Wall clock time and date at job start Tue Mar 31 2020 23:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 C 1.52998 * 109.47160 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47446 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47261 * 180.02562 * 7 6 5 9 9 C 1.36937 * 119.99584 * 180.02562 * 8 7 6 10 10 H 1.07994 * 120.00256 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99745 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00213 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99771 * 359.97438 * 11 9 8 14 14 H 1.48510 * 109.46858 * 90.00293 * 13 11 9 15 15 H 1.48496 * 109.47201 * 209.99794 * 13 11 9 16 16 H 1.48495 * 109.47312 * 330.00405 * 13 11 9 17 17 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 18 18 C 1.34777 * 119.99525 * 84.99977 * 17 2 1 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 2 21 21 C 1.50703 * 109.47148 * 180.28037 * 20 18 17 22 22 C 1.38421 * 120.02275 * 269.72434 * 21 20 18 23 23 F 1.35101 * 120.01013 * 359.97438 * 22 21 20 24 24 C 1.38473 * 119.97492 * 179.79442 * 22 21 20 25 25 C 1.38208 * 120.02296 * 0.47825 * 24 22 21 26 26 C 1.38207 * 120.05154 * 359.74958 * 25 24 22 27 27 C 1.38414 * 120.02632 * 89.99807 * 21 20 18 28 28 F 1.35099 * 120.01402 * 0.02562 * 27 21 20 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 35 35 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 36 36 H 1.09000 * 109.47070 * 300.00153 * 6 5 4 37 37 H 1.09006 * 109.46982 * 59.99957 * 6 5 4 38 38 H 1.09000 * 109.47031 * 300.00080 * 7 6 5 39 39 H 1.09006 * 109.47145 * 59.99959 * 7 6 5 40 40 H 0.97001 * 119.99746 * 359.97438 * 8 7 6 41 41 H 0.96992 * 119.99776 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00580 * 265.00723 * 17 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 44 44 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 45 45 H 1.08004 * 119.98884 * 180.23302 * 24 22 21 46 46 H 1.07999 * 119.97196 * 179.77423 * 25 24 22 47 47 H 1.07997 * 119.98858 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3348 2.5628 7 6 5.5995 -1.2264 2.6277 8 7 6.0879 -1.9179 3.8234 9 6 7.4299 -1.9535 4.0935 10 1 8.1282 -1.4715 3.4254 11 6 7.8927 -2.6083 5.2267 12 7 9.1825 -2.6421 5.4866 13 14 6.6846 -3.4402 6.3834 14 1 6.4800 -4.8479 5.9568 15 1 7.2261 -3.4157 7.7659 16 1 5.3873 -2.7185 6.3470 17 7 2.0185 -0.6908 -1.1960 18 6 2.1472 -0.0185 -2.3570 19 8 1.8591 1.1584 -2.4116 20 6 2.6554 -0.7275 -3.5859 21 6 2.7114 0.2421 -4.7382 22 6 1.6149 0.3941 -5.5693 23 9 0.4941 -0.3270 -5.3480 24 6 1.6659 1.2884 -6.6253 25 6 2.8145 2.0218 -6.8555 26 6 3.9116 1.8673 -6.0293 27 6 3.8612 0.9770 -4.9698 28 9 4.9342 0.8251 -4.1631 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8898 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.9995 -1.0728 0.4262 35 1 3.8531 0.4371 1.3574 36 1 3.6402 -0.8756 3.4507 37 1 3.7864 -2.3851 2.5188 38 1 6.0345 -1.6853 1.7398 39 1 5.8876 -0.1760 2.6719 40 1 5.4606 -2.3499 4.4240 41 1 9.5058 -3.1000 6.2782 42 1 2.2491 -1.6319 -1.1524 43 1 3.6539 -1.1197 -3.3923 44 1 1.9842 -1.5494 -3.8349 45 1 0.8092 1.4100 -7.2716 46 1 2.8547 2.7163 -7.6816 47 1 4.8088 2.4405 -6.2104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174961757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:48 Heat of formation + Delta-G solvation = -133.640362 kcal Electronic energy + Delta-G solvation = -28698.514930 eV Core-core repulsion = 24322.836981 eV Total energy + Delta-G solvation = -4375.677950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.07735 -50.07043 -41.08414 -39.66193 -38.10680 -36.96000 -34.80417 -34.17897 -33.18953 -31.86370 -31.27736 -29.09949 -28.66290 -25.81276 -23.97556 -23.90316 -23.27635 -22.21040 -21.81783 -21.48153 -19.63573 -19.19495 -18.43316 -18.34240 -17.51945 -16.93660 -16.70732 -16.65118 -16.62632 -16.35278 -16.30585 -16.05187 -15.81976 -15.48016 -14.99792 -14.91541 -14.72183 -14.49262 -14.30696 -14.17948 -13.79265 -13.69408 -13.32440 -13.12406 -12.98308 -12.95570 -12.93813 -12.63951 -12.47953 -12.36372 -12.30477 -12.06581 -11.90019 -11.80458 -11.52693 -11.46427 -11.05348 -10.98671 -10.10790 -9.91363 -9.76318 -9.32815 -8.05195 -5.39691 -0.06318 -0.03294 1.36634 1.41550 1.49180 1.56602 2.10849 2.46310 2.47238 2.86544 3.25518 3.31793 3.39506 3.46700 3.62499 3.81474 3.87912 3.94325 4.01649 4.06337 4.20975 4.31012 4.34517 4.37355 4.39030 4.55605 4.61617 4.73937 4.80965 4.81755 4.85507 4.89618 4.95920 4.99711 5.01381 5.03897 5.10252 5.19243 5.22924 5.29403 5.41153 5.48216 5.57065 5.72458 5.76459 6.19075 6.51265 7.05533 7.20676 7.81434 8.02281 9.16441 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.001989 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.892564 B =14071.590416 C =15351.171699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.149 3.851 8 N -0.760 5.760 9 C -0.242 4.242 10 H 0.051 0.949 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.963 3.037 14 H -0.274 1.274 15 H -0.294 1.294 16 H -0.250 1.250 17 N -0.711 5.711 18 C 0.515 3.485 19 O -0.578 6.578 20 C -0.104 4.104 21 C -0.154 4.154 22 C 0.118 3.882 23 F -0.137 7.137 24 C -0.161 4.161 25 C -0.053 4.053 26 C -0.165 4.165 27 C 0.113 3.887 28 F -0.142 7.142 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.021 0.979 39 H 0.014 0.986 40 H 0.368 0.632 41 H 0.259 0.741 42 H 0.415 0.585 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.167 0.833 46 H 0.182 0.818 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.373 5.729 -27.764 36.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.153 4.153 5 C -0.147 4.147 6 C -0.153 4.153 7 C 0.023 3.977 8 N -0.406 5.406 9 C -0.373 4.373 10 H 0.069 0.931 11 C -0.260 4.260 12 N -0.635 5.635 13 Si 0.790 3.210 14 H -0.200 1.200 15 H -0.221 1.221 16 H -0.174 1.174 17 N -0.364 5.364 18 C 0.302 3.698 19 O -0.458 6.458 20 C -0.143 4.143 21 C -0.156 4.156 22 C 0.099 3.901 23 F -0.116 7.116 24 C -0.180 4.180 25 C -0.071 4.071 26 C -0.183 4.183 27 C 0.094 3.906 28 F -0.120 7.120 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.032 0.968 40 H 0.201 0.799 41 H 0.068 0.932 42 H 0.252 0.748 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.184 0.816 46 H 0.199 0.801 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.370 6.576 -27.784 36.897 hybrid contribution 0.330 -0.975 1.270 1.635 sum -23.041 5.601 -26.514 35.570 Atomic orbital electron populations 1.22104 0.94370 1.02905 1.02048 1.20981 0.94446 0.96636 0.84145 0.91862 1.21843 0.94534 1.02168 0.96717 1.21440 0.95938 1.00116 0.97159 1.21658 0.93092 1.01585 0.98986 1.20849 0.94496 0.94333 0.87987 1.42749 1.03493 1.66689 1.27695 1.19062 0.84027 1.28158 1.06083 0.93108 1.25644 0.97802 1.02100 1.00459 1.69903 1.14303 1.49772 1.29522 0.85289 0.79156 0.78907 0.77697 1.19985 1.22093 1.17396 1.46021 1.66641 1.14759 1.08960 1.20732 0.76909 0.86914 0.85220 1.90691 1.51745 1.17716 1.85621 1.20584 1.06120 0.98026 0.89619 1.19425 0.93881 1.02737 0.99536 1.17425 0.81976 0.93980 0.96712 1.91489 1.49540 1.76074 1.94482 1.21571 1.01742 0.96816 0.97862 1.21307 0.89919 0.97213 0.98633 1.21572 1.02550 0.99329 0.94871 1.17549 0.83433 0.98240 0.91426 1.91505 1.53646 1.94564 1.72301 0.94259 0.90925 0.90482 0.89304 0.89312 0.91665 0.92969 0.91649 0.90831 0.96112 0.96816 0.79892 0.93224 0.74797 0.85841 0.85085 0.81575 0.80087 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 2 C 0.14 2.54 2.57 45.00 0.12 2.66 16 3 H 0.06 1.48 7.58 -2.39 -0.02 1.47 16 4 C -0.11 -1.79 4.75 30.60 0.15 -1.65 16 5 C -0.11 -2.33 5.10 30.60 0.16 -2.18 16 6 C -0.12 -3.13 5.33 30.59 0.16 -2.97 16 7 C 0.15 5.81 6.26 86.38 0.54 6.35 16 8 N -0.76 -36.68 5.41 -343.44 -1.86 -38.53 16 9 C -0.24 -14.39 10.47 84.03 0.88 -13.51 16 10 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 11 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 12 N -0.98 -64.43 13.97 21.65 0.30 -64.13 16 13 Si 0.96 45.79 27.74 68.60 1.90 47.69 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 16 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 17 N -0.71 -11.96 4.53 -442.52 -2.00 -13.97 16 18 C 0.52 11.29 7.79 87.66 0.68 11.97 16 19 O -0.58 -17.64 15.70 -3.04 -0.05 -17.69 16 20 C -0.10 -1.74 5.48 29.10 0.16 -1.58 16 21 C -0.15 -2.97 4.38 -19.78 -0.09 -3.06 16 22 C 0.12 2.08 7.24 22.37 0.16 2.25 16 23 F -0.14 -2.58 16.47 44.97 0.74 -1.83 16 24 C -0.16 -1.92 10.03 22.32 0.22 -1.70 16 25 C -0.05 -0.49 10.04 22.26 0.22 -0.27 16 26 C -0.16 -2.24 10.03 22.32 0.22 -2.01 16 27 C 0.11 2.22 7.24 22.37 0.16 2.38 16 28 F -0.14 -3.27 16.48 44.97 0.74 -2.53 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.37 7.75 -2.39 -0.02 1.36 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.37 16.50 5.53 -92.71 -0.51 15.99 16 41 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 42 H 0.42 4.64 8.60 -92.71 -0.80 3.84 16 43 H 0.12 1.75 7.64 -2.38 -0.02 1.73 16 44 H 0.13 1.56 7.63 -2.39 -0.02 1.54 16 45 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 46 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 47 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -80.80 399.42 4.30 -76.50 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.38 Total: 23.28 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.90 Total: -8.79 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -3.56 Total: -116.63 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.05 Total: -17.69 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 1.48 Total: -4.36 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -80.80 4.30 -76.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174961757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.142 kcal (2) G-P(sol) polarization free energy of solvation -80.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds