Wall clock time and date at job start Tue Mar 31 2020 23:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99378 * 2 1 4 4 C 1.53002 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.51471 * 54.89172 * 4 3 2 6 6 C 1.53289 * 109.51601 * 174.99795 * 4 3 2 7 7 N 1.47154 * 108.41709 * 172.25375 * 6 4 3 8 8 C 1.34777 * 120.98145 * 129.46645 * 7 6 4 9 9 O 1.21351 * 119.99920 * 352.02811 * 8 7 6 10 10 C 1.49449 * 120.00127 * 172.02867 * 8 7 6 11 11 O 1.21355 * 119.99601 * 353.68164 * 10 8 7 12 12 N 1.34778 * 120.00208 * 173.68939 * 10 8 7 13 13 C 1.46501 * 120.00127 * 184.53414 * 12 10 8 14 14 C 1.53000 * 109.47108 * 175.09882 * 13 12 10 15 15 C 1.50698 * 115.54733 * 65.12225 * 14 13 12 16 16 H 1.07993 * 120.00093 * 271.82634 * 15 14 13 17 17 C 1.37881 * 119.99613 * 91.83249 * 15 14 13 18 18 N 1.31512 * 120.00305 * 4.06433 * 17 15 14 19 19 Si 1.86803 * 119.99735 * 184.06682 * 17 15 14 20 20 H 1.48496 * 109.47413 * 59.99697 * 19 17 15 21 21 H 1.48499 * 109.47217 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46751 * 299.99646 * 19 17 15 23 23 C 1.52993 * 117.49594 * 279.45351 * 14 13 12 24 24 C 1.53000 * 117.49616 * 210.79391 * 14 13 12 25 25 C 1.47168 * 118.02662 * 309.53149 * 7 6 4 26 26 C 1.53293 * 108.41342 * 50.46950 * 25 7 6 27 27 H 1.08999 * 109.51637 * 67.64206 * 26 25 7 28 28 C 1.53001 * 109.55326 * 187.76951 * 26 25 7 29 29 O 1.42961 * 109.22269 * 307.71608 * 26 25 7 30 30 H 1.09002 * 109.46665 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47621 * 299.99912 * 1 2 3 32 32 H 1.09001 * 109.47269 * 60.00095 * 1 2 3 33 33 H 1.08999 * 109.47660 * 60.00190 * 3 2 1 34 34 H 1.09001 * 109.47373 * 299.99740 * 3 2 1 35 35 H 1.08997 * 109.68055 * 291.99802 * 6 4 3 36 36 H 1.09007 * 109.68379 * 52.51638 * 6 4 3 37 37 H 0.96995 * 119.99352 * 4.52877 * 12 10 8 38 38 H 1.08997 * 109.47092 * 295.10136 * 13 12 10 39 39 H 1.09006 * 109.47223 * 55.09600 * 13 12 10 40 40 H 0.96998 * 119.99957 * 185.01213 * 18 17 15 41 41 H 1.08997 * 117.50444 * 0.02562 * 23 14 13 42 42 H 1.09002 * 117.49601 * 145.02562 * 23 14 13 43 43 H 1.09004 * 117.49512 * 214.98046 * 24 14 13 44 44 H 1.08997 * 117.50118 * 0.02562 * 24 14 13 45 45 H 1.08996 * 109.64811 * 290.74545 * 25 7 6 46 46 H 1.09006 * 109.71271 * 170.22910 * 25 7 6 47 47 H 1.08998 * 109.47091 * 179.77499 * 28 26 25 48 48 H 1.09000 * 109.47126 * 299.76873 * 28 26 25 49 49 H 1.09002 * 109.47190 * 59.77165 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8514 0.5673 -0.8413 6 6 4.1593 2.5793 -0.1266 7 7 5.6135 2.4568 0.0623 8 6 6.4759 2.9981 -0.8207 9 8 6.0638 3.4698 -1.8601 10 6 7.9397 3.0173 -0.5199 11 8 8.3409 2.6514 0.5654 12 7 8.8141 3.4412 -1.4538 13 6 10.2544 3.3671 -1.1961 14 6 11.0196 3.7921 -2.4510 15 6 10.8397 5.2295 -2.8662 16 1 10.0258 5.5048 -3.5204 17 6 11.7145 6.1931 -2.4109 18 7 12.7516 5.8473 -1.6800 19 14 11.4264 7.9901 -2.8323 20 1 10.1095 8.4192 -2.2968 21 1 12.5007 8.8185 -2.2283 22 1 11.4404 8.1609 -4.3074 23 6 11.1902 2.7523 -3.5603 24 6 12.3878 3.1521 -2.6947 25 6 6.0981 1.7244 1.2433 26 6 5.3797 0.3715 1.3025 27 1 5.7024 -0.2490 0.4665 28 6 5.7169 -0.3301 2.6196 29 8 3.9683 0.5842 1.2224 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9507 2.9868 -1.1158 36 1 3.7442 3.2376 0.6367 37 1 8.4898 3.7954 -2.2965 38 1 10.5107 4.0322 -0.3715 39 1 10.5246 2.3438 -0.9349 40 1 13.3258 6.5299 -1.2991 41 1 10.7570 1.7656 -3.3964 42 1 11.1729 3.1081 -4.5905 43 1 13.1577 3.7708 -3.1558 44 1 12.7426 2.4280 -1.9613 45 1 5.8787 2.2963 2.1448 46 1 7.1735 1.5658 1.1618 47 1 5.2022 -1.2900 2.6621 48 1 6.7931 -0.4920 2.6800 49 1 5.3955 0.2917 3.4552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261227344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:06 Heat of formation + Delta-G solvation = -116.792784 kcal Electronic energy + Delta-G solvation = -30466.693476 eV Core-core repulsion = 26202.833608 eV Total energy + Delta-G solvation = -4263.859868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92535 -39.40243 -38.18389 -37.81437 -36.83695 -35.04073 -33.64927 -33.36385 -31.97383 -30.27734 -27.94841 -27.14374 -26.47170 -25.80557 -25.23054 -22.89431 -22.20878 -21.24007 -21.00480 -19.89881 -19.24203 -17.65301 -17.35302 -16.94428 -16.71504 -16.19720 -16.00975 -15.78700 -15.69128 -15.35366 -14.89772 -14.81321 -14.68038 -14.28548 -13.96230 -13.76162 -13.47961 -13.07779 -13.04560 -12.78882 -12.69048 -12.41192 -12.27274 -11.94636 -11.92861 -11.72942 -11.61255 -11.25650 -11.18694 -11.03979 -10.94498 -10.81052 -10.57135 -10.29605 -10.24962 -10.03323 -9.59957 -9.18902 -9.09366 -8.74582 -8.57652 -8.41726 -8.22039 -6.12537 -4.22309 1.61427 2.34579 3.26240 3.26440 3.31572 3.34461 3.38188 3.44001 3.68389 4.33147 4.50463 4.57547 4.63849 4.73615 4.78632 4.88575 4.96091 5.00038 5.04966 5.10435 5.13845 5.17394 5.25959 5.31341 5.32893 5.42371 5.56129 5.63546 5.70368 5.87079 5.90240 6.00561 6.11860 6.24630 6.32854 6.43492 6.61029 6.71600 6.76653 6.91389 7.00013 7.00400 7.07554 7.28197 7.50884 7.64326 7.76831 8.00938 8.27372 8.39228 8.79954 9.45572 10.94439 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.002449 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.145483 B =11429.344700 C =12029.364296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.072 3.928 4 C 0.083 3.917 5 H 0.072 0.928 6 C 0.082 3.918 7 N -0.592 5.592 8 C 0.512 3.488 9 O -0.517 6.517 10 C 0.498 3.502 11 O -0.531 6.531 12 N -0.662 5.662 13 C 0.158 3.842 14 C 0.016 3.984 15 C -0.501 4.501 16 H 0.061 0.939 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.212 4.212 24 C -0.132 4.132 25 C 0.046 3.954 26 C 0.073 3.927 27 H 0.062 0.938 28 C -0.140 4.140 29 O -0.368 6.368 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.415 0.585 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.151 0.849 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.957 -10.775 5.871 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.005 4.005 4 C 0.024 3.976 5 H 0.090 0.910 6 C -0.041 4.041 7 N -0.326 5.326 8 C 0.296 3.704 9 O -0.392 6.392 10 C 0.278 3.722 11 O -0.411 6.411 12 N -0.310 5.310 13 C 0.036 3.964 14 C 0.015 3.985 15 C -0.538 4.538 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.249 4.249 24 C -0.170 4.170 25 C -0.075 4.075 26 C 0.014 3.986 27 H 0.080 0.920 28 C -0.198 4.198 29 O -0.287 6.287 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.251 0.749 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.167 0.833 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.640 -10.899 6.229 22.473 hybrid contribution -0.391 1.580 -0.652 1.753 sum -19.031 -9.320 5.577 21.912 Atomic orbital electron populations 1.22758 0.80884 1.02895 0.99988 1.87941 1.19676 1.27069 1.95410 1.22435 0.91126 0.85620 1.01323 1.22362 0.93080 0.93365 0.88799 0.90967 1.22228 0.80098 0.97086 1.04664 1.47877 1.05531 1.54043 1.25181 1.20478 0.87959 0.78696 0.83305 1.90747 1.79173 1.45352 1.23950 1.19857 0.86581 0.80395 0.85383 1.90468 1.79070 1.48863 1.22742 1.45947 1.07618 1.58617 1.18865 1.21285 0.76169 0.99041 0.99898 1.19039 0.95953 0.92763 0.90741 1.20333 1.12762 0.89839 1.30876 0.92124 1.24981 0.94118 0.98914 0.95013 1.69990 1.14436 1.33394 1.33309 0.86690 0.77934 0.84820 0.78789 1.20141 1.21246 1.20134 1.23074 1.06029 0.98556 0.97247 1.22456 0.92253 1.01241 1.01051 1.23575 1.04815 0.91819 0.87296 1.22593 0.81016 0.95446 0.99511 0.92003 1.21691 1.02114 1.00691 0.95279 1.87993 1.22600 1.81304 1.36821 0.89531 0.93968 0.94037 0.92038 0.91371 0.87608 0.90076 0.74851 0.90800 0.93283 0.92776 0.91764 0.90219 0.88906 0.91821 0.90522 0.83265 0.91513 0.90394 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.97 10.67 -39.66 -0.42 -4.39 16 3 C 0.07 0.64 5.61 37.16 0.21 0.85 16 4 C 0.08 0.89 3.06 -26.58 -0.08 0.81 16 5 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 6 C 0.08 0.91 5.94 -3.54 -0.02 0.89 16 7 N -0.59 -8.08 3.02 -172.77 -0.52 -8.61 16 8 C 0.51 8.40 7.75 -11.59 -0.09 8.31 16 9 O -0.52 -9.31 15.97 5.50 0.09 -9.23 16 10 C 0.50 8.95 7.74 -11.59 -0.09 8.86 16 11 O -0.53 -9.90 13.21 5.49 0.07 -9.82 16 12 N -0.66 -12.72 5.47 -60.73 -0.33 -13.05 16 13 C 0.16 3.36 5.51 -4.04 -0.02 3.34 16 14 C 0.02 0.36 1.59 -155.66 -0.25 0.11 16 15 C -0.50 -12.78 8.63 -34.44 -0.30 -13.08 16 16 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 17 C 0.07 1.93 5.41 -17.82 -0.10 1.84 16 18 N -0.88 -23.68 12.08 55.43 0.67 -23.01 16 19 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.21 -4.35 9.96 -26.70 -0.27 -4.62 16 24 C -0.13 -2.95 8.89 -26.69 -0.24 -3.18 16 25 C 0.05 0.58 5.42 -3.53 -0.02 0.56 16 26 C 0.07 0.81 3.40 -26.58 -0.09 0.72 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 C -0.14 -1.26 9.57 37.16 0.36 -0.90 16 29 O -0.37 -4.42 10.00 -39.66 -0.40 -4.81 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.11 1.18 7.06 -51.93 -0.37 0.81 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.41 7.99 7.81 -40.82 -0.32 7.67 16 38 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.09 2.26 7.78 -51.93 -0.40 1.86 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.15 2.10 4.50 -53.95 -0.24 1.86 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -29.40 402.43 -7.75 -37.15 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.06 Total: 8.38 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 0.12 Total: 5.82 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.18 Total: -44.67 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.66 Total: -28.26 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.40 -7.75 -37.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.644 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds