Wall clock time and date at job start Tue Mar 31 2020 23:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21284 * 119.99958 * 2 1 4 4 N 1.34778 * 120.00329 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99945 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47230 * 34.99888 * 5 4 2 7 7 C 1.52995 * 109.47244 * 274.99789 * 5 4 2 8 8 C 1.50702 * 109.46711 * 154.99499 * 5 4 2 9 9 O 1.20824 * 120.00404 * 0.02562 * 8 5 4 10 10 O 1.34232 * 119.99926 * 179.97438 * 8 5 4 11 11 C 1.45204 * 117.00185 * 180.02562 * 10 8 5 12 12 H 1.08997 * 109.46989 * 29.99691 * 11 10 8 13 13 C 1.52999 * 109.46803 * 269.99963 * 11 10 8 14 14 C 1.50699 * 109.46964 * 150.00196 * 11 10 8 15 15 O 1.21273 * 120.00247 * 5.00031 * 14 11 10 16 16 N 1.34776 * 119.99532 * 184.99881 * 14 11 10 17 17 C 1.46504 * 119.99893 * 179.97438 * 16 14 11 18 18 H 1.09000 * 109.41466 * 324.86516 * 17 16 14 19 19 C 1.52964 * 109.35389 * 84.68405 * 17 16 14 20 20 C 1.53656 * 109.32341 * 183.80022 * 19 17 16 21 21 C 1.51276 * 108.30997 * 305.13617 * 20 19 17 22 22 C 1.37877 * 120.85036 * 231.38090 * 21 20 19 23 23 N 1.31514 * 120.00089 * 180.28326 * 22 21 20 24 24 Si 1.86798 * 119.99938 * 0.28481 * 22 21 20 25 25 H 1.48506 * 109.47297 * 269.99556 * 24 22 21 26 26 H 1.48503 * 109.47261 * 149.99737 * 24 22 21 27 27 H 1.48500 * 109.47454 * 29.99730 * 24 22 21 28 28 C 1.51268 * 118.29842 * 51.66140 * 21 20 19 29 29 C 1.52959 * 109.41420 * 205.00111 * 17 16 14 30 30 H 1.09003 * 109.47270 * 269.99299 * 1 2 3 31 31 H 1.09000 * 109.47802 * 29.99701 * 1 2 3 32 32 H 1.09006 * 109.47327 * 149.99870 * 1 2 3 33 33 H 0.97003 * 119.99380 * 359.97438 * 4 2 1 34 34 H 1.09003 * 109.47051 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47088 * 300.00186 * 7 5 4 36 36 H 1.08992 * 109.47552 * 60.00139 * 7 5 4 37 37 H 1.08992 * 109.47550 * 299.99795 * 13 11 10 38 38 H 1.09003 * 109.47178 * 60.00028 * 13 11 10 39 39 H 1.09003 * 109.47216 * 179.97438 * 13 11 10 40 40 H 0.97003 * 120.00704 * 0.02562 * 16 14 11 41 41 H 1.09001 * 109.47952 * 303.64782 * 19 17 16 42 42 H 1.09000 * 109.47961 * 63.67570 * 19 17 16 43 43 H 1.09002 * 109.69096 * 185.52260 * 20 19 17 44 44 H 1.08999 * 109.78780 * 64.80997 * 20 19 17 45 45 H 0.96997 * 119.99848 * 180.02562 * 23 22 21 46 46 H 1.08999 * 109.62769 * 68.10885 * 28 21 20 47 47 H 1.08993 * 109.62585 * 188.68918 * 28 21 20 48 48 H 1.08994 * 109.48055 * 56.38791 * 29 17 16 49 49 H 1.08999 * 109.49012 * 296.35275 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5884 7 6 4.1553 -1.0411 -1.4382 8 6 4.1484 -2.4549 0.5990 9 8 3.3635 -3.2875 0.9869 10 8 5.4682 -2.6774 0.7017 11 6 5.8802 -3.9397 1.2894 12 1 5.1295 -4.7011 1.0778 13 6 6.0258 -3.7739 2.8034 14 6 7.2021 -4.3601 0.7006 15 8 7.7876 -3.6226 -0.0636 16 7 7.7337 -5.5558 1.0234 17 6 9.0186 -5.9649 0.4506 18 1 9.0965 -5.5892 -0.5696 19 6 10.1565 -5.3866 1.2936 20 6 11.5022 -5.7358 0.6393 21 6 11.5651 -7.2358 0.4532 22 6 12.6500 -7.9590 0.9017 23 7 12.6899 -9.2617 0.7262 24 14 14.0631 -7.0883 1.7586 25 1 15.0718 -6.6719 0.7513 26 1 14.6926 -8.0110 2.7372 27 1 13.5486 -5.8898 2.4686 28 6 10.4103 -7.9211 -0.2431 29 6 9.1066 -7.4919 0.4382 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3635 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 1.6958 -2.0072 -0.0005 34 1 5.2454 -1.0414 -1.4386 35 1 3.7918 -1.8828 -2.0277 36 1 3.7919 -0.1097 -1.8722 37 1 6.7764 -3.0125 3.0150 38 1 5.0696 -3.4697 3.2292 39 1 6.3346 -4.7215 3.2446 40 1 7.2653 -6.1459 1.6343 41 1 10.0519 -4.3032 1.3511 42 1 10.1164 -5.8096 2.2974 43 1 12.3191 -5.4124 1.2843 44 1 11.5801 -5.2431 -0.3299 45 1 13.4529 -9.7705 1.0420 46 1 10.3890 -7.6270 -1.2925 47 1 10.5253 -9.0022 -0.1652 48 1 8.2581 -7.9005 -0.1104 49 1 9.0915 -7.8653 1.4621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186727214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:46 Heat of formation + Delta-G solvation = -176.753939 kcal Electronic energy + Delta-G solvation = -29914.541189 eV Core-core repulsion = 25648.081210 eV Total energy + Delta-G solvation = -4266.459979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34725 -40.08263 -39.43152 -37.27355 -36.51009 -35.52516 -33.92950 -32.64922 -31.92330 -31.11391 -29.69524 -29.32940 -27.33936 -25.79744 -24.43330 -22.42515 -21.63964 -21.36586 -20.83260 -20.10672 -19.60660 -18.51322 -17.84274 -17.14949 -16.96235 -16.33890 -15.93070 -15.83202 -15.68249 -15.19735 -14.89838 -14.47252 -14.18744 -14.16128 -13.74315 -13.39810 -13.23820 -13.14381 -13.02589 -12.78758 -12.73181 -12.63136 -12.49570 -12.35453 -12.14695 -12.05548 -11.87661 -11.70499 -11.16259 -11.05979 -10.87218 -10.86082 -10.76173 -10.41366 -10.23447 -10.05834 -9.75305 -9.67549 -9.54650 -9.06556 -8.91462 -8.53369 -8.39018 -6.14298 -4.05324 1.67101 1.80223 2.17469 2.67243 2.78193 3.25356 3.33738 3.34826 3.35862 4.10854 4.34703 4.35278 4.51745 4.55007 4.61368 4.66502 4.74227 4.76502 4.93055 5.13320 5.19589 5.26915 5.32361 5.34704 5.41344 5.64351 5.74519 5.77407 5.80745 5.82991 5.99386 6.12073 6.37116 6.42645 6.63969 6.67352 6.83171 6.89312 6.95244 7.05701 7.15566 7.23088 7.39138 7.60098 7.63871 7.67886 7.70077 7.81259 8.33284 8.35164 8.91764 9.50526 10.95046 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.001947 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.835336 B =14373.994781 C =14539.376231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.517 3.483 3 O -0.542 6.542 4 N -0.719 5.719 5 C 0.154 3.846 6 H 0.129 0.871 7 C -0.160 4.160 8 C 0.462 3.538 9 O -0.506 6.506 10 O -0.317 6.317 11 C 0.069 3.931 12 H 0.110 0.890 13 C -0.165 4.165 14 C 0.512 3.488 15 O -0.519 6.519 16 N -0.717 5.717 17 C 0.155 3.845 18 H 0.080 0.920 19 C -0.113 4.113 20 C -0.019 4.019 21 C -0.489 4.489 22 C 0.076 3.924 23 N -0.890 5.890 24 Si 0.887 3.113 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.264 1.264 28 C 0.013 3.987 29 C -0.114 4.114 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.411 0.589 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.395 0.605 41 H 0.037 0.963 42 H 0.052 0.948 43 H 0.036 0.964 44 H 0.020 0.980 45 H 0.264 0.736 46 H 0.007 0.993 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.136 12.099 1.610 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.304 3.696 3 O -0.419 6.419 4 N -0.375 5.375 5 C 0.047 3.953 6 H 0.146 0.854 7 C -0.218 4.218 8 C 0.304 3.696 9 O -0.394 6.394 10 O -0.232 6.232 11 C 0.011 3.989 12 H 0.127 0.873 13 C -0.222 4.222 14 C 0.295 3.705 15 O -0.395 6.395 16 N -0.368 5.368 17 C 0.053 3.947 18 H 0.098 0.902 19 C -0.152 4.152 20 C -0.057 4.057 21 C -0.508 4.508 22 C -0.127 4.127 23 N -0.528 5.528 24 Si 0.716 3.284 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.190 1.190 28 C -0.025 4.025 29 C -0.152 4.152 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.248 0.752 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.229 0.771 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.350 12.944 1.202 25.856 hybrid contribution 0.241 -0.575 0.992 1.172 sum -22.109 12.369 2.194 25.429 Atomic orbital electron populations 1.21872 0.90789 1.05193 1.05131 1.20879 0.90818 0.82892 0.74986 1.90757 1.70697 1.31236 1.49207 1.45983 1.05352 1.10151 1.76061 1.20340 0.81774 0.93783 0.99368 0.85387 1.22146 1.03392 1.03576 0.92721 1.23712 0.81398 0.88929 0.75532 1.90652 1.56597 1.46174 1.45988 1.86618 1.24322 1.38691 1.73524 1.22647 0.96520 0.85346 0.94415 0.87266 1.22157 1.03875 1.04510 0.91706 1.19918 0.85894 0.82524 0.82133 1.90742 1.61840 1.51954 1.34922 1.46344 1.24075 1.17721 1.48678 1.21145 0.79887 0.96075 0.97590 0.90210 1.21971 0.96726 0.97555 0.98933 1.19872 0.92787 0.96887 0.96182 1.20050 1.03293 0.90401 1.37026 1.24845 0.97672 0.94657 0.95492 1.69830 1.30641 1.05825 1.46467 0.86675 0.82350 0.79489 0.79931 1.20378 1.21666 1.18955 1.19345 0.89911 0.99285 0.93978 1.21943 1.00082 0.91970 1.01242 0.88530 0.88536 0.89896 0.75202 0.89293 0.91675 0.90285 0.90543 0.90953 0.89590 0.77126 0.94442 0.92953 0.94551 0.96170 0.92574 0.97508 0.92002 0.94543 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.30 36.00 0.37 -0.31 16 2 C 0.52 4.18 7.90 -10.99 -0.09 4.09 16 3 O -0.54 -6.62 16.76 5.55 0.09 -6.52 16 4 N -0.72 -5.39 4.95 -54.94 -0.27 -5.66 16 5 C 0.15 1.39 3.09 -69.09 -0.21 1.17 16 6 H 0.13 1.20 7.58 -51.93 -0.39 0.81 16 7 C -0.16 -1.37 9.42 37.15 0.35 -1.02 16 8 C 0.46 4.96 7.30 36.01 0.26 5.23 16 9 O -0.51 -5.86 15.06 -18.75 -0.28 -6.14 16 10 O -0.32 -3.97 9.32 -45.89 -0.43 -4.40 16 11 C 0.07 0.82 2.97 -27.88 -0.08 0.74 16 12 H 0.11 1.16 7.16 -51.93 -0.37 0.79 16 13 C -0.16 -1.58 9.50 37.16 0.35 -1.23 16 14 C 0.51 7.86 7.14 -10.99 -0.08 7.78 16 15 O -0.52 -10.16 16.17 -14.04 -0.23 -10.38 16 16 N -0.72 -10.54 5.03 -53.84 -0.27 -10.81 16 17 C 0.16 2.90 2.35 -67.97 -0.16 2.74 16 18 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 19 C -0.11 -2.29 5.51 -26.41 -0.15 -2.44 16 20 C -0.02 -0.45 5.62 -27.26 -0.15 -0.60 16 21 C -0.49 -12.51 5.50 -98.92 -0.54 -13.05 16 22 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 23 N -0.89 -24.94 12.73 55.43 0.71 -24.24 16 24 Si 0.89 20.76 27.52 -169.99 -4.68 16.08 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.26 -6.00 6.11 56.52 0.35 -5.65 16 28 C 0.01 0.30 5.97 -27.48 -0.16 0.14 16 29 C -0.11 -2.21 5.40 -26.63 -0.14 -2.35 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.41 2.49 7.79 -40.82 -0.32 2.18 16 34 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.68 7.93 -51.93 -0.41 0.27 16 40 H 0.40 4.55 8.38 -40.82 -0.34 4.21 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.84 4.60 -51.93 -0.24 0.60 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 48 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -33.02 401.67 -7.78 -40.80 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.94 Total: 2.40 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.53 Total: 2.82 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.16 Total: -40.71 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.84 Total: -27.45 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.68 Total: 16.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.02 -7.78 -40.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186727214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.949 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds