Wall clock time and date at job start Tue Mar 31 2020 23:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46662 * 2 1 4 4 C 1.53000 * 109.46677 * 120.00048 * 2 1 3 5 5 C 1.53000 * 109.46782 * 185.00043 * 4 2 1 6 6 C 1.53002 * 109.47285 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47285 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47159 * 180.02562 * 7 6 5 9 9 C 1.36938 * 120.00499 * 180.02562 * 8 7 6 10 10 H 1.08010 * 119.99340 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99478 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00343 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47011 * 59.99827 * 13 11 9 15 15 H 1.48503 * 109.47266 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47198 * 299.99494 * 13 11 9 17 17 N 1.46497 * 109.47200 * 239.99980 * 2 1 3 18 18 C 1.34779 * 120.00264 * 85.00100 * 17 2 1 19 19 O 1.21282 * 119.99647 * 359.97438 * 18 17 2 20 20 C 1.50700 * 120.00030 * 180.02562 * 18 17 2 21 21 C 1.50702 * 109.46765 * 180.02562 * 20 18 17 22 22 C 1.38258 * 119.96981 * 89.99710 * 21 20 18 23 23 C 1.38209 * 120.07498 * 180.02562 * 22 21 20 24 24 C 1.38418 * 119.99665 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.03261 * 179.97438 * 24 23 22 26 26 C 1.38644 * 119.92951 * 0.02562 * 24 23 22 27 27 F 1.35104 * 120.03516 * 180.02562 * 26 24 23 28 28 C 1.38218 * 119.95993 * 270.29603 * 21 20 18 29 29 H 1.08997 * 109.47118 * 299.99984 * 1 2 3 30 30 H 1.09002 * 109.46842 * 60.00529 * 1 2 3 31 31 H 1.08998 * 109.47076 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47182 * 304.99739 * 4 2 1 33 33 H 1.09001 * 109.47214 * 65.00215 * 4 2 1 34 34 H 1.09006 * 109.47209 * 300.00052 * 5 4 2 35 35 H 1.09001 * 109.47105 * 60.00106 * 5 4 2 36 36 H 1.08993 * 109.47059 * 299.99930 * 6 5 4 37 37 H 1.09001 * 109.46834 * 60.00098 * 6 5 4 38 38 H 1.09006 * 109.47209 * 300.00210 * 7 6 5 39 39 H 1.09001 * 109.47105 * 60.00264 * 7 6 5 40 40 H 0.96999 * 120.00231 * 359.97438 * 8 7 6 41 41 H 0.97005 * 119.99546 * 180.02562 * 12 11 9 42 42 H 0.97003 * 120.00197 * 265.00485 * 17 2 1 43 43 H 1.08994 * 109.47684 * 59.99531 * 20 18 17 44 44 H 1.09001 * 109.46747 * 299.99073 * 20 18 17 45 45 H 1.08003 * 119.96145 * 359.97438 * 22 21 20 46 46 H 1.07998 * 120.00096 * 179.97438 * 23 22 21 47 47 H 1.07999 * 120.00437 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3340 2.5633 7 6 5.5996 -1.2266 2.6275 8 7 6.0879 -1.9172 3.8236 9 6 7.4300 -1.9536 4.0934 10 1 8.1285 -1.4735 3.4240 11 6 7.8928 -2.6084 5.2264 12 7 7.0415 -3.1939 6.0419 13 14 9.7235 -2.6586 5.5940 14 1 10.2361 -1.2731 5.7458 15 1 9.9553 -3.4123 6.8524 16 1 10.4345 -3.3298 4.4764 17 7 2.0184 -0.6906 -1.1961 18 6 2.1472 -0.0183 -2.3571 19 8 1.8583 1.1584 -2.4117 20 6 2.6490 -0.7289 -3.5877 21 6 2.7004 0.2397 -4.7411 22 6 3.8491 0.9720 -4.9774 23 6 3.8985 1.8612 -6.0342 24 6 2.7972 2.0191 -6.8579 25 9 2.8445 2.8885 -7.8908 26 6 1.6453 1.2847 -6.6210 27 9 0.5694 1.4367 -7.4238 28 6 1.5970 0.3995 -5.5580 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7516 -1.7716 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3574 36 1 3.6401 -0.8741 3.4508 37 1 3.7864 -2.3843 2.5201 38 1 6.0340 -1.6868 1.7399 39 1 5.8884 -0.1764 2.6705 40 1 5.4606 -2.3481 4.4250 41 1 7.3648 -3.6512 6.8339 42 1 2.2491 -1.6318 -1.1526 43 1 1.9762 -1.5507 -3.8326 44 1 3.6482 -1.1213 -3.3985 45 1 4.7085 0.8495 -4.3348 46 1 4.7962 2.4329 -6.2174 47 1 0.6987 -0.1698 -5.3698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174948044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:43 Heat of formation + Delta-G solvation = -137.337222 kcal Electronic energy + Delta-G solvation = -27951.813190 eV Core-core repulsion = 23575.974933 eV Total energy + Delta-G solvation = -4375.838258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.54041 -49.62771 -41.12507 -39.74115 -37.95509 -36.76830 -34.72776 -33.78745 -32.81087 -31.84517 -31.51913 -28.79485 -28.33851 -25.90500 -24.32279 -23.93122 -23.21562 -22.01755 -21.75056 -21.33624 -19.10742 -19.00523 -18.24675 -18.08909 -18.02506 -17.35389 -17.11976 -16.66656 -16.24945 -16.14170 -16.05805 -15.56501 -15.39473 -15.29985 -15.24320 -15.02131 -14.77460 -14.56007 -14.23976 -14.09085 -13.94170 -13.27933 -13.13606 -12.92640 -12.91534 -12.84722 -12.81659 -12.70384 -12.41152 -12.27523 -12.21383 -12.17791 -11.85545 -11.76908 -11.44702 -11.35388 -10.91096 -10.87052 -10.07781 -9.98049 -9.66637 -8.99458 -7.95029 -5.24074 -0.15848 0.00628 1.47926 1.51145 1.57389 1.74306 2.12703 2.56212 2.56785 2.77544 3.26875 3.38276 3.47011 3.61968 3.64433 3.98427 4.02798 4.09491 4.10427 4.12150 4.20028 4.39073 4.42193 4.47451 4.62227 4.64376 4.68526 4.75539 4.82147 4.86294 4.90360 4.92632 4.97948 5.02692 5.03139 5.06794 5.18328 5.30709 5.33346 5.36104 5.48002 5.49746 5.56973 5.67261 5.72835 6.27823 6.67678 7.33537 7.37771 8.11152 8.33702 9.28271 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.001686 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.761798 B =16603.374760 C =18072.166127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.065 0.935 4 C -0.117 4.117 5 C -0.103 4.103 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.250 4.250 10 H 0.074 0.926 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.279 1.279 15 H -0.294 1.294 16 H -0.276 1.276 17 N -0.712 5.712 18 C 0.512 3.488 19 O -0.582 6.582 20 C -0.099 4.099 21 C -0.048 4.048 22 C -0.085 4.085 23 C -0.123 4.123 24 C 0.042 3.958 25 F -0.143 7.143 26 C 0.044 3.956 27 F -0.143 7.143 28 C -0.114 4.114 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.011 0.989 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.416 0.584 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.164 0.836 46 H 0.166 0.834 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.980 4.287 -25.237 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.155 4.155 5 C -0.141 4.141 6 C -0.151 4.151 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.092 0.908 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.205 1.205 15 H -0.220 1.220 16 H -0.202 1.202 17 N -0.365 5.365 18 C 0.300 3.700 19 O -0.461 6.461 20 C -0.138 4.138 21 C -0.049 4.049 22 C -0.103 4.103 23 C -0.141 4.141 24 C 0.022 3.978 25 F -0.122 7.122 26 C 0.024 3.976 27 F -0.122 7.122 28 C -0.133 4.133 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.029 0.971 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.253 0.747 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.181 0.819 46 H 0.183 0.817 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.056 5.200 -25.373 29.469 hybrid contribution 0.514 -0.095 0.277 0.591 sum -13.542 5.105 -25.096 28.970 Atomic orbital electron populations 1.22114 0.94778 1.02777 1.01924 1.20878 0.94116 0.96660 0.84288 0.91691 1.21836 0.94828 1.01987 0.96836 1.21418 0.95669 1.00044 0.97008 1.21610 0.93731 1.00984 0.98804 1.20872 0.94254 0.94199 0.88517 1.42636 1.04474 1.65416 1.26702 1.19631 0.85392 1.27722 1.05456 0.90779 1.25608 1.02218 1.01251 0.97864 1.69814 1.34733 1.41887 1.15547 0.85185 0.79878 0.77604 0.76941 1.20502 1.22033 1.20163 1.46041 1.66696 1.14819 1.08966 1.20953 0.76919 0.86892 0.85253 1.90742 1.51661 1.18078 1.85657 1.20807 1.07234 0.97540 0.88257 1.19477 0.92729 0.97345 0.95331 1.21348 0.99138 0.93695 0.96131 1.21342 0.97705 1.00304 0.94766 1.18036 0.95948 0.93911 0.89911 1.91487 1.96921 1.67343 1.56421 1.17916 0.83768 1.01713 0.94160 1.91489 1.53474 1.94937 1.72265 1.21134 1.00858 0.98186 0.93126 0.91144 0.93921 0.91043 0.90186 0.89662 0.90868 0.92838 0.92838 0.91801 0.96059 0.97054 0.79474 0.93960 0.74665 0.84372 0.84151 0.81870 0.81666 0.82341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 71.98 0.68 -1.54 16 2 C 0.15 2.20 2.57 44.99 0.12 2.31 16 3 H 0.06 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.12 -1.73 4.75 30.59 0.15 -1.59 16 5 C -0.10 -2.07 5.10 30.59 0.16 -1.91 16 6 C -0.11 -3.22 5.33 30.59 0.16 -3.06 16 7 C 0.15 5.71 6.26 86.38 0.54 6.25 16 8 N -0.75 -38.17 5.60 -343.45 -1.92 -40.09 16 9 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 10 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 11 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 12 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 13 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 N -0.71 -8.19 4.53 -442.53 -2.00 -10.19 16 18 C 0.51 7.48 7.79 87.66 0.68 8.16 16 19 O -0.58 -14.30 15.70 -3.03 -0.05 -14.35 16 20 C -0.10 -0.67 5.83 29.10 0.17 -0.50 16 21 C -0.05 -0.59 4.37 -19.86 -0.09 -0.67 16 22 C -0.09 -1.02 9.70 22.27 0.22 -0.80 16 23 C -0.12 -1.73 10.02 22.31 0.22 -1.50 16 24 C 0.04 0.81 7.31 22.41 0.16 0.97 16 25 F -0.14 -3.14 17.18 44.97 0.77 -2.37 16 26 C 0.04 0.86 7.31 22.41 0.16 1.03 16 27 F -0.14 -3.17 17.18 44.97 0.77 -2.40 16 28 C -0.11 -1.69 9.68 22.31 0.22 -1.47 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.29 7.75 -2.38 -0.02 1.27 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.37 20.08 7.67 -92.71 -0.71 19.37 16 41 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 42 H 0.42 2.42 8.60 -92.71 -0.80 1.63 16 43 H 0.14 0.16 8.09 -2.39 -0.02 0.14 16 44 H 0.14 0.23 8.08 -2.39 -0.02 0.22 16 45 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 47 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -76.09 404.63 4.22 -71.87 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.52 Total: 20.06 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.86 Total: -11.50 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.65 Total: -109.07 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.05 Total: -14.35 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.55 Total: -4.76 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -76.09 4.22 -71.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174948044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.463 kcal (2) G-P(sol) polarization free energy of solvation -76.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds