Wall clock time and date at job start Tue Mar 31 2020 23:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00058 * 2 1 4 4 O 1.20822 * 119.99886 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99869 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.64391 * 321.71259 * 5 3 2 7 7 C 1.55157 * 110.72049 * 198.37192 * 5 3 2 8 8 C 1.55127 * 101.48586 * 205.97113 * 7 5 3 9 9 N 1.47421 * 104.72332 * 37.29841 * 8 7 5 10 10 C 1.34774 * 125.64916 * 155.82059 * 9 8 7 11 11 O 1.21351 * 119.99970 * 179.68803 * 10 9 8 12 12 C 1.49448 * 120.00342 * 359.68185 * 10 9 8 13 13 O 1.21350 * 119.99710 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00342 * 180.02562 * 12 10 9 15 15 C 1.46501 * 120.00088 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47343 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46947 * 59.99565 * 16 15 14 18 18 C 1.53009 * 109.46853 * 299.99966 * 16 15 14 19 19 C 1.50694 * 109.47305 * 180.02562 * 16 15 14 20 20 H 1.08003 * 120.00006 * 359.97438 * 19 16 15 21 21 C 1.37870 * 120.00205 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00166 * 359.97438 * 21 19 16 23 23 Si 1.86806 * 120.00342 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47244 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47035 * 299.99972 * 23 21 19 26 26 H 1.48499 * 109.46825 * 59.99909 * 23 21 19 27 27 C 1.47020 * 108.70396 * 335.54801 * 9 8 7 28 28 H 1.08998 * 109.88738 * 241.87571 * 27 9 8 29 29 C 1.53000 * 109.88272 * 120.86218 * 27 9 8 30 30 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46695 * 299.99302 * 1 2 3 32 32 H 1.08988 * 109.47372 * 59.99657 * 1 2 3 33 33 H 1.08999 * 111.00146 * 324.21324 * 7 5 3 34 34 H 1.08999 * 111.00522 * 88.02542 * 7 5 3 35 35 H 1.08997 * 110.50074 * 278.45368 * 8 7 5 36 36 H 1.09001 * 110.34025 * 156.05723 * 8 7 5 37 37 H 0.97000 * 119.99697 * 0.02562 * 14 12 10 38 38 H 1.09001 * 109.47016 * 60.00076 * 15 14 12 39 39 H 1.09005 * 109.47024 * 300.00607 * 15 14 12 40 40 H 1.09003 * 109.46388 * 179.97438 * 17 16 15 41 41 H 1.08993 * 109.47486 * 300.00278 * 17 16 15 42 42 H 1.08995 * 109.46791 * 60.00841 * 17 16 15 43 43 H 1.09001 * 109.46953 * 300.00132 * 18 16 15 44 44 H 1.08998 * 109.46518 * 59.99751 * 18 16 15 45 45 H 1.08994 * 109.46925 * 179.97438 * 18 16 15 46 46 H 0.96997 * 120.00850 * 180.02562 * 22 21 19 47 47 H 1.08991 * 109.47425 * 56.62610 * 29 27 9 48 48 H 1.08997 * 109.47327 * 176.63451 * 29 27 9 49 49 H 1.09000 * 109.46914 * 296.62338 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9922 0.4953 0.6311 7 6 4.0427 2.6788 0.4569 8 6 5.4268 2.7766 -0.2368 9 7 5.2382 2.1204 -1.5434 10 6 5.9748 2.3461 -2.6492 11 8 5.7327 1.7417 -3.6733 12 6 7.0897 3.3408 -2.6144 13 8 7.3320 3.9449 -1.5903 14 7 7.8259 3.5668 -3.7205 15 6 8.9192 4.5414 -3.6861 16 6 9.5878 4.6065 -5.0608 17 6 8.5579 5.0319 -6.1092 18 6 10.1446 3.2281 -5.4228 19 6 10.7127 5.6086 -5.0253 20 1 10.9289 6.1457 -4.1136 21 6 11.4660 5.8397 -6.1567 22 7 11.2031 5.1854 -7.2668 23 14 12.8600 7.0825 -6.1130 24 1 13.5098 7.1446 -7.4468 25 1 12.3196 8.4204 -5.7623 26 1 13.8592 6.6698 -5.0949 27 6 4.1178 1.1743 -1.4385 28 1 4.4693 0.1606 -1.6306 29 6 3.0269 1.5461 -2.4448 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8898 33 1 3.3671 3.4561 0.0998 34 1 4.1464 2.7221 1.5411 35 1 6.1837 2.2514 0.3458 36 1 5.7090 3.8205 -0.3738 37 1 7.6319 3.0841 -4.5392 38 1 9.6526 4.2385 -2.9389 39 1 8.5224 5.5235 -3.4285 40 1 9.0344 5.0787 -7.0884 41 1 7.7445 4.3068 -6.1347 42 1 8.1613 6.0139 -5.8513 43 1 10.8782 2.9249 -4.6759 44 1 9.3311 2.5030 -5.4483 45 1 10.6205 3.2743 -6.4023 46 1 11.7332 5.3476 -8.0627 47 1 3.4506 1.5670 -3.4488 48 1 2.2271 0.8068 -2.4033 49 1 2.6258 2.5293 -2.1990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261416065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:34 Heat of formation + Delta-G solvation = -149.640056 kcal Electronic energy + Delta-G solvation = -30576.358209 eV Core-core repulsion = 26311.073976 eV Total energy + Delta-G solvation = -4265.284233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47920 -40.44262 -38.86091 -37.67078 -36.74149 -36.44475 -33.46877 -32.40204 -31.56286 -30.89768 -28.56012 -26.70747 -26.28775 -25.73001 -25.34188 -24.36006 -22.95039 -22.10630 -20.29691 -19.61566 -18.86162 -18.09776 -17.68979 -17.11051 -16.85692 -16.75827 -16.02090 -15.87259 -15.29686 -15.17378 -14.75145 -14.42474 -14.11632 -14.01956 -13.65793 -13.48410 -13.39539 -13.00550 -12.91248 -12.80339 -12.52874 -12.45121 -12.37925 -12.23064 -11.99984 -11.42564 -11.41037 -11.32299 -11.20421 -11.19604 -11.00789 -10.86746 -10.79173 -10.74448 -10.40504 -10.20725 -9.66041 -9.50896 -9.20277 -8.96987 -8.81672 -8.60380 -8.37491 -6.03008 -4.13996 1.61752 1.71300 2.12212 2.48296 3.29314 3.34105 3.36864 3.42329 3.63304 3.92208 4.05236 4.33106 4.38267 4.62646 4.69073 4.70758 4.74461 4.78065 4.93329 4.97260 5.10441 5.20275 5.23437 5.27373 5.47956 5.62199 5.68665 5.80725 5.87831 5.98560 6.09488 6.10000 6.22132 6.45931 6.62474 6.82298 6.84344 6.93034 6.99523 7.06139 7.30894 7.32014 7.54302 7.55052 7.68248 7.93557 7.99359 8.11655 8.30892 8.39789 8.85905 9.51842 10.98312 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033032 B = 0.002109 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.469062 B =13274.996258 C =13673.650433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.479 3.521 4 O -0.498 6.498 5 C -0.097 4.097 6 H 0.122 0.878 7 C -0.122 4.122 8 C 0.099 3.901 9 N -0.593 5.593 10 C 0.525 3.475 11 O -0.517 6.517 12 C 0.500 3.500 13 O -0.530 6.530 14 N -0.679 5.679 15 C 0.129 3.871 16 C 0.056 3.944 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.507 4.507 20 H 0.058 0.942 21 C 0.066 3.934 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.288 1.288 25 H -0.277 1.277 26 H -0.277 1.277 27 C 0.152 3.848 28 H 0.094 0.906 29 C -0.178 4.178 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.411 0.589 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.008 0.992 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.008 0.992 45 H 0.087 0.913 46 H 0.261 0.739 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.250 -11.004 14.544 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.321 3.679 4 O -0.385 6.385 5 C -0.117 4.117 6 H 0.140 0.860 7 C -0.160 4.160 8 C -0.023 4.023 9 N -0.328 5.328 10 C 0.309 3.691 11 O -0.392 6.392 12 C 0.279 3.721 13 O -0.409 6.409 14 N -0.331 5.331 15 C 0.007 3.993 16 C 0.055 3.945 17 C -0.191 4.191 18 C -0.191 4.191 19 C -0.546 4.546 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.213 1.213 25 H -0.203 1.203 26 H -0.203 1.203 27 C 0.049 3.951 28 H 0.112 0.888 29 C -0.236 4.236 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.248 0.752 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.027 0.973 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.027 0.973 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.287 -10.584 14.407 25.574 hybrid contribution 0.393 0.388 -0.311 0.633 sum -17.894 -10.197 14.097 24.958 Atomic orbital electron populations 1.23306 0.76035 1.03885 1.02712 1.86525 1.23648 1.33244 1.84011 1.23154 0.91275 0.81522 0.71984 1.90685 1.66794 1.36262 1.44731 1.22200 0.88177 1.02242 0.99066 0.86029 1.23001 0.96894 0.94360 1.01745 1.22764 0.96031 1.01364 0.82187 1.48259 1.31737 1.41373 1.11467 1.20204 0.83007 0.83543 0.82381 1.90747 1.68991 1.49195 1.30256 1.19799 0.83504 0.83746 0.85044 1.90671 1.69194 1.50079 1.30926 1.46220 1.32356 1.41771 1.12713 1.21950 0.86197 0.89749 1.01391 1.18384 0.93403 0.94676 0.88034 1.21855 0.96304 0.97200 1.03767 1.21856 0.98134 0.95338 1.03775 1.20895 1.14339 1.22202 0.97150 0.92407 1.24887 0.97261 0.95985 0.95395 1.69795 1.39927 1.41289 1.01234 0.86612 0.82244 0.81773 0.77083 1.21334 1.20281 1.20284 1.21381 0.87112 0.94291 0.92361 0.88825 1.22340 0.97696 1.02242 1.01315 0.87927 0.91782 0.91720 0.88578 0.88727 0.90299 0.87021 0.75184 0.91952 0.91974 0.89441 0.97277 0.95349 0.95343 0.97289 0.89437 0.92874 0.89678 0.91683 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.89 10.52 -39.26 -0.41 -3.30 16 3 C 0.48 4.39 5.06 36.00 0.18 4.57 16 4 O -0.50 -5.78 14.96 -18.75 -0.28 -6.06 16 5 C -0.10 -0.77 3.38 -89.94 -0.30 -1.07 16 6 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.12 -0.99 6.36 -24.46 -0.16 -1.14 16 8 C 0.10 1.01 6.08 -2.41 -0.01 1.00 16 9 N -0.59 -7.31 3.08 -163.39 -0.50 -7.82 16 10 C 0.52 8.13 7.69 -11.59 -0.09 8.04 16 11 O -0.52 -8.86 15.30 5.50 0.08 -8.77 16 12 C 0.50 8.61 7.86 -11.59 -0.09 8.52 16 13 O -0.53 -9.60 13.77 5.50 0.08 -9.53 16 14 N -0.68 -12.44 4.95 -60.73 -0.30 -12.74 16 15 C 0.13 2.65 4.50 -4.04 -0.02 2.63 16 16 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 17 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 18 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 19 C -0.51 -13.04 8.01 -34.45 -0.28 -13.31 16 20 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 21 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 22 N -0.88 -23.47 9.35 55.43 0.52 -22.95 16 23 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.15 1.54 3.42 -66.95 -0.23 1.31 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 C -0.18 -1.95 8.16 37.16 0.30 -1.64 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 8.13 -51.94 -0.42 -0.04 16 33 H 0.10 0.92 7.22 -51.93 -0.37 0.55 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 1.35 6.14 -51.93 -0.32 1.03 16 37 H 0.41 7.46 5.64 -40.82 -0.23 7.23 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 41 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 45 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 46 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 47 H 0.08 1.09 6.59 -51.93 -0.34 0.75 16 48 H 0.06 0.62 7.30 -51.93 -0.38 0.24 16 49 H 0.07 0.79 7.55 -51.93 -0.39 0.40 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -29.49 387.59 -6.77 -36.26 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.57 Total: 6.05 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 0.80 Total: 7.53 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.29 Total: -43.51 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.53 Total: -27.66 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.49 -6.77 -36.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261416065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.379 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds