Wall clock time and date at job start Tue Mar 31 2020 23:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99789 * 2 1 4 4 O 1.20823 * 120.00115 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99730 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.37104 * 302.18743 * 5 3 2 7 7 C 1.54614 * 110.32753 * 64.38580 * 5 3 2 8 8 C 1.54598 * 102.91234 * 140.58928 * 7 5 3 9 9 N 1.48116 * 103.42330 * 322.86464 * 8 7 5 10 10 C 1.34776 * 127.03004 * 219.28805 * 9 8 7 11 11 O 1.21354 * 119.99730 * 179.68021 * 10 9 8 12 12 C 1.49445 * 120.00615 * 359.68429 * 10 9 8 13 13 O 1.21354 * 119.99719 * 0.02562 * 12 10 9 14 14 N 1.34766 * 120.00552 * 179.97438 * 12 10 9 15 15 C 1.46505 * 120.00458 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.46982 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47219 * 60.00502 * 16 15 14 18 18 C 1.52995 * 109.47476 * 299.99977 * 16 15 14 19 19 C 1.50705 * 109.46586 * 179.97438 * 16 15 14 20 20 H 1.07993 * 120.00405 * 4.70810 * 19 16 15 21 21 C 1.37879 * 119.99695 * 184.70315 * 19 16 15 22 22 N 1.31514 * 120.00277 * 159.97328 * 21 19 16 23 23 Si 1.86804 * 120.00140 * 339.96647 * 21 19 16 24 24 H 1.48500 * 109.47334 * 275.38677 * 23 21 19 25 25 H 1.48500 * 109.46888 * 35.38597 * 23 21 19 26 26 H 1.48501 * 109.46808 * 155.38424 * 23 21 19 27 27 C 1.47486 * 105.93160 * 39.02333 * 9 8 7 28 28 H 1.08994 * 109.91319 * 215.22759 * 27 9 8 29 29 C 1.53004 * 109.90742 * 94.14152 * 27 9 8 30 30 H 1.08998 * 109.46582 * 299.99008 * 1 2 3 31 31 H 1.08995 * 109.47417 * 60.00159 * 1 2 3 32 32 H 1.09008 * 109.46395 * 180.02562 * 1 2 3 33 33 H 1.09008 * 110.73413 * 259.07391 * 7 5 3 34 34 H 1.08994 * 110.74462 * 22.21665 * 7 5 3 35 35 H 1.09001 * 110.61394 * 204.34539 * 8 7 5 36 36 H 1.09003 * 110.54519 * 81.34565 * 8 7 5 37 37 H 0.97002 * 120.00213 * 359.97438 * 14 12 10 38 38 H 1.08998 * 109.46858 * 59.99765 * 15 14 12 39 39 H 1.08998 * 109.46904 * 299.99953 * 15 14 12 40 40 H 1.08997 * 109.47185 * 171.20048 * 17 16 15 41 41 H 1.09004 * 109.46488 * 291.19473 * 17 16 15 42 42 H 1.08999 * 109.47155 * 51.19013 * 17 16 15 43 43 H 1.08996 * 109.47159 * 299.99925 * 18 16 15 44 44 H 1.08995 * 109.47120 * 60.00073 * 18 16 15 45 45 H 1.09002 * 109.47126 * 180.02562 * 18 16 15 46 46 H 0.96993 * 120.00631 * 180.02562 * 22 21 19 47 47 H 1.08993 * 109.47247 * 61.45601 * 29 27 9 48 48 H 1.09003 * 109.46444 * 181.45413 * 29 27 9 49 49 H 1.09001 * 109.47186 * 301.44876 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9740 0.7510 0.8639 7 6 4.1350 0.6773 -1.3083 8 6 5.2979 1.6370 -1.6496 9 7 4.7767 2.9646 -1.2501 10 6 4.9492 4.1332 -1.8991 11 8 4.4571 5.1508 -1.4576 12 6 5.7462 4.1758 -3.1626 13 8 6.2378 3.1580 -3.6044 14 7 5.9182 5.3441 -3.8118 15 6 6.6991 5.3858 -5.0507 16 6 6.7390 6.8206 -5.5804 17 6 7.3891 7.7315 -4.5370 18 6 5.3136 7.3011 -5.8596 19 6 7.5429 6.8635 -6.8544 20 1 7.9171 5.9479 -7.2879 21 6 7.8004 8.0717 -7.4667 22 7 8.7948 8.1774 -8.3208 23 14 6.7368 9.5587 -7.0831 24 1 5.5248 9.5350 -7.9409 25 1 6.3329 9.5231 -5.6546 26 1 7.5072 10.8001 -7.3489 27 6 4.0249 2.7451 -0.0004 28 1 3.1595 3.4069 0.0334 29 6 4.9296 3.0086 1.2050 30 1 -0.3632 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0278 0.0005 33 1 4.5038 -0.3349 -1.1417 34 1 3.3824 0.6874 -2.0966 35 1 5.5137 1.6139 -2.7178 36 1 6.1861 1.3826 -1.0712 37 1 5.5244 6.1575 -3.4593 38 1 6.2358 4.7372 -5.7941 39 1 7.7145 5.0431 -4.8518 40 1 7.5600 8.7167 -4.9708 41 1 6.7295 7.8240 -3.6741 42 1 8.3406 7.3028 -4.2227 43 1 4.8506 6.6522 -6.6030 44 1 4.7326 7.2701 -4.9380 45 1 5.3421 8.3232 -6.2374 46 1 8.9763 9.0274 -8.7513 47 1 5.2631 4.0462 1.1890 48 1 4.3747 2.8194 2.1239 49 1 5.7954 2.3479 1.1608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261416066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:37 Heat of formation + Delta-G solvation = -129.877122 kcal Electronic energy + Delta-G solvation = -30675.380725 eV Core-core repulsion = 26410.953477 eV Total energy + Delta-G solvation = -4264.427248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41218 -40.45716 -38.96447 -37.72991 -36.87484 -36.70592 -33.51042 -32.33613 -31.59334 -31.51477 -28.65084 -27.01260 -26.68772 -26.33937 -25.16086 -24.33535 -22.79514 -22.09500 -20.52500 -19.70817 -19.13870 -18.24214 -17.73105 -17.25289 -16.88103 -16.50799 -16.22563 -16.06373 -15.50026 -15.10898 -14.94938 -14.39518 -14.29028 -14.00619 -13.81747 -13.60835 -13.39321 -13.24128 -13.04278 -12.90802 -12.71781 -12.68149 -12.54258 -12.27096 -12.17806 -11.98449 -11.93507 -11.60310 -11.36811 -11.29418 -11.23865 -11.10307 -10.71126 -10.49685 -10.34631 -10.22418 -10.05568 -9.37856 -9.18797 -9.04146 -8.73202 -8.71169 -8.39518 -6.19504 -4.13124 1.55523 1.75542 2.07391 2.41470 3.25210 3.33962 3.34750 3.38919 3.56841 3.92288 4.06023 4.25089 4.35538 4.60505 4.64103 4.69314 4.76711 4.80041 4.85182 5.03107 5.08900 5.11224 5.12496 5.22816 5.44148 5.59164 5.66278 5.68673 5.71248 5.87061 5.90439 5.98923 6.00755 6.06137 6.37573 6.41339 6.49685 6.59104 6.62584 6.70469 6.91019 7.07683 7.19804 7.29288 7.39463 7.45818 7.70540 7.85130 8.22354 8.41563 8.87622 9.47061 10.93139 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.002335 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.657652 B =11990.210861 C =12130.181820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.468 3.532 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.128 0.872 7 C -0.122 4.122 8 C 0.086 3.914 9 N -0.594 5.594 10 C 0.527 3.473 11 O -0.517 6.517 12 C 0.504 3.496 13 O -0.526 6.526 14 N -0.685 5.685 15 C 0.139 3.861 16 C 0.030 3.970 17 C -0.144 4.144 18 C -0.151 4.151 19 C -0.518 4.518 20 H 0.077 0.923 21 C 0.081 3.919 22 N -0.883 5.883 23 Si 0.873 3.127 24 H -0.284 1.284 25 H -0.245 1.245 26 H -0.302 1.302 27 C 0.133 3.867 28 H 0.112 0.888 29 C -0.158 4.158 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.024 0.976 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.029 0.971 45 H 0.045 0.955 46 H 0.265 0.735 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 -17.463 19.718 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.310 3.690 4 O -0.384 6.384 5 C -0.114 4.114 6 H 0.145 0.855 7 C -0.160 4.160 8 C -0.036 4.036 9 N -0.329 5.329 10 C 0.311 3.689 11 O -0.392 6.392 12 C 0.283 3.717 13 O -0.404 6.404 14 N -0.337 5.337 15 C 0.017 3.983 16 C 0.028 3.972 17 C -0.202 4.202 18 C -0.208 4.208 19 C -0.556 4.556 20 H 0.095 0.905 21 C -0.123 4.123 22 N -0.519 5.519 23 Si 0.704 3.296 24 H -0.211 1.211 25 H -0.171 1.171 26 H -0.231 1.231 27 C 0.030 3.970 28 H 0.129 0.871 29 C -0.216 4.216 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.143 0.857 36 H 0.099 0.901 37 H 0.246 0.754 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.004 -17.092 19.419 28.519 hybrid contribution -1.025 1.282 0.255 1.661 sum -13.030 -15.810 19.674 28.404 Atomic orbital electron populations 1.23317 0.75976 1.03873 1.02776 1.86494 1.23658 1.33009 1.84042 1.23450 0.91724 0.81517 0.72275 1.90704 1.66821 1.36248 1.44670 1.22040 0.87988 0.98434 1.02973 0.85461 1.22718 0.98548 1.00042 0.94688 1.23047 0.95588 0.79735 1.05263 1.48545 1.51904 1.08028 1.24425 1.20101 0.81462 0.82349 0.85001 1.90769 1.48552 1.32544 1.67333 1.19808 0.82072 0.84959 0.84830 1.90624 1.49330 1.32888 1.67588 1.46210 1.51870 1.09548 1.26029 1.21741 0.94588 0.99630 0.82295 1.18720 0.93016 0.89683 0.95741 1.22319 0.99532 1.00961 0.97352 1.22388 0.98259 1.00792 0.99325 1.20616 1.33367 0.94965 1.06632 0.90519 1.24920 0.94073 0.98400 0.94900 1.70006 1.26106 1.26123 1.29682 0.87518 0.80468 0.81961 0.79648 1.21124 1.17076 1.23063 1.21662 0.96513 0.94245 0.84587 0.87054 1.22152 0.99747 1.03356 0.96372 0.91775 0.91716 0.87874 0.88184 0.90145 0.85696 0.90131 0.75352 0.91307 0.91050 0.92443 0.95679 0.93255 0.92851 0.95155 0.93685 0.92517 0.91238 0.91155 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.88 10.57 -39.25 -0.41 -3.29 16 3 C 0.47 4.51 7.12 36.01 0.26 4.76 16 4 O -0.50 -6.47 14.99 -18.75 -0.28 -6.75 16 5 C -0.09 -0.72 3.14 -90.40 -0.28 -1.00 16 6 H 0.13 0.59 7.69 -51.93 -0.40 0.19 16 7 C -0.12 -0.86 6.59 -25.04 -0.17 -1.02 16 8 C 0.09 0.81 6.58 -2.31 -0.02 0.80 16 9 N -0.59 -7.28 2.92 -163.00 -0.48 -7.76 16 10 C 0.53 8.14 7.96 -11.59 -0.09 8.05 16 11 O -0.52 -9.08 16.81 5.49 0.09 -8.98 16 12 C 0.50 8.34 7.87 -11.59 -0.09 8.25 16 13 O -0.53 -9.14 13.70 5.49 0.08 -9.06 16 14 N -0.68 -11.83 5.00 -60.73 -0.30 -12.13 16 15 C 0.14 2.71 4.49 -4.04 -0.02 2.70 16 16 C 0.03 0.65 0.50 -155.66 -0.08 0.57 16 17 C -0.14 -3.00 7.51 37.16 0.28 -2.72 16 18 C -0.15 -3.11 7.63 37.15 0.28 -2.82 16 19 C -0.52 -13.69 8.60 -34.44 -0.30 -13.99 16 20 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 21 C 0.08 2.22 5.23 -17.82 -0.09 2.13 16 22 N -0.88 -26.07 13.96 55.43 0.77 -25.29 16 23 Si 0.87 20.91 22.98 -169.99 -3.91 17.01 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.25 -5.41 4.61 56.52 0.26 -5.15 16 26 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 27 C 0.13 1.38 2.96 -66.86 -0.20 1.18 16 28 H 0.11 1.46 6.34 -51.93 -0.33 1.13 16 29 C -0.16 -1.31 9.30 37.16 0.35 -0.96 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 32 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.10 0.44 8.14 -51.92 -0.42 0.01 16 34 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 35 H 0.13 1.43 5.45 -51.93 -0.28 1.15 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.41 6.89 5.72 -40.82 -0.23 6.65 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.06 1.27 4.03 -51.93 -0.21 1.06 16 41 H 0.02 0.45 7.11 -51.93 -0.37 0.08 16 42 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.54 6.86 -51.93 -0.36 0.19 16 45 H 0.04 0.98 2.61 -51.93 -0.14 0.84 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -32.68 383.42 -5.25 -37.93 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.49 Total: 5.38 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 0.90 Total: 7.18 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.01 Total: -45.19 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.53 Total: -28.09 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -3.91 Total: 17.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.68 -5.25 -37.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261416066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.949 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds