Wall clock time and date at job start Tue Mar 31 2020 23:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21284 * 119.99958 * 2 1 4 4 N 1.34778 * 120.00329 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99945 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47230 * 34.99888 * 5 4 2 7 7 C 1.52995 * 109.47244 * 274.99789 * 5 4 2 8 8 C 1.50702 * 109.46711 * 154.99499 * 5 4 2 9 9 O 1.20824 * 120.00404 * 0.02562 * 8 5 4 10 10 O 1.34232 * 119.99926 * 179.97438 * 8 5 4 11 11 C 1.45204 * 117.00185 * 180.02562 * 10 8 5 12 12 H 1.08997 * 109.46989 * 29.99691 * 11 10 8 13 13 C 1.52999 * 109.46803 * 269.99963 * 11 10 8 14 14 C 1.50699 * 109.46964 * 150.00196 * 11 10 8 15 15 O 1.21273 * 120.00247 * 5.00031 * 14 11 10 16 16 N 1.34776 * 119.99532 * 184.99881 * 14 11 10 17 17 C 1.46504 * 119.99893 * 179.97438 * 16 14 11 18 18 H 1.09000 * 109.41466 * 324.86516 * 17 16 14 19 19 C 1.52964 * 109.35389 * 84.68405 * 17 16 14 20 20 C 1.53656 * 109.32341 * 183.80022 * 19 17 16 21 21 C 1.51276 * 108.30997 * 305.13617 * 20 19 17 22 22 C 1.37877 * 120.85036 * 231.38090 * 21 20 19 23 23 N 1.31514 * 120.00089 * 180.28326 * 22 21 20 24 24 Si 1.86798 * 119.99938 * 0.28481 * 22 21 20 25 25 H 1.48506 * 109.47297 * 269.99556 * 24 22 21 26 26 H 1.48503 * 109.47261 * 149.99737 * 24 22 21 27 27 H 1.48500 * 109.47454 * 29.99730 * 24 22 21 28 28 C 1.51268 * 118.29842 * 51.66140 * 21 20 19 29 29 C 1.52959 * 109.41420 * 205.00111 * 17 16 14 30 30 H 1.09003 * 109.47270 * 269.99299 * 1 2 3 31 31 H 1.09000 * 109.47802 * 29.99701 * 1 2 3 32 32 H 1.09006 * 109.47327 * 149.99870 * 1 2 3 33 33 H 0.97003 * 119.99380 * 359.97438 * 4 2 1 34 34 H 1.09003 * 109.47051 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47088 * 300.00186 * 7 5 4 36 36 H 1.08992 * 109.47552 * 60.00139 * 7 5 4 37 37 H 1.08992 * 109.47550 * 299.99795 * 13 11 10 38 38 H 1.09003 * 109.47178 * 60.00028 * 13 11 10 39 39 H 1.09003 * 109.47216 * 179.97438 * 13 11 10 40 40 H 0.97003 * 120.00704 * 0.02562 * 16 14 11 41 41 H 1.09001 * 109.47952 * 303.64782 * 19 17 16 42 42 H 1.09000 * 109.47961 * 63.67570 * 19 17 16 43 43 H 1.09002 * 109.69096 * 185.52260 * 20 19 17 44 44 H 1.08999 * 109.78780 * 64.80997 * 20 19 17 45 45 H 0.96997 * 119.99848 * 180.02562 * 23 22 21 46 46 H 1.08999 * 109.62769 * 68.10885 * 28 21 20 47 47 H 1.08993 * 109.62585 * 188.68918 * 28 21 20 48 48 H 1.08994 * 109.48055 * 56.38791 * 29 17 16 49 49 H 1.08999 * 109.49012 * 296.35275 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0094 -0.3254 0.5884 7 6 4.1553 -1.0411 -1.4382 8 6 4.1484 -2.4549 0.5990 9 8 3.3635 -3.2875 0.9869 10 8 5.4682 -2.6774 0.7017 11 6 5.8802 -3.9397 1.2894 12 1 5.1295 -4.7011 1.0778 13 6 6.0258 -3.7739 2.8034 14 6 7.2021 -4.3601 0.7006 15 8 7.7876 -3.6226 -0.0636 16 7 7.7337 -5.5558 1.0234 17 6 9.0186 -5.9649 0.4506 18 1 9.0965 -5.5892 -0.5696 19 6 10.1565 -5.3866 1.2936 20 6 11.5022 -5.7358 0.6393 21 6 11.5651 -7.2358 0.4532 22 6 12.6500 -7.9590 0.9017 23 7 12.6899 -9.2617 0.7262 24 14 14.0631 -7.0883 1.7586 25 1 15.0718 -6.6719 0.7513 26 1 14.6926 -8.0110 2.7372 27 1 13.5486 -5.8898 2.4686 28 6 10.4103 -7.9211 -0.2431 29 6 9.1066 -7.4919 0.4382 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3635 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 1.6958 -2.0072 -0.0005 34 1 5.2454 -1.0414 -1.4386 35 1 3.7918 -1.8828 -2.0277 36 1 3.7919 -0.1097 -1.8722 37 1 6.7764 -3.0125 3.0150 38 1 5.0696 -3.4697 3.2292 39 1 6.3346 -4.7215 3.2446 40 1 7.2653 -6.1459 1.6343 41 1 10.0519 -4.3032 1.3511 42 1 10.1164 -5.8096 2.2974 43 1 12.3191 -5.4124 1.2843 44 1 11.5801 -5.2431 -0.3299 45 1 13.4529 -9.7705 1.0420 46 1 10.3890 -7.6270 -1.2925 47 1 10.5253 -9.0022 -0.1652 48 1 8.2581 -7.9005 -0.1104 49 1 9.0915 -7.8653 1.4621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186727214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:45 Heat of formation + Delta-G solvation = -198.783168 kcal Electronic energy + Delta-G solvation = -29915.496448 eV Core-core repulsion = 25648.081210 eV Total energy + Delta-G solvation = -4267.415238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23335 -41.05718 -40.44311 -38.60247 -37.74037 -36.27423 -35.48606 -33.92167 -32.95055 -32.24914 -31.44889 -29.80339 -29.02882 -26.62030 -25.44284 -23.96893 -23.32900 -22.37382 -21.54434 -21.37100 -21.20652 -19.32635 -18.91052 -18.15418 -17.82978 -17.66312 -17.15437 -17.02013 -16.43603 -16.34531 -16.21795 -15.92809 -15.33103 -14.99931 -14.83504 -14.68542 -14.51599 -14.23707 -14.10088 -14.00838 -13.85138 -13.53668 -13.47071 -13.40855 -13.26224 -13.02177 -12.80947 -12.76611 -12.74559 -12.67867 -12.57166 -12.06071 -11.94709 -11.82725 -11.70000 -11.40604 -11.11103 -11.06303 -10.79009 -10.63918 -10.52856 -10.42302 -9.95998 -8.16858 -6.10976 0.81407 0.96238 1.38940 1.42521 1.46636 1.49803 1.55797 2.03824 2.32509 2.41119 3.10583 3.27993 3.49165 3.71915 3.79064 3.81774 3.87241 4.00311 4.04226 4.19964 4.47622 4.49107 4.51619 4.59493 4.60693 4.67223 4.68253 4.72217 4.83644 4.95954 5.00985 5.05834 5.07178 5.07682 5.10562 5.13043 5.22153 5.23385 5.24869 5.56099 5.56146 5.66321 5.76115 5.82296 6.32237 6.35067 6.40392 6.53727 6.94651 7.10902 7.16339 7.47225 8.93376 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.001947 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.835336 B =14373.994781 C =14539.376231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.513 3.487 3 O -0.589 6.589 4 N -0.711 5.711 5 C 0.155 3.845 6 H 0.123 0.877 7 C -0.154 4.154 8 C 0.468 3.532 9 O -0.512 6.512 10 O -0.334 6.334 11 C 0.075 3.925 12 H 0.128 0.872 13 C -0.161 4.161 14 C 0.513 3.487 15 O -0.565 6.565 16 N -0.703 5.703 17 C 0.167 3.833 18 H 0.057 0.943 19 C -0.106 4.106 20 C -0.022 4.022 21 C -0.498 4.498 22 C 0.025 3.975 23 N -0.927 5.927 24 Si 0.936 3.064 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.251 1.251 28 C 0.007 3.993 29 C -0.100 4.100 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.420 0.580 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.415 0.585 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.013 0.987 45 H 0.263 0.737 46 H -0.004 1.004 47 H 0.035 0.965 48 H 0.060 0.940 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.488 12.639 2.889 28.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.303 3.697 3 O -0.469 6.469 4 N -0.367 5.367 5 C 0.048 3.952 6 H 0.141 0.859 7 C -0.212 4.212 8 C 0.310 3.690 9 O -0.400 6.400 10 O -0.249 6.249 11 C 0.016 3.984 12 H 0.145 0.855 13 C -0.218 4.218 14 C 0.298 3.702 15 O -0.443 6.443 16 N -0.355 5.355 17 C 0.063 3.937 18 H 0.075 0.925 19 C -0.145 4.145 20 C -0.061 4.061 21 C -0.517 4.517 22 C -0.173 4.173 23 N -0.567 5.567 24 Si 0.763 3.237 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.175 1.175 28 C -0.031 4.031 29 C -0.138 4.138 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.259 0.741 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.252 0.748 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.015 0.985 47 H 0.053 0.947 48 H 0.079 0.921 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.754 13.456 2.508 28.286 hybrid contribution 0.934 -0.749 0.516 1.304 sum -23.821 12.707 3.025 27.167 Atomic orbital electron populations 1.21914 0.87288 1.06551 1.06468 1.21664 0.92394 0.82059 0.73572 1.90739 1.71917 1.32810 1.51458 1.45975 1.04606 1.10640 1.75507 1.20297 0.82835 0.92746 0.99301 0.85945 1.22077 1.02738 1.03817 0.92580 1.23897 0.80717 0.89196 0.75161 1.90642 1.56512 1.46528 1.46345 1.86619 1.25353 1.39008 1.73916 1.22644 0.94555 0.85761 0.95395 0.85497 1.22188 1.04369 1.05451 0.89802 1.20505 0.86747 0.81790 0.81143 1.90729 1.63385 1.53256 1.36966 1.45992 1.22747 1.18118 1.48682 1.20696 0.81322 0.95232 0.96414 0.92487 1.21845 0.95612 0.97842 0.99154 1.19882 0.94717 0.95272 0.96180 1.20587 1.03449 0.91730 1.35912 1.25547 0.99898 0.95187 0.96685 1.69949 1.31412 1.07113 1.48238 0.85872 0.79800 0.78966 0.79037 1.20550 1.21657 1.17520 1.19313 0.92286 0.97616 0.93887 1.21701 0.98361 0.92507 1.01274 0.87033 0.88343 0.87385 0.74128 0.90273 0.90982 0.90336 0.91393 0.89782 0.87531 0.74775 0.94151 0.92163 0.94526 0.96892 0.92779 0.98527 0.94673 0.92097 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 10.30 71.23 0.73 -0.16 16 2 C 0.51 7.62 7.90 87.65 0.69 8.31 16 3 O -0.59 -14.23 16.76 -3.04 -0.05 -14.28 16 4 N -0.71 -9.52 4.95 -446.11 -2.21 -11.73 16 5 C 0.16 2.66 3.09 44.24 0.14 2.79 16 6 H 0.12 2.27 7.58 -2.39 -0.02 2.26 16 7 C -0.15 -2.55 9.42 71.98 0.68 -1.87 16 8 C 0.47 9.29 7.30 71.24 0.52 9.81 16 9 O -0.51 -10.61 15.06 21.97 0.33 -10.27 16 10 O -0.33 -7.91 9.32 -45.09 -0.42 -8.33 16 11 C 0.07 1.59 2.97 29.85 0.09 1.68 16 12 H 0.13 2.29 7.16 -2.39 -0.02 2.27 16 13 C -0.16 -2.60 9.50 71.98 0.68 -1.92 16 14 C 0.51 14.83 7.14 87.66 0.63 15.46 16 15 O -0.57 -21.79 16.17 15.74 0.25 -21.54 16 16 N -0.70 -18.95 5.03 -442.66 -2.23 -21.18 16 17 C 0.17 6.00 2.35 44.97 0.11 6.11 16 18 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 19 C -0.11 -4.13 5.51 30.80 0.17 -3.96 16 20 C -0.02 -1.03 5.62 30.25 0.17 -0.86 16 21 C -0.50 -25.53 5.50 -16.17 -0.09 -25.62 16 22 C 0.03 1.37 5.46 84.65 0.46 1.83 16 23 N -0.93 -52.96 12.73 21.45 0.27 -52.69 16 24 Si 0.94 42.55 27.52 68.60 1.89 44.43 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.25 -10.73 6.11 99.48 0.61 -10.12 16 28 C 0.01 0.34 5.97 30.11 0.18 0.52 16 29 C -0.10 -3.74 5.40 30.66 0.17 -3.57 16 30 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.42 4.13 7.79 -92.71 -0.72 3.41 16 34 H 0.08 1.47 8.11 -2.39 -0.02 1.45 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.28 7.93 -2.39 -0.02 1.26 16 40 H 0.42 8.07 8.38 -92.71 -0.78 7.29 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.04 1.65 4.60 -2.39 -0.01 1.64 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 46 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.03 1.86 7.07 -2.39 -0.02 1.84 16 48 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -72.73 401.67 2.54 -70.19 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.62 Total: 16.84 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.32 Total: 8.55 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -4.16 Total: -85.60 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: 0.11 Total: -54.43 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.89 Total: 44.43 kcal Total: -72.73 2.54 -70.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186727214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.591 kcal (2) G-P(sol) polarization free energy of solvation -72.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds