Wall clock time and date at job start Tue Mar 31 2020 23:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47449 * 2 1 4 4 O 1.42903 * 109.47355 * 239.99556 * 2 1 3 5 5 C 1.53004 * 109.46979 * 119.99538 * 2 1 3 6 6 C 1.53005 * 109.46888 * 182.85104 * 5 2 1 7 7 H 1.08997 * 109.67593 * 298.74465 * 6 5 2 8 8 C 1.53290 * 109.68408 * 59.30048 * 6 5 2 9 9 O 1.42963 * 109.22367 * 172.02480 * 8 6 5 10 10 C 1.42962 * 114.16621 * 297.41728 * 9 8 6 11 11 C 1.53302 * 109.21906 * 62.58136 * 10 9 8 12 12 N 1.47144 * 108.38465 * 307.69440 * 11 10 9 13 13 C 1.34782 * 120.98621 * 230.51477 * 12 11 10 14 14 O 1.21342 * 120.00094 * 174.70813 * 13 12 11 15 15 C 1.49454 * 119.99555 * 354.70563 * 13 12 11 16 16 O 1.21346 * 119.99953 * 352.63940 * 15 13 12 17 17 N 1.34775 * 119.99874 * 172.64423 * 15 13 12 18 18 C 1.46496 * 119.99857 * 185.01981 * 17 15 13 19 19 C 1.53009 * 109.47023 * 184.95252 * 18 17 15 20 20 C 1.50697 * 115.54744 * 278.37660 * 19 18 17 21 21 H 1.07997 * 119.99536 * 143.63963 * 20 19 18 22 22 C 1.37875 * 120.00135 * 323.63943 * 20 19 18 23 23 N 1.31518 * 120.00090 * 355.92373 * 22 20 19 24 24 Si 1.86792 * 120.00097 * 175.92476 * 22 20 19 25 25 H 1.48502 * 109.47195 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47526 * 119.99792 * 24 22 20 27 27 H 1.48507 * 109.47321 * 240.00055 * 24 22 20 28 28 C 1.53003 * 117.49805 * 132.66657 * 19 18 17 29 29 C 1.52998 * 59.99961 * 252.51053 * 28 19 18 30 30 H 1.08997 * 109.47035 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47595 * 300.00247 * 1 2 3 32 32 H 1.09007 * 109.46891 * 60.00445 * 1 2 3 33 33 H 0.96700 * 114.00002 * 295.06626 * 4 2 1 34 34 H 1.08994 * 109.47086 * 302.84843 * 5 2 1 35 35 H 1.08994 * 109.46987 * 62.85459 * 5 2 1 36 36 H 1.09002 * 109.51598 * 291.94999 * 8 6 5 37 37 H 1.09002 * 109.51237 * 52.09552 * 8 6 5 38 38 H 1.09001 * 109.51589 * 302.65971 * 10 9 8 39 39 H 1.08997 * 109.55640 * 182.53041 * 10 9 8 40 40 H 1.09000 * 109.67670 * 187.97666 * 11 10 9 41 41 H 1.09000 * 109.71041 * 67.44080 * 11 10 9 42 42 H 0.97001 * 119.99847 * 5.01423 * 17 15 13 43 43 H 1.08999 * 109.47080 * 304.94609 * 18 17 15 44 44 H 1.09000 * 109.47643 * 64.94942 * 18 17 15 45 45 H 0.96994 * 120.00307 * 185.00483 * 23 22 20 46 46 H 1.09001 * 117.49759 * 0.02562 * 28 19 18 47 47 H 1.08994 * 117.49625 * 145.01939 * 28 19 18 48 48 H 1.09000 * 117.50318 * 252.50942 * 29 28 19 49 49 H 1.09000 * 117.51361 * 107.48152 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 3.5683 -0.6593 1.2857 7 1 3.9769 -1.1616 0.4089 8 6 4.0255 0.8037 1.3035 9 8 5.4372 0.8530 1.5244 10 6 5.8518 0.3158 2.7827 11 6 5.4880 -1.1723 2.8406 12 7 4.0619 -1.3147 2.5073 13 6 3.2322 -2.0249 3.2972 14 8 2.0427 -2.0517 3.0590 15 6 3.7774 -2.7794 4.4664 16 8 4.9771 -2.8635 4.6283 17 7 2.9367 -3.3665 5.3409 18 6 3.4656 -4.0116 6.5452 19 6 2.3253 -4.7012 7.2971 20 6 1.4931 -3.8060 8.1785 21 1 0.4302 -3.9743 8.2689 22 6 2.0887 -2.7722 8.8695 23 7 3.3937 -2.6161 8.8232 24 14 1.0420 -1.5933 9.8715 25 1 -0.3867 -1.9826 9.7598 26 1 1.4605 -1.6475 11.2953 27 1 1.2200 -0.2122 9.3554 28 6 2.5565 -6.1389 7.7668 29 6 1.6143 -5.8594 6.5942 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7846 -1.6145 -1.1957 34 1 1.6355 -0.2376 2.1385 35 1 1.7190 -1.7625 1.2242 36 1 3.7902 1.2704 0.3470 37 1 3.5128 1.3357 2.1048 38 1 5.3457 0.8460 3.5895 39 1 6.9301 0.4315 2.8913 40 1 5.6704 -1.5559 3.8445 41 1 6.0904 -1.7263 2.1208 42 1 1.9813 -3.3619 5.1730 43 1 4.2139 -4.7518 6.2620 44 1 3.9232 -3.2603 7.1888 45 1 3.8202 -1.9347 9.3660 46 1 3.5212 -6.5933 7.5405 47 1 2.1068 -6.4374 8.7137 48 1 0.5447 -5.9741 6.7696 49 1 1.9587 -6.1298 5.5960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256791923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:20 Heat of formation + Delta-G solvation = -109.585297 kcal Electronic energy + Delta-G solvation = -31490.117083 eV Core-core repulsion = 27226.569755 eV Total energy + Delta-G solvation = -4263.547328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04531 -39.14042 -38.05592 -37.71509 -36.87103 -34.98008 -33.33441 -32.94990 -32.39037 -30.79021 -28.67314 -26.73773 -26.37805 -25.66724 -24.13991 -23.12601 -21.66980 -21.43194 -21.01738 -19.62236 -19.15737 -17.65171 -16.87044 -16.74731 -16.54530 -16.28873 -15.85761 -15.54279 -15.51577 -15.10338 -14.89574 -14.81678 -14.58044 -14.10800 -13.97083 -13.66026 -13.46003 -13.10565 -13.05925 -12.71320 -12.55215 -12.27725 -12.08731 -11.87269 -11.74184 -11.56242 -11.24029 -11.16152 -11.15230 -11.00208 -10.79394 -10.58587 -10.39877 -10.33456 -10.30790 -10.04659 -9.69877 -9.17250 -9.00594 -8.71932 -8.57377 -8.39624 -8.14073 -6.11611 -4.30916 1.76791 2.50668 3.15946 3.25807 3.29008 3.57721 3.66144 3.78981 4.19676 4.21967 4.51285 4.60813 4.72631 4.82195 4.87967 4.94111 4.97245 5.02880 5.14202 5.18945 5.31763 5.39741 5.44899 5.52687 5.60496 5.64605 5.74164 5.89384 5.92137 5.99379 6.06268 6.10617 6.20836 6.39946 6.43048 6.54548 6.57037 6.78714 6.91995 6.95295 7.12945 7.14847 7.23957 7.43573 7.45796 7.77835 7.98960 8.16467 8.26518 8.57573 8.71531 9.34120 10.77743 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003284 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.991288 B = 8523.580809 C = 8821.155044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.095 0.905 4 O -0.566 6.566 5 C -0.142 4.142 6 C 0.114 3.886 7 H 0.088 0.912 8 C 0.051 3.949 9 O -0.382 6.382 10 C 0.045 3.955 11 C 0.036 3.964 12 N -0.588 5.588 13 C 0.512 3.488 14 O -0.519 6.519 15 C 0.492 3.508 16 O -0.533 6.533 17 N -0.659 5.659 18 C 0.120 3.880 19 C 0.033 3.967 20 C -0.484 4.484 21 H 0.064 0.936 22 C 0.068 3.932 23 N -0.881 5.881 24 Si 0.900 3.100 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.192 4.192 29 C -0.209 4.209 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.375 0.625 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.157 0.843 41 H 0.074 0.926 42 H 0.407 0.593 43 H 0.036 0.964 44 H 0.155 0.845 45 H 0.266 0.734 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 5.266 -14.550 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.031 3.969 3 H 0.113 0.887 4 O -0.372 6.372 5 C -0.180 4.180 6 C 0.011 3.989 7 H 0.106 0.894 8 C -0.027 4.027 9 O -0.300 6.300 10 C -0.032 4.032 11 C -0.086 4.086 12 N -0.323 5.323 13 C 0.295 3.705 14 O -0.396 6.396 15 C 0.272 3.728 16 O -0.414 6.414 17 N -0.306 5.306 18 C -0.001 4.001 19 C 0.033 3.967 20 C -0.521 4.521 21 H 0.082 0.918 22 C -0.133 4.133 23 N -0.519 5.519 24 Si 0.728 3.272 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.230 4.230 29 C -0.247 4.247 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.222 0.778 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.173 0.827 41 H 0.092 0.908 42 H 0.243 0.757 43 H 0.055 0.945 44 H 0.172 0.828 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.128 6.024 -14.730 15.954 hybrid contribution -1.331 -0.194 0.810 1.571 sum -0.203 5.830 -13.919 15.092 Atomic orbital electron populations 1.22414 0.96135 1.02794 1.02465 1.22186 0.93345 0.96630 0.84710 0.88695 1.86546 1.80760 1.26716 1.43151 1.22872 0.92768 1.04012 0.98349 1.22014 0.95808 0.93986 0.87063 0.89382 1.23118 0.82176 0.94971 1.02405 1.87947 1.22248 1.82453 1.37359 1.23105 1.01205 0.93089 0.85841 1.23614 0.79614 0.97067 1.08267 1.48023 1.10292 1.50197 1.23739 1.20539 0.86177 0.79947 0.83787 1.90741 1.15194 1.62524 1.71093 1.19895 0.87019 0.81896 0.83983 1.90398 1.14626 1.60978 1.75443 1.46020 1.10906 1.51896 1.21801 1.22205 0.95088 0.99683 0.83162 1.19228 0.94981 0.86259 0.96264 1.20662 0.94135 1.11379 1.25918 0.91770 1.24995 0.95067 0.96927 0.96357 1.69276 1.08533 1.34870 1.39237 0.86392 0.80501 0.80639 0.79698 1.19595 1.20748 1.20794 1.22962 0.98685 1.04046 0.97332 1.22886 0.97465 1.08932 0.95379 0.92135 0.91488 0.92063 0.77776 0.89493 0.88410 0.87568 0.92680 0.92635 0.87467 0.82679 0.90752 0.75747 0.94534 0.82846 0.92280 0.91357 0.90021 0.90348 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.56 37.15 0.36 -1.21 16 2 C 0.09 0.85 3.34 -26.73 -0.09 0.76 16 3 H 0.10 0.84 6.47 -51.93 -0.34 0.50 16 4 O -0.57 -5.51 12.82 -35.23 -0.45 -5.96 16 5 C -0.14 -1.63 2.83 -26.73 -0.08 -1.70 16 6 C 0.11 1.38 3.08 -67.42 -0.21 1.17 16 7 H 0.09 1.06 7.81 -51.93 -0.41 0.66 16 8 C 0.05 0.57 5.66 37.31 0.21 0.78 16 9 O -0.38 -4.80 10.74 -35.23 -0.38 -5.18 16 10 C 0.04 0.53 6.99 37.31 0.26 0.79 16 11 C 0.04 0.48 6.20 -3.53 -0.02 0.46 16 12 N -0.59 -8.38 3.02 -165.25 -0.50 -8.88 16 13 C 0.51 8.54 7.68 -11.58 -0.09 8.45 16 14 O -0.52 -8.87 12.04 5.50 0.07 -8.81 16 15 C 0.49 9.37 7.75 -11.58 -0.09 9.28 16 16 O -0.53 -10.71 13.14 5.50 0.07 -10.64 16 17 N -0.66 -13.32 5.49 -60.73 -0.33 -13.65 16 18 C 0.12 2.71 5.38 -4.04 -0.02 2.68 16 19 C 0.03 0.77 1.81 -155.66 -0.28 0.48 16 20 C -0.48 -12.14 9.05 -34.44 -0.31 -12.45 16 21 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 22 C 0.07 1.72 5.33 -17.82 -0.09 1.62 16 23 N -0.88 -22.84 10.29 55.43 0.57 -22.27 16 24 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C -0.19 -4.07 9.88 -26.73 -0.26 -4.33 16 29 C -0.21 -4.22 9.90 -26.73 -0.26 -4.48 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 33 H 0.37 2.64 9.03 45.56 0.41 3.05 16 34 H 0.09 1.14 7.16 -51.93 -0.37 0.76 16 35 H 0.10 1.26 6.40 -51.93 -0.33 0.92 16 36 H 0.11 1.02 6.84 -51.93 -0.36 0.66 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.16 2.41 4.35 -54.71 -0.24 2.17 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.41 8.05 7.97 -40.82 -0.33 7.72 16 43 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 44 H 0.16 3.94 4.71 -51.93 -0.24 3.69 16 45 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 46 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 47 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 48 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 49 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -27.50 387.09 -7.93 -35.43 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -6.80 Total: 16.96 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.99 Total: 2.30 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.26 Total: -44.80 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.69 Total: -30.58 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.50 -7.93 -35.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256791923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.160 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds