Wall clock time and date at job start Tue Mar 31 2020 23:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00058 * 2 1 4 4 O 1.20822 * 119.99886 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99869 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.64391 * 321.71259 * 5 3 2 7 7 C 1.55157 * 110.72049 * 198.37192 * 5 3 2 8 8 C 1.55127 * 101.48586 * 205.97113 * 7 5 3 9 9 N 1.47421 * 104.72332 * 37.29841 * 8 7 5 10 10 C 1.34774 * 125.64916 * 155.82059 * 9 8 7 11 11 O 1.21351 * 119.99970 * 179.68803 * 10 9 8 12 12 C 1.49448 * 120.00342 * 359.68185 * 10 9 8 13 13 O 1.21350 * 119.99710 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00342 * 180.02562 * 12 10 9 15 15 C 1.46501 * 120.00088 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47343 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46947 * 59.99565 * 16 15 14 18 18 C 1.53009 * 109.46853 * 299.99966 * 16 15 14 19 19 C 1.50694 * 109.47305 * 180.02562 * 16 15 14 20 20 H 1.08003 * 120.00006 * 359.97438 * 19 16 15 21 21 C 1.37870 * 120.00205 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00166 * 359.97438 * 21 19 16 23 23 Si 1.86806 * 120.00342 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47244 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47035 * 299.99972 * 23 21 19 26 26 H 1.48499 * 109.46825 * 59.99909 * 23 21 19 27 27 C 1.47020 * 108.70396 * 335.54801 * 9 8 7 28 28 H 1.08998 * 109.88738 * 241.87571 * 27 9 8 29 29 C 1.53000 * 109.88272 * 120.86218 * 27 9 8 30 30 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46695 * 299.99302 * 1 2 3 32 32 H 1.08988 * 109.47372 * 59.99657 * 1 2 3 33 33 H 1.08999 * 111.00146 * 324.21324 * 7 5 3 34 34 H 1.08999 * 111.00522 * 88.02542 * 7 5 3 35 35 H 1.08997 * 110.50074 * 278.45368 * 8 7 5 36 36 H 1.09001 * 110.34025 * 156.05723 * 8 7 5 37 37 H 0.97000 * 119.99697 * 0.02562 * 14 12 10 38 38 H 1.09001 * 109.47016 * 60.00076 * 15 14 12 39 39 H 1.09005 * 109.47024 * 300.00607 * 15 14 12 40 40 H 1.09003 * 109.46388 * 179.97438 * 17 16 15 41 41 H 1.08993 * 109.47486 * 300.00278 * 17 16 15 42 42 H 1.08995 * 109.46791 * 60.00841 * 17 16 15 43 43 H 1.09001 * 109.46953 * 300.00132 * 18 16 15 44 44 H 1.08998 * 109.46518 * 59.99751 * 18 16 15 45 45 H 1.08994 * 109.46925 * 179.97438 * 18 16 15 46 46 H 0.96997 * 120.00850 * 180.02562 * 22 21 19 47 47 H 1.08991 * 109.47425 * 56.62610 * 29 27 9 48 48 H 1.08997 * 109.47327 * 176.63451 * 29 27 9 49 49 H 1.09000 * 109.46914 * 296.62338 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9922 0.4953 0.6311 7 6 4.0427 2.6788 0.4569 8 6 5.4268 2.7766 -0.2368 9 7 5.2382 2.1204 -1.5434 10 6 5.9748 2.3461 -2.6492 11 8 5.7327 1.7417 -3.6733 12 6 7.0897 3.3408 -2.6144 13 8 7.3320 3.9449 -1.5903 14 7 7.8259 3.5668 -3.7205 15 6 8.9192 4.5414 -3.6861 16 6 9.5878 4.6065 -5.0608 17 6 8.5579 5.0319 -6.1092 18 6 10.1446 3.2281 -5.4228 19 6 10.7127 5.6086 -5.0253 20 1 10.9289 6.1457 -4.1136 21 6 11.4660 5.8397 -6.1567 22 7 11.2031 5.1854 -7.2668 23 14 12.8600 7.0825 -6.1130 24 1 13.5098 7.1446 -7.4468 25 1 12.3196 8.4204 -5.7623 26 1 13.8592 6.6698 -5.0949 27 6 4.1178 1.1743 -1.4385 28 1 4.4693 0.1606 -1.6306 29 6 3.0269 1.5461 -2.4448 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8898 33 1 3.3671 3.4561 0.0998 34 1 4.1464 2.7221 1.5411 35 1 6.1837 2.2514 0.3458 36 1 5.7090 3.8205 -0.3738 37 1 7.6319 3.0841 -4.5392 38 1 9.6526 4.2385 -2.9389 39 1 8.5224 5.5235 -3.4285 40 1 9.0344 5.0787 -7.0884 41 1 7.7445 4.3068 -6.1347 42 1 8.1613 6.0139 -5.8513 43 1 10.8782 2.9249 -4.6759 44 1 9.3311 2.5030 -5.4483 45 1 10.6205 3.2743 -6.4023 46 1 11.7332 5.3476 -8.0627 47 1 3.4506 1.5670 -3.4488 48 1 2.2271 0.8068 -2.4033 49 1 2.6258 2.5293 -2.1990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261416065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:33 Heat of formation + Delta-G solvation = -167.324376 kcal Electronic energy + Delta-G solvation = -30577.125058 eV Core-core repulsion = 26311.073976 eV Total energy + Delta-G solvation = -4266.051083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.33902 -41.50252 -40.04874 -38.73050 -38.18196 -37.44196 -35.11237 -33.37897 -32.74109 -32.36849 -29.17936 -27.98448 -27.58756 -27.31625 -27.13746 -25.65503 -23.68442 -23.25785 -21.25318 -20.75739 -20.50413 -19.11687 -18.58266 -18.09249 -17.81604 -17.68021 -17.49679 -17.12417 -16.65894 -16.56423 -16.18214 -15.68162 -15.28451 -14.96252 -14.75901 -14.73122 -14.44010 -14.24814 -14.10188 -14.05195 -13.76356 -13.45342 -13.23184 -13.20273 -13.11340 -12.96483 -12.92255 -12.67773 -12.61310 -12.42737 -12.27101 -12.11846 -12.09034 -11.83991 -11.79000 -11.53794 -11.50226 -11.27722 -10.74711 -10.53601 -10.40058 -10.15432 -9.91912 -8.00524 -6.17064 0.32926 0.95064 1.21921 1.46691 1.47819 1.54217 1.69844 2.11901 2.42261 2.53375 3.14596 3.23189 3.28277 3.41620 3.66926 3.93046 4.07070 4.15739 4.19877 4.30965 4.34337 4.35126 4.37013 4.48261 4.55261 4.68176 4.72661 4.74547 4.79400 4.86353 4.94399 5.01577 5.04084 5.07282 5.10513 5.17422 5.17907 5.26337 5.34164 5.49194 5.64846 5.68092 5.95927 6.11329 6.19040 6.23574 6.41559 6.64391 6.65384 6.86502 6.95638 7.50747 8.98477 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033032 B = 0.002109 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.469062 B =13274.996258 C =13673.650433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.481 3.519 4 O -0.527 6.527 5 C -0.088 4.088 6 H 0.157 0.843 7 C -0.113 4.113 8 C 0.095 3.905 9 N -0.586 5.586 10 C 0.526 3.474 11 O -0.539 6.539 12 C 0.500 3.500 13 O -0.539 6.539 14 N -0.682 5.682 15 C 0.145 3.855 16 C 0.049 3.951 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.524 4.524 20 H 0.052 0.948 21 C 0.025 3.975 22 N -0.901 5.901 23 Si 0.948 3.052 24 H -0.287 1.287 25 H -0.276 1.276 26 H -0.275 1.275 27 C 0.147 3.853 28 H 0.107 0.893 29 C -0.172 4.172 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.412 0.588 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.028 0.972 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.029 0.971 45 H 0.063 0.937 46 H 0.260 0.740 47 H 0.063 0.937 48 H 0.079 0.921 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.110 -12.271 16.408 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.324 3.676 4 O -0.416 6.416 5 C -0.107 4.107 6 H 0.175 0.825 7 C -0.151 4.151 8 C -0.027 4.027 9 N -0.320 5.320 10 C 0.309 3.691 11 O -0.416 6.416 12 C 0.281 3.719 13 O -0.417 6.417 14 N -0.334 5.334 15 C 0.023 3.977 16 C 0.049 3.951 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.563 4.563 20 H 0.071 0.929 21 C -0.175 4.175 22 N -0.540 5.540 23 Si 0.775 3.225 24 H -0.212 1.212 25 H -0.201 1.201 26 H -0.200 1.200 27 C 0.044 3.956 28 H 0.125 0.875 29 C -0.229 4.229 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.048 0.952 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.174 -11.868 16.312 27.831 hybrid contribution 0.558 0.754 -0.832 1.254 sum -18.616 -11.114 15.480 26.641 Atomic orbital electron populations 1.23567 0.74722 1.05772 1.02568 1.86519 1.24962 1.32482 1.83527 1.23335 0.91658 0.81405 0.71179 1.90684 1.67520 1.37261 1.46096 1.22238 0.87509 1.03132 0.97821 0.82532 1.22947 0.94843 0.94037 1.03231 1.22904 0.97997 1.00304 0.81463 1.48336 1.31249 1.41140 1.11250 1.19748 0.83013 0.83277 0.83077 1.90741 1.69660 1.50021 1.31171 1.20133 0.83621 0.83776 0.84384 1.90670 1.69485 1.50448 1.31146 1.46065 1.32276 1.41693 1.13341 1.21541 0.86579 0.90004 0.99622 1.18390 0.93084 0.94254 0.89395 1.21704 0.96609 0.97548 1.02287 1.21698 0.98520 0.95750 1.02113 1.21198 1.15307 1.22825 0.96975 0.92948 1.25513 0.99204 0.97499 0.95280 1.69919 1.40509 1.42090 1.01454 0.85765 0.79902 0.79874 0.76942 1.21219 1.20137 1.20031 1.21592 0.86078 0.94184 0.93728 0.87472 1.22252 0.98264 1.02032 1.00395 0.85083 0.91632 0.92238 0.90373 0.85704 0.88461 0.89007 0.75034 0.92493 0.92747 0.91825 0.95283 0.95839 0.95673 0.95239 0.91853 0.93078 0.91781 0.90251 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.36 -4.87 10.52 -51.44 -0.54 -5.41 16 3 C 0.48 7.75 5.06 71.23 0.36 8.11 16 4 O -0.53 -11.55 14.96 21.98 0.33 -11.22 16 5 C -0.09 -1.12 3.38 -10.35 -0.04 -1.15 16 6 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 7 C -0.11 -1.54 6.36 32.06 0.20 -1.34 16 8 C 0.09 1.76 6.08 86.93 0.53 2.29 16 9 N -0.59 -13.59 3.08 -789.19 -2.43 -16.02 16 10 C 0.53 15.88 7.69 87.27 0.67 16.55 16 11 O -0.54 -18.18 15.30 -3.25 -0.05 -18.23 16 12 C 0.50 16.96 7.86 87.27 0.69 17.65 16 13 O -0.54 -19.18 13.77 -3.25 -0.04 -19.23 16 14 N -0.68 -24.68 4.95 -464.40 -2.30 -26.98 16 15 C 0.15 5.95 4.50 86.38 0.39 6.34 16 16 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 17 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 18 C -0.12 -5.58 8.08 71.99 0.58 -4.99 16 19 C -0.52 -27.12 8.01 25.60 0.21 -26.91 16 20 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 21 C 0.02 1.29 5.15 84.65 0.44 1.73 16 22 N -0.90 -48.33 9.35 21.45 0.20 -48.13 16 23 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 24 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C 0.15 2.66 3.42 45.34 0.16 2.82 16 28 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 29 C -0.17 -3.60 8.16 71.98 0.59 -3.01 16 30 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 32 H 0.06 0.61 8.13 -2.39 -0.02 0.59 16 33 H 0.08 1.41 7.22 -2.39 -0.02 1.39 16 34 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 2.13 6.14 -2.39 -0.01 2.12 16 37 H 0.41 14.72 5.64 -92.71 -0.52 14.20 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 41 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 45 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 46 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 47 H 0.06 1.63 6.59 -2.39 -0.02 1.61 16 48 H 0.08 1.40 7.30 -2.39 -0.02 1.39 16 49 H 0.05 1.26 7.55 -2.39 -0.02 1.24 16 Total: -1.00 -63.63 387.59 4.16 -59.48 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.45 Total: 24.87 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 6.52 Total: 16.70 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -4.53 Total: -91.13 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.31 Total: -54.08 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -63.63 4.16 -59.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261416065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.848 kcal (2) G-P(sol) polarization free energy of solvation -63.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds