 4.76499 4.78720 4.83988 4.89584 4.91193 4.94509 4.99962 5.03257 5.04556 5.15299 5.18839 5.27003 5.32845 5.46469 5.53011 5.63666 5.73066 5.75113 6.21152 6.61483 7.08039 7.31514 7.84722 8.04378 9.18314 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.001798 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.001773 B =15569.213635 C =16812.670637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.117 4.117 7 C 0.149 3.851 8 N -0.761 5.761 9 C -0.240 4.240 10 H 0.053 0.947 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.961 3.039 14 H -0.278 1.278 15 H -0.295 1.295 16 H -0.247 1.247 17 N -0.712 5.712 18 C 0.513 3.487 19 O -0.581 6.581 20 C -0.101 4.101 21 C -0.115 4.115 22 C -0.051 4.051 23 C -0.159 4.159 24 C 0.113 3.887 25 F -0.139 7.139 26 C -0.199 4.199 27 C 0.123 3.877 28 F -0.138 7.138 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.023 0.977 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.416 0.584 43 H 0.124 0.876 44 H 0.144 0.856 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.141 3.707 24.842 32.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.155 4.155 7 C 0.024 3.976 8 N -0.407 5.407 9 C -0.371 4.371 10 H 0.071 0.929 11 C -0.260 4.260 12 N -0.635 5.635 13 Si 0.788 3.212 14 H -0.204 1.204 15 H -0.221 1.221 16 H -0.172 1.172 17 N -0.365 5.365 18 C 0.300 3.700 19 O -0.461 6.461 20 C -0.140 4.140 21 C -0.117 4.117 22 C -0.069 4.069 23 C -0.178 4.178 24 C 0.094 3.906 25 F -0.117 7.117 26 C -0.219 4.219 27 C 0.104 3.896 28 F -0.116 7.116 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.200 0.800 41 H 0.067 0.933 42 H 0.253 0.747 43 H 0.142 0.858 44 H 0.162 0.838 45 H 0.187 0.813 46 H 0.182 0.818 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.189 4.595 24.949 33.054 hybrid contribution -0.262 -0.523 -0.655 0.878 sum -21.452 4.073 24.295 32.665 Atomic orbital electron populations 1.22117 0.94862 1.02756 1.01878 1.20926 0.94083 0.96746 0.84327 0.91684 1.21837 0.94785 1.02045 0.96693 1.21432 0.95667 1.00195 0.97177 1.21673 0.93172 1.01493 0.99132 1.20860 0.94412 0.94403 0.87970 1.42765 1.03465 1.66596 1.27878 1.19070 0.84104 1.28070 1.05882 0.92913 1.25615 0.97706 1.02151 1.00514 1.69900 1.14261 1.49933 1.29428 0.85319 0.79041 0.77926 0.78951 1.20429 1.22139 1.17156 1.46029 1.66687 1.14774 1.08990 1.20888 0.76895 0.86912 0.85280 1.90718 1.51652 1.18038 1.85646 1.20706 1.07062 0.97492 0.88755 1.19662 0.92994 1.01361 0.97672 1.21131 0.97796 0.92674 0.95255 1.21493 0.98677 1.01011 0.96573 1.17486 0.94740 0.91110 0.87277 1.91518 1.97068 1.67080 1.56047 1.21120 0.99842 1.00319 1.00617 1.17292 0.82053 0.94395 0.95861 1.91490 1.47644 1.79651 1.92817 0.94365 0.90775 0.91071 0.89489 0.89706 0.92810 0.91114 0.91073 0.91848 0.96650 0.95873 0.79982 0.93291 0.74711 0.85761 0.83783 0.81348 0.81845 0.82720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 71.98 0.68 -1.64 16 2 C 0.14 2.23 2.57 44.99 0.12 2.35 16 3 H 0.06 1.36 7.58 -2.39 -0.02 1.34 16 4 C -0.12 -1.58 4.75 30.60 0.15 -1.43 16 5 C -0.11 -1.99 5.10 30.60 0.16 -1.84 16 6 C -0.12 -2.93 5.33 30.60 0.16 -2.77 16 7 C 0.15 5.46 6.26 86.38 0.54 6.00 16 8 N -0.76 -35.43 5.41 -343.47 -1.86 -37.28 16 9 C -0.24 -13.88 10.47 84.03 0.88 -13.00 16 10 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 11 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 12 N -0.98 -63.40 13.97 21.65 0.30 -63.09 16 13 Si 0.96 44.94 27.74 68.60 1.90 46.84 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 16 H -0.25 -10.21 6.52 99.48 0.65 -9.57 16 17 N -0.71 -9.41 4.53 -442.53 -2.00 -11.42 16 18 C 0.51 8.96 7.79 87.66 0.68 9.64 16 19 O -0.58 -15.68 15.70 -3.03 -0.05 -15.73 16 20 C -0.10 -1.08 5.60 29.10 0.16 -0.92 16 21 C -0.12 -1.73 4.38 -19.81 -0.09 -1.82 16 22 C -0.05 -0.63 9.68 22.26 0.22 -0.41 16 23 C -0.16 -2.09 10.02 22.32 0.22 -1.86 16 24 C 0.11 1.85 7.30 22.37 0.16 2.02 16 25 F -0.14 -2.44 17.27 44.97 0.78 -1.67 16 26 C -0.20 -3.36 10.01 22.36 0.22 -3.13 16 27 C 0.12 2.21 7.24 22.37 0.16 2.37 16 28 F -0.14 -2.67 16.56 44.97 0.74 -1.92 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.21 7.75 -2.39 -0.02 1.20 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.37 15.97 5.53 -92.71 -0.51 15.46 16 41 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 42 H 0.42 3.08 8.60 -92.71 -0.80 2.29 16 43 H 0.12 0.93 7.79 -2.39 -0.02 0.91 16 44 H 0.14 0.65 8.05 -2.39 -0.02 0.63 16 45 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 46 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 47 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -78.30 400.66 4.33 -73.96 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -0.38 Total: 20.34 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 4.90 Total: -10.04 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -3.56 Total: -111.79 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.05 Total: -15.73 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 1.52 Total: -3.59 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.84 kcal Total: -78.30 4.33 -73.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170906021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.239 kcal (2) G-P(sol) polarization free energy of solvation -78.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds