Wall clock time and date at job start Tue Mar 31 2020 23:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00032 * 2 1 4 4 O 1.20824 * 119.99965 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00311 * 179.97438 * 3 2 1 6 6 H 1.08992 * 110.63756 * 56.85157 * 5 3 2 7 7 C 1.55451 * 110.70127 * 293.54432 * 5 3 2 8 8 C 1.54908 * 101.44568 * 206.14323 * 7 5 3 9 9 N 1.47419 * 104.93220 * 37.00504 * 8 7 5 10 10 C 1.34777 * 125.64930 * 155.79291 * 9 8 7 11 11 O 1.21355 * 119.99782 * 179.97438 * 10 9 8 12 12 C 1.49447 * 120.00017 * 359.97438 * 10 9 8 13 13 O 1.21346 * 120.00006 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00017 * 180.02562 * 12 10 9 15 15 C 1.46503 * 120.00331 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47177 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47230 * 299.99764 * 16 15 14 18 18 C 1.52995 * 109.47505 * 60.00170 * 16 15 14 19 19 C 1.50700 * 109.46965 * 179.97438 * 16 15 14 20 20 H 1.07998 * 120.00035 * 1.34821 * 19 16 15 21 21 C 1.37877 * 120.00082 * 181.34261 * 19 16 15 22 22 N 1.31519 * 120.00251 * 193.97421 * 21 19 16 23 23 Si 1.86802 * 119.99910 * 13.98056 * 21 19 16 24 24 H 1.48505 * 109.47103 * 84.54568 * 23 21 19 25 25 H 1.48501 * 109.46761 * 204.54428 * 23 21 19 26 26 H 1.48496 * 109.47012 * 324.54463 * 23 21 19 27 27 C 1.47022 * 108.70531 * 335.81832 * 9 8 7 28 28 H 1.08994 * 109.88615 * 120.62796 * 27 9 8 29 29 C 1.53005 * 109.88436 * 241.64359 * 27 9 8 30 30 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47471 * 300.00586 * 1 2 3 32 32 H 1.09005 * 109.47124 * 60.00809 * 1 2 3 33 33 H 1.09000 * 111.11558 * 88.09328 * 7 5 3 34 34 H 1.08991 * 111.01390 * 324.14737 * 7 5 3 35 35 H 1.09004 * 110.36949 * 278.11463 * 8 7 5 36 36 H 1.09000 * 110.36784 * 155.90278 * 8 7 5 37 37 H 0.97010 * 120.00095 * 359.97438 * 14 12 10 38 38 H 1.08999 * 109.46901 * 300.00445 * 15 14 12 39 39 H 1.09000 * 109.46637 * 59.99661 * 15 14 12 40 40 H 1.09001 * 109.46954 * 69.36726 * 17 16 15 41 41 H 1.09001 * 109.47437 * 189.37156 * 17 16 15 42 42 H 1.08997 * 109.47020 * 309.37177 * 17 16 15 43 43 H 1.09006 * 109.47201 * 59.99585 * 18 16 15 44 44 H 1.08997 * 109.47344 * 180.02562 * 18 16 15 45 45 H 1.09004 * 109.46849 * 300.00177 * 18 16 15 46 46 H 0.96992 * 120.00240 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.47281 * 58.53880 * 29 27 9 48 48 H 1.08997 * 109.47007 * 178.54351 * 29 27 9 49 49 H 1.09002 * 109.46406 * 298.54043 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9795 0.7379 -0.8531 7 6 4.1450 0.7239 1.3340 8 6 5.4905 1.4863 1.4236 9 7 5.2012 2.8309 0.8929 10 6 5.8905 3.9532 1.1788 11 8 5.5617 5.0104 0.6816 12 6 7.0594 3.8959 2.1081 13 8 7.3878 2.8390 2.6056 14 7 7.7483 5.0184 2.3945 15 6 8.8940 4.9624 3.3059 16 6 9.4925 6.3620 3.4594 17 6 9.9528 6.8726 2.0925 18 6 8.4344 7.3097 4.0279 19 6 10.6705 6.3045 4.3974 20 1 10.9765 5.3601 4.8228 21 6 11.3578 7.4574 4.7126 22 7 12.5333 7.3832 5.2978 23 14 10.6193 9.1250 4.3085 24 1 9.6972 9.5351 5.3979 25 1 11.7059 10.1285 4.1757 26 1 9.8679 9.0371 3.0307 27 6 4.0360 2.7449 0.0004 28 1 3.2390 3.3912 0.3681 29 6 4.4336 3.1639 -1.4164 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 4.3088 -0.3522 1.2761 34 1 3.4974 0.9743 2.1742 35 1 6.2475 0.9928 0.8140 36 1 5.8218 1.5507 2.4600 37 1 7.4856 5.8634 1.9970 38 1 8.5660 4.5990 4.2798 39 1 9.6476 4.2869 2.9010 40 1 9.0825 7.0725 1.4674 41 1 10.5259 7.7907 2.2217 42 1 10.5778 6.1183 1.6146 43 1 8.1065 6.9459 5.0018 44 1 8.8607 8.3069 4.1369 45 1 7.5820 7.3513 3.3498 46 1 13.0170 8.1943 5.5191 47 1 5.2359 2.5187 -1.7745 48 1 3.5717 3.0730 -2.0774 49 1 4.7764 4.1986 -1.4065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261416068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:42 Heat of formation + Delta-G solvation = -131.019403 kcal Electronic energy + Delta-G solvation = -30536.901085 eV Core-core repulsion = 26272.424304 eV Total energy + Delta-G solvation = -4264.476781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42424 -40.52393 -38.98353 -37.71290 -36.90790 -36.73543 -33.51868 -32.39853 -31.76123 -31.50821 -28.62353 -26.97998 -26.51289 -26.36713 -25.16361 -24.35417 -22.91236 -22.13967 -20.60572 -19.72802 -19.15035 -18.31557 -17.69638 -17.33885 -16.82514 -16.51236 -16.15447 -16.06938 -15.50404 -15.15931 -14.95484 -14.44025 -14.29948 -14.01969 -13.98299 -13.74554 -13.48394 -13.13728 -13.11646 -12.93400 -12.68298 -12.64668 -12.48791 -12.27777 -12.18656 -12.04162 -12.00748 -11.50658 -11.38563 -11.36718 -11.28387 -11.17752 -10.76501 -10.49390 -10.33433 -10.18908 -10.08559 -9.38391 -9.13171 -9.00761 -8.72806 -8.70434 -8.48103 -6.16988 -4.14790 1.54574 1.69459 1.98238 2.46410 3.24792 3.32751 3.34351 3.39119 3.52472 3.88863 3.96361 4.24514 4.34624 4.56878 4.62016 4.65042 4.72176 4.75630 4.82261 5.01875 5.06923 5.13840 5.14620 5.28542 5.42608 5.62177 5.65593 5.68214 5.70599 5.83675 5.92767 5.97410 6.03280 6.04979 6.33805 6.39547 6.47437 6.56547 6.60188 6.67380 6.89259 7.01786 7.16569 7.24021 7.38269 7.44566 7.68589 7.83758 8.21727 8.41775 8.87144 9.46809 10.95725 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.002202 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.615389 B =12710.040624 C =13050.419322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.473 3.527 4 O -0.499 6.499 5 C -0.096 4.096 6 H 0.128 0.872 7 C -0.121 4.121 8 C 0.097 3.903 9 N -0.593 5.593 10 C 0.524 3.476 11 O -0.517 6.517 12 C 0.502 3.498 13 O -0.526 6.526 14 N -0.686 5.686 15 C 0.139 3.861 16 C 0.028 3.972 17 C -0.145 4.145 18 C -0.151 4.151 19 C -0.513 4.513 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.890 5.890 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.305 1.305 26 H -0.248 1.248 27 C 0.144 3.856 28 H 0.101 0.899 29 C -0.164 4.164 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.409 0.591 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.031 0.969 46 H 0.265 0.735 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.386 -15.618 -12.524 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.315 3.685 4 O -0.386 6.386 5 C -0.115 4.115 6 H 0.145 0.855 7 C -0.160 4.160 8 C -0.025 4.025 9 N -0.328 5.328 10 C 0.308 3.692 11 O -0.392 6.392 12 C 0.282 3.718 13 O -0.404 6.404 14 N -0.338 5.338 15 C 0.018 3.982 16 C 0.027 3.973 17 C -0.202 4.202 18 C -0.207 4.207 19 C -0.551 4.551 20 H 0.096 0.904 21 C -0.127 4.127 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.213 1.213 25 H -0.234 1.234 26 H -0.174 1.174 27 C 0.041 3.959 28 H 0.119 0.881 29 C -0.221 4.221 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.246 0.754 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.315 -15.313 -12.316 28.991 hybrid contribution -0.702 1.400 -0.311 1.596 sum -22.017 -13.913 -12.627 28.944 Atomic orbital electron populations 1.23321 0.75908 1.03923 1.02771 1.86496 1.23689 1.32973 1.83975 1.23277 0.91374 0.81540 0.72300 1.90706 1.66887 1.36259 1.44717 1.22187 0.88078 0.98447 1.02806 0.85462 1.22950 0.96722 1.01536 0.94748 1.22709 0.95974 0.80839 1.02986 1.48262 1.30274 1.08498 1.45781 1.20135 0.83881 0.82793 0.82434 1.90754 1.67875 1.28564 1.52008 1.19802 0.83934 0.85239 0.82849 1.90684 1.67992 1.29018 1.52668 1.46203 1.30974 1.10165 1.46432 1.21730 0.84998 0.99800 0.91695 1.18747 0.94431 0.89735 0.94427 1.22319 0.99175 1.01511 0.97215 1.22384 0.97998 0.99865 1.00491 1.20661 1.10820 0.96225 1.27412 0.90449 1.24963 0.94049 0.99124 0.94543 1.69943 1.11737 1.28931 1.41986 0.87310 0.77517 0.83824 0.79686 1.21299 1.23350 1.17426 1.21507 0.88691 0.94102 0.91641 0.88150 1.22162 1.01897 1.03765 0.94320 0.87846 0.91705 0.91748 0.87942 0.89876 0.90196 0.87025 0.75378 0.91246 0.91119 0.95694 0.92357 0.93314 0.92681 0.93882 0.94960 0.92513 0.92018 0.91392 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.63 10.56 -39.24 -0.41 -3.04 16 3 C 0.47 4.18 7.26 36.01 0.26 4.44 16 4 O -0.50 -5.90 15.17 -18.75 -0.28 -6.18 16 5 C -0.10 -0.71 2.98 -89.77 -0.27 -0.98 16 6 H 0.13 0.66 7.85 -51.93 -0.41 0.25 16 7 C -0.12 -0.81 6.54 -24.42 -0.16 -0.97 16 8 C 0.10 0.91 6.06 -2.53 -0.02 0.89 16 9 N -0.59 -7.05 3.06 -163.52 -0.50 -7.55 16 10 C 0.52 7.79 7.71 -11.59 -0.09 7.70 16 11 O -0.52 -8.63 15.52 5.49 0.09 -8.54 16 12 C 0.50 8.13 7.86 -11.59 -0.09 8.04 16 13 O -0.53 -9.01 13.77 5.50 0.08 -8.94 16 14 N -0.69 -11.61 5.00 -60.73 -0.30 -11.92 16 15 C 0.14 2.69 4.49 -4.04 -0.02 2.67 16 16 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 17 C -0.14 -2.97 7.53 37.16 0.28 -2.69 16 18 C -0.15 -3.09 7.52 37.16 0.28 -2.81 16 19 C -0.51 -13.52 8.62 -34.44 -0.30 -13.81 16 20 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 21 C 0.08 2.10 5.32 -17.82 -0.09 2.00 16 22 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 23 Si 0.88 21.12 22.79 -169.99 -3.87 17.25 16 24 H -0.29 -6.81 7.10 56.52 0.40 -6.41 16 25 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.25 -5.46 4.65 56.52 0.26 -5.19 16 27 C 0.14 1.49 2.88 -66.95 -0.19 1.29 16 28 H 0.10 1.25 6.81 -51.93 -0.35 0.90 16 29 C -0.16 -1.58 9.10 37.16 0.34 -1.24 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 32 H 0.06 0.33 8.13 -51.93 -0.42 -0.10 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.23 6.15 -51.93 -0.32 0.91 16 37 H 0.41 6.72 5.73 -40.82 -0.23 6.49 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.02 0.44 7.13 -51.93 -0.37 0.07 16 41 H 0.06 1.27 4.30 -51.93 -0.22 1.05 16 42 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.04 0.94 2.25 -51.93 -0.12 0.82 16 45 H 0.03 0.57 6.86 -51.93 -0.36 0.21 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.94 6.88 -51.93 -0.36 0.58 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -32.10 381.46 -5.27 -37.37 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.50 Total: 5.01 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 0.92 Total: 6.31 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.03 Total: -44.99 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.54 Total: -26.70 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -3.87 Total: 17.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.10 -5.27 -37.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261416068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.649 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds