Wall clock time and date at job start Tue Mar 31 2020 23:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99378 * 2 1 4 4 C 1.53002 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.51471 * 54.89172 * 4 3 2 6 6 C 1.53289 * 109.51601 * 174.99795 * 4 3 2 7 7 N 1.47154 * 108.41709 * 172.25375 * 6 4 3 8 8 C 1.34777 * 120.98145 * 129.46645 * 7 6 4 9 9 O 1.21351 * 119.99920 * 352.02811 * 8 7 6 10 10 C 1.49449 * 120.00127 * 172.02867 * 8 7 6 11 11 O 1.21355 * 119.99601 * 353.68164 * 10 8 7 12 12 N 1.34778 * 120.00208 * 173.68939 * 10 8 7 13 13 C 1.46501 * 120.00127 * 184.53414 * 12 10 8 14 14 C 1.53000 * 109.47108 * 175.09882 * 13 12 10 15 15 C 1.50698 * 115.54733 * 65.12225 * 14 13 12 16 16 H 1.07993 * 120.00093 * 271.82634 * 15 14 13 17 17 C 1.37881 * 119.99613 * 91.83249 * 15 14 13 18 18 N 1.31512 * 120.00305 * 4.06433 * 17 15 14 19 19 Si 1.86803 * 119.99735 * 184.06682 * 17 15 14 20 20 H 1.48496 * 109.47413 * 59.99697 * 19 17 15 21 21 H 1.48499 * 109.47217 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46751 * 299.99646 * 19 17 15 23 23 C 1.52993 * 117.49594 * 279.45351 * 14 13 12 24 24 C 1.53000 * 117.49616 * 210.79391 * 14 13 12 25 25 C 1.47168 * 118.02662 * 309.53149 * 7 6 4 26 26 C 1.53293 * 108.41342 * 50.46950 * 25 7 6 27 27 H 1.08999 * 109.51637 * 67.64206 * 26 25 7 28 28 C 1.53001 * 109.55326 * 187.76951 * 26 25 7 29 29 O 1.42961 * 109.22269 * 307.71608 * 26 25 7 30 30 H 1.09002 * 109.46665 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47621 * 299.99912 * 1 2 3 32 32 H 1.09001 * 109.47269 * 60.00095 * 1 2 3 33 33 H 1.08999 * 109.47660 * 60.00190 * 3 2 1 34 34 H 1.09001 * 109.47373 * 299.99740 * 3 2 1 35 35 H 1.08997 * 109.68055 * 291.99802 * 6 4 3 36 36 H 1.09007 * 109.68379 * 52.51638 * 6 4 3 37 37 H 0.96995 * 119.99352 * 4.52877 * 12 10 8 38 38 H 1.08997 * 109.47092 * 295.10136 * 13 12 10 39 39 H 1.09006 * 109.47223 * 55.09600 * 13 12 10 40 40 H 0.96998 * 119.99957 * 185.01213 * 18 17 15 41 41 H 1.08997 * 117.50444 * 0.02562 * 23 14 13 42 42 H 1.09002 * 117.49601 * 145.02562 * 23 14 13 43 43 H 1.09004 * 117.49512 * 214.98046 * 24 14 13 44 44 H 1.08997 * 117.50118 * 0.02562 * 24 14 13 45 45 H 1.08996 * 109.64811 * 290.74545 * 25 7 6 46 46 H 1.09006 * 109.71271 * 170.22910 * 25 7 6 47 47 H 1.08998 * 109.47091 * 179.77499 * 28 26 25 48 48 H 1.09000 * 109.47126 * 299.76873 * 28 26 25 49 49 H 1.09002 * 109.47190 * 59.77165 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8514 0.5673 -0.8413 6 6 4.1593 2.5793 -0.1266 7 7 5.6135 2.4568 0.0623 8 6 6.4759 2.9981 -0.8207 9 8 6.0638 3.4698 -1.8601 10 6 7.9397 3.0173 -0.5199 11 8 8.3409 2.6514 0.5654 12 7 8.8141 3.4412 -1.4538 13 6 10.2544 3.3671 -1.1961 14 6 11.0196 3.7921 -2.4510 15 6 10.8397 5.2295 -2.8662 16 1 10.0258 5.5048 -3.5204 17 6 11.7145 6.1931 -2.4109 18 7 12.7516 5.8473 -1.6800 19 14 11.4264 7.9901 -2.8323 20 1 10.1095 8.4192 -2.2968 21 1 12.5007 8.8185 -2.2283 22 1 11.4404 8.1609 -4.3074 23 6 11.1902 2.7523 -3.5603 24 6 12.3878 3.1521 -2.6947 25 6 6.0981 1.7244 1.2433 26 6 5.3797 0.3715 1.3025 27 1 5.7024 -0.2490 0.4665 28 6 5.7169 -0.3301 2.6196 29 8 3.9683 0.5842 1.2224 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9507 2.9868 -1.1158 36 1 3.7442 3.2376 0.6367 37 1 8.4898 3.7954 -2.2965 38 1 10.5107 4.0322 -0.3715 39 1 10.5246 2.3438 -0.9349 40 1 13.3258 6.5299 -1.2991 41 1 10.7570 1.7656 -3.3964 42 1 11.1729 3.1081 -4.5905 43 1 13.1577 3.7708 -3.1558 44 1 12.7426 2.4280 -1.9613 45 1 5.8787 2.2963 2.1448 46 1 7.1735 1.5658 1.1618 47 1 5.2022 -1.2900 2.6621 48 1 6.7931 -0.4920 2.6800 49 1 5.3955 0.2917 3.4552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261227344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:05 Heat of formation + Delta-G solvation = -136.555100 kcal Electronic energy + Delta-G solvation = -30467.550434 eV Core-core repulsion = 26202.833608 eV Total energy + Delta-G solvation = -4264.716827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14928 -40.53339 -39.45853 -38.62432 -38.48651 -36.21898 -34.94343 -34.41287 -33.92972 -31.13013 -29.07967 -28.29922 -27.60316 -27.25433 -26.41673 -24.08896 -23.08221 -22.87622 -22.06772 -21.48294 -20.77205 -19.00426 -18.41453 -17.94632 -17.89902 -17.54742 -17.25232 -16.93115 -16.68037 -16.49604 -16.17863 -16.13048 -15.90632 -15.66899 -15.36609 -14.94219 -14.52205 -14.46038 -14.35695 -13.98920 -13.73967 -13.49624 -13.37167 -13.16809 -12.98514 -12.97120 -12.80643 -12.64430 -12.44843 -12.40952 -12.36584 -12.01688 -12.00259 -11.80768 -11.39105 -11.25279 -11.02538 -10.65449 -10.50901 -10.42135 -10.08211 -9.98880 -9.78430 -8.11606 -6.24926 0.25136 1.13459 1.42097 1.43748 1.49895 2.02416 2.32275 2.42081 2.51384 2.73519 3.15375 3.23622 3.57147 3.64579 3.75394 3.90082 3.93346 4.05322 4.18930 4.23018 4.28310 4.40354 4.43733 4.48861 4.52512 4.56393 4.59045 4.60957 4.67246 4.73671 4.78809 4.88348 4.90622 4.91762 5.00452 5.03103 5.03534 5.28032 5.30750 5.42022 5.54521 5.71864 5.75847 5.80360 6.07824 6.20467 6.24094 6.35313 6.61667 6.81704 6.91910 7.44512 8.94572 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.002449 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.145483 B =11429.344700 C =12029.364296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.073 3.927 4 C 0.084 3.916 5 H 0.061 0.939 6 C 0.082 3.918 7 N -0.585 5.585 8 C 0.515 3.485 9 O -0.537 6.537 10 C 0.498 3.502 11 O -0.538 6.538 12 N -0.666 5.666 13 C 0.175 3.825 14 C -0.006 4.006 15 C -0.509 4.509 16 H 0.056 0.944 17 C 0.029 3.971 18 N -0.901 5.901 19 Si 0.944 3.056 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.184 4.184 24 C -0.138 4.138 25 C 0.048 3.952 26 C 0.075 3.925 27 H 0.057 0.943 28 C -0.136 4.136 29 O -0.377 6.377 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.415 0.585 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.260 0.740 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.929 -11.344 6.135 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.003 4.003 4 C 0.025 3.975 5 H 0.079 0.921 6 C -0.040 4.040 7 N -0.318 5.318 8 C 0.298 3.702 9 O -0.414 6.414 10 C 0.279 3.721 11 O -0.419 6.419 12 N -0.315 5.315 13 C 0.052 3.948 14 C -0.007 4.007 15 C -0.546 4.546 16 H 0.074 0.926 17 C -0.173 4.173 18 N -0.539 5.539 19 Si 0.770 3.230 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.221 4.221 24 C -0.177 4.177 25 C -0.074 4.074 26 C 0.017 3.983 27 H 0.075 0.925 28 C -0.194 4.194 29 O -0.296 6.296 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.251 0.749 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.153 0.847 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.649 -11.488 6.511 24.510 hybrid contribution 0.150 1.692 -0.700 1.837 sum -20.499 -9.796 5.811 23.451 Atomic orbital electron populations 1.22936 0.79145 1.03842 1.01066 1.87888 1.21658 1.27930 1.95662 1.22485 0.89546 0.85505 1.02802 1.22410 0.94547 0.92531 0.88004 0.92142 1.22430 0.78233 0.97915 1.05454 1.47982 1.06487 1.52733 1.24623 1.20088 0.87300 0.79228 0.83612 1.90739 1.79167 1.46741 1.24795 1.20174 0.87370 0.79616 0.84899 1.90486 1.79627 1.48813 1.22939 1.45846 1.06984 1.59412 1.19283 1.20898 0.77257 0.98729 0.97960 1.19094 0.96792 0.92409 0.92413 1.20615 1.12217 0.91456 1.30336 0.92560 1.25618 0.94173 1.02187 0.95274 1.70089 1.15177 1.34103 1.34485 0.85837 0.77545 0.81002 0.78577 1.20138 1.21256 1.19708 1.23046 1.03858 0.98870 0.96374 1.22359 0.91835 1.01433 1.02029 1.23571 1.04135 0.92664 0.86988 1.22617 0.80675 0.94511 1.00531 0.92547 1.21696 1.02797 1.00733 0.94135 1.88000 1.22805 1.81388 1.37402 0.88781 0.93048 0.92752 0.91018 0.89361 0.87472 0.88181 0.74878 0.93884 0.92121 0.93069 0.89186 0.90286 0.91480 0.90526 0.89694 0.84700 0.90951 0.89509 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.84 10.67 -144.75 -1.54 -9.38 16 3 C 0.07 1.14 5.61 71.98 0.40 1.54 16 4 C 0.08 1.66 3.06 30.69 0.09 1.76 16 5 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 6 C 0.08 1.67 5.94 86.35 0.51 2.18 16 7 N -0.58 -15.27 3.02 -818.89 -2.47 -17.75 16 8 C 0.51 16.50 7.75 87.27 0.68 17.18 16 9 O -0.54 -18.98 15.97 -3.25 -0.05 -19.03 16 10 C 0.50 17.73 7.74 87.27 0.68 18.41 16 11 O -0.54 -19.86 13.21 -3.26 -0.04 -19.90 16 12 N -0.67 -25.48 5.47 -464.40 -2.54 -28.02 16 13 C 0.17 7.41 5.51 86.38 0.48 7.89 16 14 C -0.01 -0.29 1.59 -52.93 -0.08 -0.37 16 15 C -0.51 -26.09 8.63 25.60 0.22 -25.87 16 16 H 0.06 2.87 7.82 -2.91 -0.02 2.84 16 17 C 0.03 1.51 5.41 84.66 0.46 1.97 16 18 N -0.90 -49.54 12.08 21.45 0.26 -49.28 16 19 Si 0.94 42.43 29.54 68.60 2.03 44.46 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C -0.18 -7.33 9.96 30.62 0.30 -7.02 16 24 C -0.14 -6.16 8.89 30.62 0.27 -5.89 16 25 C 0.05 1.13 5.42 86.35 0.47 1.60 16 26 C 0.07 1.56 3.40 30.69 0.10 1.67 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 C -0.14 -2.21 9.57 71.98 0.69 -1.52 16 29 O -0.38 -8.41 10.00 -144.75 -1.45 -9.86 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 2.21 7.06 -2.39 -0.02 2.19 16 36 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.41 15.90 7.81 -92.71 -0.72 15.18 16 38 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 2.40 8.09 -2.38 -0.02 2.38 16 40 H 0.26 13.84 8.32 -92.71 -0.77 13.07 16 41 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.07 3.32 7.78 -2.38 -0.02 3.30 16 44 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.14 3.68 4.50 -34.45 -0.15 3.53 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -62.33 402.43 0.78 -61.54 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.08 Total: 32.18 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 6.52 Total: 15.05 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -4.76 Total: -95.05 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -3.09 Total: -58.18 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -62.33 0.78 -61.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.011 kcal (2) G-P(sol) polarization free energy of solvation -62.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds