Wall clock time and date at job start Tue Mar 31 2020 23:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 C 1.52998 * 109.47160 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47446 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47261 * 180.02562 * 7 6 5 9 9 C 1.36937 * 119.99584 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00256 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99745 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00213 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99771 * 359.97438 * 11 9 8 14 14 H 1.48510 * 109.46858 * 90.00293 * 13 11 9 15 15 H 1.48496 * 109.47201 * 209.99794 * 13 11 9 16 16 H 1.48495 * 109.47312 * 330.00405 * 13 11 9 17 17 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 18 18 C 1.34777 * 119.99525 * 84.99977 * 17 2 1 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 2 21 21 C 1.50703 * 109.47148 * 180.28037 * 20 18 17 22 22 C 1.38421 * 120.02275 * 269.72434 * 21 20 18 23 23 F 1.35101 * 120.01013 * 359.97438 * 22 21 20 24 24 C 1.38473 * 119.97492 * 179.79442 * 22 21 20 25 25 C 1.38208 * 120.02296 * 0.47825 * 24 22 21 26 26 C 1.38207 * 120.05154 * 359.74958 * 25 24 22 27 27 C 1.38414 * 120.02632 * 89.99807 * 21 20 18 28 28 F 1.35099 * 120.01402 * 0.02562 * 27 21 20 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 35 35 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 36 36 H 1.09000 * 109.47070 * 300.00153 * 6 5 4 37 37 H 1.09006 * 109.46982 * 59.99957 * 6 5 4 38 38 H 1.09000 * 109.47031 * 300.00080 * 7 6 5 39 39 H 1.09006 * 109.47145 * 59.99959 * 7 6 5 40 40 H 0.97001 * 119.99746 * 359.97438 * 8 7 6 41 41 H 0.96992 * 119.99776 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00580 * 265.00723 * 17 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 44 44 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 45 45 H 1.08004 * 119.98884 * 180.23302 * 24 22 21 46 46 H 1.07999 * 119.97196 * 179.77423 * 25 24 22 47 47 H 1.07997 * 119.98858 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3348 2.5628 7 6 5.5995 -1.2264 2.6277 8 7 6.0879 -1.9179 3.8234 9 6 7.4299 -1.9535 4.0935 10 1 8.1282 -1.4715 3.4254 11 6 7.8927 -2.6083 5.2267 12 7 9.1825 -2.6421 5.4866 13 14 6.6846 -3.4402 6.3834 14 1 6.4800 -4.8479 5.9568 15 1 7.2261 -3.4157 7.7659 16 1 5.3873 -2.7185 6.3470 17 7 2.0185 -0.6908 -1.1960 18 6 2.1472 -0.0185 -2.3570 19 8 1.8591 1.1584 -2.4116 20 6 2.6554 -0.7275 -3.5859 21 6 2.7114 0.2421 -4.7382 22 6 1.6149 0.3941 -5.5693 23 9 0.4941 -0.3270 -5.3480 24 6 1.6659 1.2884 -6.6253 25 6 2.8145 2.0218 -6.8555 26 6 3.9116 1.8673 -6.0293 27 6 3.8612 0.9770 -4.9698 28 9 4.9342 0.8251 -4.1631 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.9995 -1.0728 0.4262 35 1 3.8531 0.4371 1.3574 36 1 3.6402 -0.8756 3.4507 37 1 3.7864 -2.3851 2.5188 38 1 6.0345 -1.6853 1.7398 39 1 5.8876 -0.1760 2.6719 40 1 5.4606 -2.3499 4.4240 41 1 9.5058 -3.1000 6.2782 42 1 2.2491 -1.6319 -1.1524 43 1 3.6539 -1.1197 -3.3923 44 1 1.9842 -1.5494 -3.8349 45 1 0.8092 1.4100 -7.2716 46 1 2.8547 2.7163 -7.6816 47 1 4.8088 2.4405 -6.2104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174961757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:49 Heat of formation + Delta-G solvation = -111.017067 kcal Electronic energy + Delta-G solvation = -28697.533911 eV Core-core repulsion = 24322.836981 eV Total energy + Delta-G solvation = -4374.696930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.41442 -49.33872 -40.28373 -39.05953 -37.07722 -35.43345 -33.56525 -33.23739 -31.61193 -30.71178 -30.61406 -28.04816 -27.76840 -24.29857 -23.30371 -23.09485 -21.85673 -20.99247 -20.87354 -20.66457 -18.55964 -17.78649 -17.60940 -17.45232 -16.77943 -16.26013 -16.02566 -15.97429 -15.63150 -15.36224 -15.10516 -14.80399 -14.62687 -14.22848 -14.18699 -13.88528 -13.54541 -13.47943 -13.17821 -13.04505 -12.83802 -12.63280 -12.46361 -12.35429 -12.05665 -11.91982 -11.79048 -11.65148 -11.45288 -11.17039 -10.87175 -10.84673 -10.41365 -10.33922 -10.18253 -10.09025 -9.57188 -9.31645 -9.28608 -9.16118 -8.87185 -7.20432 -5.74829 -3.09988 0.51147 0.55979 2.38930 2.76130 3.09371 3.38195 3.40841 3.45796 3.47097 3.92431 3.97941 4.18666 4.35239 4.42020 4.60641 4.62135 4.70295 4.83055 4.90854 4.92182 4.96921 5.18947 5.31374 5.32281 5.36463 5.42882 5.49136 5.49593 5.55972 5.57767 5.58599 5.66462 5.71165 5.82146 5.86901 6.02915 6.07708 6.14660 6.18957 6.31625 6.32886 6.37239 6.79164 6.82879 7.24101 7.97454 8.02360 8.44561 9.24007 9.96463 10.16850 11.43760 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.001989 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.892564 B =14071.590416 C =15351.171699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.721 5.721 18 C 0.519 3.481 19 O -0.534 6.534 20 C -0.106 4.106 21 C -0.137 4.137 22 C 0.141 3.859 23 F -0.130 7.130 24 C -0.165 4.165 25 C -0.062 4.062 26 C -0.163 4.163 27 C 0.144 3.856 28 F -0.125 7.125 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.402 0.598 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.602 6.442 -27.127 34.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.584 5.584 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.373 5.373 18 C 0.305 3.695 19 O -0.410 6.410 20 C -0.146 4.146 21 C -0.139 4.139 22 C 0.121 3.879 23 F -0.108 7.108 24 C -0.184 4.184 25 C -0.080 4.080 26 C -0.182 4.182 27 C 0.124 3.876 28 F -0.104 7.104 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.236 0.764 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.563 7.306 -27.122 34.811 hybrid contribution -0.606 -1.288 1.191 1.856 sum -21.169 6.018 -25.931 34.011 Atomic orbital electron populations 1.22173 0.95363 1.02075 1.02502 1.21049 0.93747 0.97761 0.83762 0.89306 1.21942 0.96839 1.00926 0.96769 1.21515 0.93973 1.01256 0.98518 1.21777 0.97298 1.00257 0.97393 1.20631 0.90765 0.95702 0.90006 1.42743 1.05249 1.66239 1.26142 1.19091 0.82281 1.29148 1.06803 0.89269 1.24699 0.95652 1.00813 0.98268 1.69706 1.11716 1.48287 1.28642 0.86510 0.80934 0.79782 0.81090 1.21099 1.21720 1.20375 1.46061 1.67504 1.14172 1.09571 1.20294 0.77611 0.87339 0.84251 1.90720 1.49643 1.15759 1.84864 1.20538 1.05296 0.97874 0.90897 1.19247 0.93521 1.02159 0.98963 1.17140 0.82188 0.92929 0.95636 1.91518 1.49258 1.75732 1.94295 1.21178 1.00580 0.98012 0.98592 1.20858 0.91163 0.97522 0.98417 1.21224 1.01254 1.00118 0.95608 1.17180 0.83463 0.96640 0.90300 1.91557 1.52935 1.94265 1.71610 0.92280 0.92477 0.91521 0.90221 0.91334 0.91919 0.91787 0.92120 0.92170 0.95725 0.95735 0.80747 0.93093 0.76399 0.86786 0.87072 0.83962 0.83826 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.06 16 2 C 0.14 1.34 2.57 -67.93 -0.17 1.17 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C -0.13 -1.16 4.75 -26.73 -0.13 -1.29 16 5 C -0.11 -1.34 5.10 -26.73 -0.14 -1.47 16 6 C -0.13 -1.91 5.33 -26.74 -0.14 -2.05 16 7 C 0.16 3.09 6.26 -4.04 -0.03 3.06 16 8 N -0.76 -18.65 5.41 -59.91 -0.32 -18.97 16 9 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 10 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 11 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 12 N -0.94 -29.93 13.97 55.49 0.78 -29.15 16 13 Si 0.89 22.46 27.74 -169.99 -4.71 17.75 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.28 -6.61 6.52 56.52 0.37 -6.25 16 17 N -0.72 -6.42 4.53 -53.80 -0.24 -6.66 16 18 C 0.52 5.66 7.79 -10.98 -0.09 5.57 16 19 O -0.53 -7.86 15.70 5.55 0.09 -7.78 16 20 C -0.11 -0.89 5.48 -29.03 -0.16 -1.05 16 21 C -0.14 -1.31 4.38 -104.49 -0.46 -1.77 16 22 C 0.14 1.26 7.24 -39.43 -0.29 0.98 16 23 F -0.13 -1.23 16.47 2.25 0.04 -1.20 16 24 C -0.16 -1.12 10.03 -39.51 -0.40 -1.51 16 25 C -0.06 -0.35 10.04 -39.60 -0.40 -0.75 16 26 C -0.16 -1.19 10.03 -39.50 -0.40 -1.58 16 27 C 0.14 1.39 7.24 -39.43 -0.29 1.10 16 28 F -0.13 -1.38 16.48 2.25 0.04 -1.34 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 41 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 42 H 0.40 2.63 8.60 -40.82 -0.35 2.28 16 43 H 0.11 0.81 7.64 -51.92 -0.40 0.41 16 44 H 0.11 0.70 7.63 -51.93 -0.40 0.30 16 45 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 47 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -35.93 399.42 -8.55 -44.48 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.25 Total: 4.86 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.97 Total: -7.99 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.21 Total: -54.79 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.07 Total: -2.54 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.93 -8.55 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174961757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.541 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds