Wall clock time and date at job start Tue Mar 31 2020 23:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46662 * 2 1 4 4 C 1.53000 * 109.46677 * 120.00048 * 2 1 3 5 5 C 1.53000 * 109.46782 * 185.00043 * 4 2 1 6 6 C 1.53002 * 109.47285 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47285 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47159 * 180.02562 * 7 6 5 9 9 C 1.36938 * 120.00499 * 180.02562 * 8 7 6 10 10 H 1.08010 * 119.99340 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99478 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00343 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47011 * 59.99827 * 13 11 9 15 15 H 1.48503 * 109.47266 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47198 * 299.99494 * 13 11 9 17 17 N 1.46497 * 109.47200 * 239.99980 * 2 1 3 18 18 C 1.34779 * 120.00264 * 85.00100 * 17 2 1 19 19 O 1.21282 * 119.99647 * 359.97438 * 18 17 2 20 20 C 1.50700 * 120.00030 * 180.02562 * 18 17 2 21 21 C 1.50702 * 109.46765 * 180.02562 * 20 18 17 22 22 C 1.38258 * 119.96981 * 89.99710 * 21 20 18 23 23 C 1.38209 * 120.07498 * 180.02562 * 22 21 20 24 24 C 1.38418 * 119.99665 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.03261 * 179.97438 * 24 23 22 26 26 C 1.38644 * 119.92951 * 0.02562 * 24 23 22 27 27 F 1.35104 * 120.03516 * 180.02562 * 26 24 23 28 28 C 1.38218 * 119.95993 * 270.29603 * 21 20 18 29 29 H 1.08997 * 109.47118 * 299.99984 * 1 2 3 30 30 H 1.09002 * 109.46842 * 60.00529 * 1 2 3 31 31 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47182 * 304.99739 * 4 2 1 33 33 H 1.09001 * 109.47214 * 65.00215 * 4 2 1 34 34 H 1.09006 * 109.47209 * 300.00052 * 5 4 2 35 35 H 1.09001 * 109.47105 * 60.00106 * 5 4 2 36 36 H 1.08993 * 109.47059 * 299.99930 * 6 5 4 37 37 H 1.09001 * 109.46834 * 60.00098 * 6 5 4 38 38 H 1.09006 * 109.47209 * 300.00210 * 7 6 5 39 39 H 1.09001 * 109.47105 * 60.00264 * 7 6 5 40 40 H 0.96999 * 120.00231 * 359.97438 * 8 7 6 41 41 H 0.97005 * 119.99546 * 180.02562 * 12 11 9 42 42 H 0.97003 * 120.00197 * 265.00485 * 17 2 1 43 43 H 1.08994 * 109.47684 * 59.99531 * 20 18 17 44 44 H 1.09001 * 109.46747 * 299.99073 * 20 18 17 45 45 H 1.08003 * 119.96145 * 359.97438 * 22 21 20 46 46 H 1.07998 * 120.00096 * 179.97438 * 23 22 21 47 47 H 1.07999 * 120.00437 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3340 2.5633 7 6 5.5996 -1.2266 2.6275 8 7 6.0879 -1.9172 3.8236 9 6 7.4300 -1.9536 4.0934 10 1 8.1285 -1.4735 3.4240 11 6 7.8928 -2.6084 5.2264 12 7 7.0415 -3.1939 6.0419 13 14 9.7235 -2.6586 5.5940 14 1 10.2361 -1.2731 5.7458 15 1 9.9553 -3.4123 6.8524 16 1 10.4345 -3.3298 4.4764 17 7 2.0184 -0.6906 -1.1961 18 6 2.1472 -0.0183 -2.3571 19 8 1.8583 1.1584 -2.4117 20 6 2.6490 -0.7289 -3.5877 21 6 2.7004 0.2397 -4.7411 22 6 3.8491 0.9720 -4.9774 23 6 3.8985 1.8612 -6.0342 24 6 2.7972 2.0191 -6.8579 25 9 2.8445 2.8885 -7.8908 26 6 1.6453 1.2847 -6.6210 27 9 0.5694 1.4367 -7.4238 28 6 1.5970 0.3995 -5.5580 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7516 -1.7716 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3574 36 1 3.6401 -0.8741 3.4508 37 1 3.7864 -2.3843 2.5201 38 1 6.0340 -1.6868 1.7399 39 1 5.8884 -0.1764 2.6705 40 1 5.4606 -2.3481 4.4250 41 1 7.3648 -3.6512 6.8339 42 1 2.2491 -1.6318 -1.1526 43 1 1.9762 -1.5507 -3.8326 44 1 3.6482 -1.1213 -3.3985 45 1 4.7085 0.8495 -4.3348 46 1 4.7962 2.4329 -6.2174 47 1 0.6987 -0.1698 -5.3698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174948044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:44 Heat of formation + Delta-G solvation = -116.599385 kcal Electronic energy + Delta-G solvation = -27950.913930 eV Core-core repulsion = 23575.974933 eV Total energy + Delta-G solvation = -4374.938998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.81049 -48.88769 -40.50011 -39.13252 -37.01828 -35.29421 -33.40946 -33.05724 -31.55103 -31.20354 -30.31204 -27.80023 -27.48280 -24.29616 -23.72076 -22.96008 -22.08062 -21.02197 -20.76460 -20.65188 -18.33411 -17.61917 -17.47940 -17.39114 -17.02016 -16.62913 -16.41666 -15.55429 -15.29889 -15.18804 -14.88714 -14.74761 -14.61206 -14.39908 -14.17845 -14.03967 -13.64851 -13.46061 -13.18770 -13.00044 -12.98445 -12.58802 -12.38440 -12.31994 -12.21844 -11.80891 -11.69459 -11.50017 -11.29990 -11.02937 -10.81374 -10.74430 -10.46479 -10.34525 -10.17042 -10.02682 -9.68227 -9.49246 -9.30468 -9.03658 -8.86908 -6.92011 -5.76790 -3.05346 0.45878 0.58198 2.34856 2.70713 3.12269 3.38062 3.43425 3.47536 3.48815 3.89330 4.02107 4.13405 4.41425 4.52398 4.56739 4.61662 4.65196 4.80543 4.86281 4.93538 4.98322 5.20932 5.28685 5.35878 5.36884 5.40670 5.45441 5.52349 5.57347 5.58145 5.65356 5.74806 5.85258 5.86826 5.91180 6.05858 6.17541 6.26855 6.31193 6.32935 6.35986 6.43191 6.86710 6.90769 7.21911 7.68779 7.94650 8.42610 9.53211 10.12394 10.46792 11.46152 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.001686 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.761798 B =16603.374760 C =18072.166127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.722 5.722 18 C 0.514 3.486 19 O -0.533 6.533 20 C -0.106 4.106 21 C -0.045 4.045 22 C -0.084 4.084 23 C -0.123 4.123 24 C 0.065 3.935 25 F -0.130 7.130 26 C 0.068 3.932 27 F -0.130 7.130 28 C -0.112 4.112 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.402 0.598 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.581 5.419 -24.946 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.374 5.374 18 C 0.300 3.700 19 O -0.409 6.409 20 C -0.146 4.146 21 C -0.046 4.046 22 C -0.102 4.102 23 C -0.141 4.141 24 C 0.045 3.955 25 F -0.109 7.109 26 C 0.048 3.952 27 F -0.108 7.108 28 C -0.131 4.131 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.236 0.764 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.159 0.841 46 H 0.165 0.835 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.658 6.344 -25.047 29.706 hybrid contribution 0.710 -0.471 0.185 0.872 sum -13.948 5.873 -24.863 29.106 Atomic orbital electron populations 1.22175 0.95395 1.02064 1.02507 1.21053 0.93721 0.97736 0.83826 0.89333 1.21943 0.96895 1.00943 0.96733 1.21516 0.93922 1.01085 0.98622 1.21730 0.97265 1.00270 0.97124 1.20644 0.90987 0.95307 0.90562 1.42378 1.05320 1.65000 1.25185 1.19206 0.83922 1.28498 1.05508 0.91290 1.24753 0.97748 1.00938 0.97706 1.69657 1.32861 1.40700 1.15118 0.86249 0.85077 0.77484 0.77274 1.21271 1.21663 1.21277 1.46116 1.67416 1.14197 1.09666 1.20399 0.77855 0.87418 0.84320 1.90750 1.49426 1.15825 1.84886 1.20722 1.05054 0.97836 0.90975 1.19165 0.93108 0.97229 0.95111 1.20988 0.98365 0.94449 0.96399 1.21074 0.97728 1.00188 0.95137 1.17716 0.95020 0.93355 0.89388 1.91530 1.96802 1.66814 1.55720 1.17599 0.83855 1.00475 0.93293 1.91533 1.52856 1.94707 1.71735 1.20890 0.99881 0.98581 0.93703 0.91507 0.92329 0.92478 0.90211 0.91311 0.92136 0.92016 0.92058 0.92125 0.96667 0.96614 0.78349 0.93490 0.76386 0.87335 0.86919 0.84061 0.83474 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.02 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 4 C -0.13 -1.11 4.75 -26.73 -0.13 -1.23 16 5 C -0.11 -1.27 5.10 -26.73 -0.14 -1.40 16 6 C -0.13 -1.90 5.33 -26.73 -0.14 -2.04 16 7 C 0.15 3.03 6.26 -4.05 -0.03 3.01 16 8 N -0.73 -18.82 5.60 -59.91 -0.34 -19.15 16 9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 10 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 13 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 N -0.72 -5.16 4.53 -53.80 -0.24 -5.40 16 18 C 0.51 4.35 7.79 -10.98 -0.09 4.27 16 19 O -0.53 -6.78 15.70 5.56 0.09 -6.70 16 20 C -0.11 -0.54 5.83 -29.03 -0.17 -0.71 16 21 C -0.05 -0.32 4.37 -104.62 -0.46 -0.78 16 22 C -0.08 -0.58 9.70 -39.58 -0.38 -0.96 16 23 C -0.12 -0.91 10.02 -39.53 -0.40 -1.31 16 24 C 0.07 0.61 7.31 -39.37 -0.29 0.33 16 25 F -0.13 -1.36 17.18 2.25 0.04 -1.32 16 26 C 0.07 0.65 7.31 -39.37 -0.29 0.36 16 27 F -0.13 -1.37 17.18 2.25 0.04 -1.33 16 28 C -0.11 -0.87 9.68 -39.52 -0.38 -1.26 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.40 1.96 8.60 -40.82 -0.35 1.61 16 43 H 0.11 0.30 8.09 -51.93 -0.42 -0.12 16 44 H 0.11 0.36 8.08 -51.93 -0.42 -0.06 16 45 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 46 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 47 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 404.63 15.07 6.10 6.10 Total: -1.00 -34.60 404.63 -8.91 -43.51 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.34 Total: 3.68 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.95 Total: -9.15 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.15 Total: -52.17 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: 0.09 Total: -6.70 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.60 -8.91 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174948044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.090 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds