Wall clock time and date at job start Tue Mar 31 2020 23:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47449 * 2 1 4 4 O 1.42903 * 109.47355 * 239.99556 * 2 1 3 5 5 C 1.53004 * 109.46979 * 119.99538 * 2 1 3 6 6 C 1.53005 * 109.46888 * 182.85104 * 5 2 1 7 7 H 1.08997 * 109.67593 * 298.74465 * 6 5 2 8 8 C 1.53290 * 109.68408 * 59.30048 * 6 5 2 9 9 O 1.42963 * 109.22367 * 172.02480 * 8 6 5 10 10 C 1.42962 * 114.16621 * 297.41728 * 9 8 6 11 11 C 1.53302 * 109.21906 * 62.58136 * 10 9 8 12 12 N 1.47144 * 108.38465 * 307.69440 * 11 10 9 13 13 C 1.34782 * 120.98621 * 230.51477 * 12 11 10 14 14 O 1.21342 * 120.00094 * 174.70813 * 13 12 11 15 15 C 1.49454 * 119.99555 * 354.70563 * 13 12 11 16 16 O 1.21346 * 119.99953 * 352.63940 * 15 13 12 17 17 N 1.34775 * 119.99874 * 172.64423 * 15 13 12 18 18 C 1.46496 * 119.99857 * 185.01981 * 17 15 13 19 19 C 1.53009 * 109.47023 * 184.95252 * 18 17 15 20 20 C 1.50697 * 115.54744 * 278.37660 * 19 18 17 21 21 H 1.07997 * 119.99536 * 143.63963 * 20 19 18 22 22 C 1.37875 * 120.00135 * 323.63943 * 20 19 18 23 23 N 1.31518 * 120.00090 * 355.92373 * 22 20 19 24 24 Si 1.86792 * 120.00097 * 175.92476 * 22 20 19 25 25 H 1.48502 * 109.47195 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47526 * 119.99792 * 24 22 20 27 27 H 1.48507 * 109.47321 * 240.00055 * 24 22 20 28 28 C 1.53003 * 117.49805 * 132.66657 * 19 18 17 29 29 C 1.52998 * 59.99961 * 252.51053 * 28 19 18 30 30 H 1.08997 * 109.47035 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47595 * 300.00247 * 1 2 3 32 32 H 1.09007 * 109.46891 * 60.00445 * 1 2 3 33 33 H 0.96700 * 114.00002 * 295.06626 * 4 2 1 34 34 H 1.08994 * 109.47086 * 302.84843 * 5 2 1 35 35 H 1.08994 * 109.46987 * 62.85459 * 5 2 1 36 36 H 1.09002 * 109.51598 * 291.94999 * 8 6 5 37 37 H 1.09002 * 109.51237 * 52.09552 * 8 6 5 38 38 H 1.09001 * 109.51589 * 302.65971 * 10 9 8 39 39 H 1.08997 * 109.55640 * 182.53041 * 10 9 8 40 40 H 1.09000 * 109.67670 * 187.97666 * 11 10 9 41 41 H 1.09000 * 109.71041 * 67.44080 * 11 10 9 42 42 H 0.97001 * 119.99847 * 5.01423 * 17 15 13 43 43 H 1.08999 * 109.47080 * 304.94609 * 18 17 15 44 44 H 1.09000 * 109.47643 * 64.94942 * 18 17 15 45 45 H 0.96994 * 120.00307 * 185.00483 * 23 22 20 46 46 H 1.09001 * 117.49759 * 0.02562 * 28 19 18 47 47 H 1.08994 * 117.49625 * 145.01939 * 28 19 18 48 48 H 1.09000 * 117.50318 * 252.50942 * 29 28 19 49 49 H 1.09000 * 117.51361 * 107.48152 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 3.5683 -0.6593 1.2857 7 1 3.9769 -1.1616 0.4089 8 6 4.0255 0.8037 1.3035 9 8 5.4372 0.8530 1.5244 10 6 5.8518 0.3158 2.7827 11 6 5.4880 -1.1723 2.8406 12 7 4.0619 -1.3147 2.5073 13 6 3.2322 -2.0249 3.2972 14 8 2.0427 -2.0517 3.0590 15 6 3.7774 -2.7794 4.4664 16 8 4.9771 -2.8635 4.6283 17 7 2.9367 -3.3665 5.3409 18 6 3.4656 -4.0116 6.5452 19 6 2.3253 -4.7012 7.2971 20 6 1.4931 -3.8060 8.1785 21 1 0.4302 -3.9743 8.2689 22 6 2.0887 -2.7722 8.8695 23 7 3.3937 -2.6161 8.8232 24 14 1.0420 -1.5933 9.8715 25 1 -0.3867 -1.9826 9.7598 26 1 1.4605 -1.6475 11.2953 27 1 1.2200 -0.2122 9.3554 28 6 2.5565 -6.1389 7.7668 29 6 1.6143 -5.8594 6.5942 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7846 -1.6145 -1.1957 34 1 1.6355 -0.2376 2.1385 35 1 1.7190 -1.7625 1.2242 36 1 3.7902 1.2704 0.3470 37 1 3.5128 1.3357 2.1048 38 1 5.3457 0.8460 3.5895 39 1 6.9301 0.4315 2.8913 40 1 5.6704 -1.5559 3.8445 41 1 6.0904 -1.7263 2.1208 42 1 1.9813 -3.3619 5.1730 43 1 4.2139 -4.7518 6.2620 44 1 3.9232 -3.2603 7.1888 45 1 3.8202 -1.9347 9.3660 46 1 3.5212 -6.5933 7.5405 47 1 2.1068 -6.4374 8.7137 48 1 0.5447 -5.9741 6.7696 49 1 1.9587 -6.1298 5.5960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256791923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:19 Heat of formation + Delta-G solvation = -129.486088 kcal Electronic energy + Delta-G solvation = -31490.980046 eV Core-core repulsion = 27226.569755 eV Total energy + Delta-G solvation = -4264.410291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28312 -40.46283 -39.26610 -38.71445 -38.43823 -36.16680 -34.77029 -34.28811 -33.99921 -31.60834 -29.76688 -28.34091 -27.52268 -27.30364 -25.37320 -24.21731 -23.08482 -22.56017 -22.18856 -21.25613 -20.68763 -19.01370 -18.10582 -18.06253 -17.64388 -17.44157 -17.04331 -16.90656 -16.71873 -16.52703 -16.10872 -16.05146 -15.66583 -15.59560 -15.37772 -14.95266 -14.56528 -14.46978 -14.24487 -13.97687 -13.68400 -13.60072 -13.37204 -13.16173 -12.96301 -12.92085 -12.63348 -12.55672 -12.32306 -12.21116 -12.13407 -12.07319 -11.99388 -11.50690 -11.34528 -11.31494 -11.02051 -10.92852 -10.76743 -10.27442 -10.02433 -9.83451 -9.62550 -8.00326 -6.26074 0.35641 1.23832 1.39689 1.44959 1.53890 2.14600 2.38538 2.41544 2.76443 2.96772 3.34160 3.45825 3.60013 3.65892 3.73698 3.90079 3.98330 4.04964 4.11565 4.20064 4.21274 4.32520 4.45801 4.49600 4.55470 4.63283 4.68062 4.74414 4.76845 4.83853 4.89849 4.91414 4.92065 5.02181 5.07712 5.20343 5.23059 5.27715 5.40147 5.50220 5.53902 5.61351 5.89492 6.02759 6.10231 6.32544 6.39534 6.69592 6.80178 6.81322 7.05917 7.40511 8.86291 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003284 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.991288 B = 8523.580809 C = 8821.155044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 H 0.105 0.895 4 O -0.574 6.574 5 C -0.132 4.132 6 C 0.113 3.887 7 H 0.094 0.906 8 C 0.052 3.948 9 O -0.388 6.388 10 C 0.049 3.951 11 C 0.035 3.965 12 N -0.582 5.582 13 C 0.513 3.487 14 O -0.526 6.526 15 C 0.488 3.512 16 O -0.546 6.546 17 N -0.663 5.663 18 C 0.132 3.868 19 C 0.006 3.994 20 C -0.497 4.497 21 H 0.058 0.942 22 C 0.028 3.972 23 N -0.902 5.902 24 Si 0.954 3.046 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.284 1.284 28 C -0.191 4.191 29 C -0.185 4.185 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.386 0.614 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.409 0.591 43 H 0.030 0.970 44 H 0.128 0.872 45 H 0.264 0.736 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 6.004 -16.064 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.040 3.960 3 H 0.123 0.877 4 O -0.382 6.382 5 C -0.170 4.170 6 C 0.011 3.989 7 H 0.112 0.888 8 C -0.025 4.025 9 O -0.307 6.307 10 C -0.028 4.028 11 C -0.086 4.086 12 N -0.316 5.316 13 C 0.296 3.704 14 O -0.404 6.404 15 C 0.269 3.731 16 O -0.428 6.428 17 N -0.311 5.311 18 C 0.010 3.990 19 C 0.005 3.995 20 C -0.534 4.534 21 H 0.076 0.924 22 C -0.171 4.171 23 N -0.541 5.541 24 Si 0.780 3.220 25 H -0.192 1.192 26 H -0.206 1.206 27 H -0.210 1.210 28 C -0.230 4.230 29 C -0.222 4.222 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.146 0.854 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.103 0.897 42 H 0.244 0.756 43 H 0.049 0.951 44 H 0.144 0.856 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.743 6.761 -16.270 17.635 hybrid contribution -1.166 -0.451 1.227 1.752 sum -0.423 6.311 -15.043 16.319 Atomic orbital electron populations 1.22392 0.95576 1.02821 1.02818 1.22103 0.93698 0.96679 0.83492 0.87706 1.86523 1.80908 1.27803 1.42960 1.22704 0.92203 1.03212 0.98854 1.22209 0.96248 0.94523 0.85877 0.88794 1.23221 0.81608 0.94143 1.03567 1.87946 1.22905 1.82327 1.37486 1.23138 1.02621 0.91460 0.85570 1.23577 0.79205 0.98588 1.07261 1.48110 1.10443 1.49185 1.23829 1.20084 0.86290 0.80459 0.83549 1.90754 1.15329 1.63058 1.71213 1.20407 0.86778 0.81476 0.84392 1.90416 1.15210 1.61162 1.76000 1.45917 1.11060 1.52491 1.21625 1.21787 0.94918 0.98693 0.83601 1.19257 0.95851 0.86911 0.97488 1.20868 0.94093 1.12094 1.26359 0.92368 1.25599 0.95902 0.98192 0.97383 1.69452 1.09553 1.35321 1.39782 0.85563 0.79320 0.78693 0.78436 1.19231 1.20564 1.21025 1.22976 0.99560 1.02630 0.97832 1.22869 0.97593 1.06097 0.95659 0.92324 0.91611 0.91205 0.76496 0.91177 0.89893 0.85448 0.92690 0.93117 0.85104 0.84757 0.89702 0.75585 0.95127 0.85579 0.92509 0.90402 0.90306 0.89692 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 9.56 71.98 0.69 -2.10 16 2 C 0.10 1.67 3.34 30.59 0.10 1.77 16 3 H 0.11 1.57 6.47 -2.39 -0.02 1.55 16 4 O -0.57 -9.86 12.82 -148.98 -1.91 -11.77 16 5 C -0.13 -2.86 2.83 30.60 0.09 -2.77 16 6 C 0.11 2.55 3.08 44.97 0.14 2.69 16 7 H 0.09 2.06 7.81 -2.39 -0.02 2.05 16 8 C 0.05 1.05 5.66 72.08 0.41 1.45 16 9 O -0.39 -8.87 10.74 -148.98 -1.60 -10.47 16 10 C 0.05 1.08 6.99 72.08 0.50 1.58 16 11 C 0.04 0.91 6.20 86.36 0.54 1.44 16 12 N -0.58 -16.13 3.02 -795.08 -2.40 -18.53 16 13 C 0.51 17.06 7.68 87.27 0.67 17.73 16 14 O -0.53 -17.89 12.04 -3.22 -0.04 -17.93 16 15 C 0.49 18.81 7.75 87.27 0.68 19.48 16 16 O -0.55 -22.31 13.14 -3.23 -0.04 -22.35 16 17 N -0.66 -27.15 5.49 -464.41 -2.55 -29.70 16 18 C 0.13 6.08 5.38 86.38 0.47 6.54 16 19 C 0.01 0.26 1.81 -52.92 -0.10 0.16 16 20 C -0.50 -25.04 9.05 25.60 0.23 -24.81 16 21 H 0.06 2.93 7.82 -2.91 -0.02 2.90 16 22 C 0.03 1.44 5.33 84.65 0.45 1.90 16 23 N -0.90 -47.59 10.29 21.45 0.22 -47.37 16 24 Si 0.95 40.98 29.54 68.60 2.03 43.00 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 28 C -0.19 -8.00 9.88 30.59 0.30 -7.70 16 29 C -0.18 -7.23 9.90 30.59 0.30 -6.93 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.39 4.69 9.03 -74.06 -0.67 4.02 16 34 H 0.07 1.78 7.16 -2.39 -0.02 1.76 16 35 H 0.08 2.07 6.40 -2.39 -0.02 2.05 16 36 H 0.13 2.05 6.84 -2.39 -0.02 2.03 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.14 4.18 4.35 -46.39 -0.20 3.98 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 42 H 0.41 16.30 7.97 -92.71 -0.74 15.56 16 43 H 0.03 1.40 7.89 -2.39 -0.02 1.38 16 44 H 0.13 6.66 4.71 -2.39 -0.01 6.65 16 45 H 0.26 13.41 8.32 -92.71 -0.77 12.64 16 46 H 0.08 3.07 8.07 -2.39 -0.02 3.05 16 47 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 48 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 49 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -57.99 387.09 -1.44 -59.43 By element: Atomic # 1 Polarization: 45.87 SS G_CDS: -0.61 Total: 45.26 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 5.47 Total: 10.43 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -4.73 Total: -95.60 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -3.59 Total: -62.52 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -57.99 -1.44 -59.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256791923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.055 kcal (2) G-P(sol) polarization free energy of solvation -57.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds