Wall clock time and date at job start Tue Mar 31 2020 23:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00032 * 2 1 4 4 O 1.20824 * 119.99965 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00311 * 179.97438 * 3 2 1 6 6 H 1.08992 * 110.63756 * 56.85157 * 5 3 2 7 7 C 1.55451 * 110.70127 * 293.54432 * 5 3 2 8 8 C 1.54908 * 101.44568 * 206.14323 * 7 5 3 9 9 N 1.47419 * 104.93220 * 37.00504 * 8 7 5 10 10 C 1.34777 * 125.64930 * 155.79291 * 9 8 7 11 11 O 1.21355 * 119.99782 * 179.97438 * 10 9 8 12 12 C 1.49447 * 120.00017 * 359.97438 * 10 9 8 13 13 O 1.21346 * 120.00006 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00017 * 180.02562 * 12 10 9 15 15 C 1.46503 * 120.00331 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47177 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47230 * 299.99764 * 16 15 14 18 18 C 1.52995 * 109.47505 * 60.00170 * 16 15 14 19 19 C 1.50700 * 109.46965 * 179.97438 * 16 15 14 20 20 H 1.07998 * 120.00035 * 1.34821 * 19 16 15 21 21 C 1.37877 * 120.00082 * 181.34261 * 19 16 15 22 22 N 1.31519 * 120.00251 * 193.97421 * 21 19 16 23 23 Si 1.86802 * 119.99910 * 13.98056 * 21 19 16 24 24 H 1.48505 * 109.47103 * 84.54568 * 23 21 19 25 25 H 1.48501 * 109.46761 * 204.54428 * 23 21 19 26 26 H 1.48496 * 109.47012 * 324.54463 * 23 21 19 27 27 C 1.47022 * 108.70531 * 335.81832 * 9 8 7 28 28 H 1.08994 * 109.88615 * 120.62796 * 27 9 8 29 29 C 1.53005 * 109.88436 * 241.64359 * 27 9 8 30 30 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47471 * 300.00586 * 1 2 3 32 32 H 1.09005 * 109.47124 * 60.00809 * 1 2 3 33 33 H 1.09000 * 111.11558 * 88.09328 * 7 5 3 34 34 H 1.08991 * 111.01390 * 324.14737 * 7 5 3 35 35 H 1.09004 * 110.36949 * 278.11463 * 8 7 5 36 36 H 1.09000 * 110.36784 * 155.90278 * 8 7 5 37 37 H 0.97010 * 120.00095 * 359.97438 * 14 12 10 38 38 H 1.08999 * 109.46901 * 300.00445 * 15 14 12 39 39 H 1.09000 * 109.46637 * 59.99661 * 15 14 12 40 40 H 1.09001 * 109.46954 * 69.36726 * 17 16 15 41 41 H 1.09001 * 109.47437 * 189.37156 * 17 16 15 42 42 H 1.08997 * 109.47020 * 309.37177 * 17 16 15 43 43 H 1.09006 * 109.47201 * 59.99585 * 18 16 15 44 44 H 1.08997 * 109.47344 * 180.02562 * 18 16 15 45 45 H 1.09004 * 109.46849 * 300.00177 * 18 16 15 46 46 H 0.96992 * 120.00240 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.47281 * 58.53880 * 29 27 9 48 48 H 1.08997 * 109.47007 * 178.54351 * 29 27 9 49 49 H 1.09002 * 109.46406 * 298.54043 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9795 0.7379 -0.8531 7 6 4.1450 0.7239 1.3340 8 6 5.4905 1.4863 1.4236 9 7 5.2012 2.8309 0.8929 10 6 5.8905 3.9532 1.1788 11 8 5.5617 5.0104 0.6816 12 6 7.0594 3.8959 2.1081 13 8 7.3878 2.8390 2.6056 14 7 7.7483 5.0184 2.3945 15 6 8.8940 4.9624 3.3059 16 6 9.4925 6.3620 3.4594 17 6 9.9528 6.8726 2.0925 18 6 8.4344 7.3097 4.0279 19 6 10.6705 6.3045 4.3974 20 1 10.9765 5.3601 4.8228 21 6 11.3578 7.4574 4.7126 22 7 12.5333 7.3832 5.2978 23 14 10.6193 9.1250 4.3085 24 1 9.6972 9.5351 5.3979 25 1 11.7059 10.1285 4.1757 26 1 9.8679 9.0371 3.0307 27 6 4.0360 2.7449 0.0004 28 1 3.2390 3.3912 0.3681 29 6 4.4336 3.1639 -1.4164 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 4.3088 -0.3522 1.2761 34 1 3.4974 0.9743 2.1742 35 1 6.2475 0.9928 0.8140 36 1 5.8218 1.5507 2.4600 37 1 7.4856 5.8634 1.9970 38 1 8.5660 4.5990 4.2798 39 1 9.6476 4.2869 2.9010 40 1 9.0825 7.0725 1.4674 41 1 10.5259 7.7907 2.2217 42 1 10.5778 6.1183 1.6146 43 1 8.1065 6.9459 5.0018 44 1 8.8607 8.3069 4.1369 45 1 7.5820 7.3513 3.3498 46 1 13.0170 8.1943 5.5191 47 1 5.2359 2.5187 -1.7745 48 1 3.5717 3.0730 -2.0774 49 1 4.7764 4.1986 -1.4065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261416068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:41 Heat of formation + Delta-G solvation = -153.766300 kcal Electronic energy + Delta-G solvation = -30537.887464 eV Core-core repulsion = 26272.424304 eV Total energy + Delta-G solvation = -4265.463160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.26464 -41.51331 -40.12055 -38.72602 -38.44538 -37.50825 -35.11470 -33.52497 -33.22587 -32.49059 -29.22613 -28.31441 -28.01983 -27.27002 -27.04005 -25.61730 -23.59938 -23.15618 -21.47490 -21.08311 -20.51431 -19.20724 -18.75571 -18.13027 -18.02692 -17.70496 -17.32822 -17.12625 -17.08439 -16.43036 -16.26376 -15.67233 -15.27928 -15.02325 -14.87616 -14.69604 -14.58890 -14.56465 -14.37724 -14.17478 -14.03153 -13.81546 -13.78203 -13.44988 -13.12451 -12.98564 -12.90645 -12.74076 -12.52238 -12.39544 -12.20933 -12.09551 -11.98299 -11.90867 -11.81875 -11.78767 -11.50334 -11.09205 -10.63446 -10.58436 -10.40462 -10.21366 -9.90878 -8.30110 -6.30903 0.32323 1.03669 1.07730 1.36235 1.38700 1.49525 1.68704 2.11079 2.34127 2.45611 3.05595 3.09352 3.29232 3.40175 3.67432 3.99314 4.01462 4.08612 4.15209 4.24930 4.29718 4.31621 4.33872 4.37865 4.45815 4.60682 4.69218 4.73508 4.77030 4.81159 4.84293 4.90332 4.91034 4.93065 5.03489 5.04029 5.06524 5.12297 5.22451 5.30029 5.32538 5.46980 5.67629 5.75010 5.96742 6.20981 6.30241 6.60150 6.63876 6.73678 6.92972 7.33819 8.86232 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.002202 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.615389 B =12710.040624 C =13050.419322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.477 3.523 4 O -0.535 6.535 5 C -0.086 4.086 6 H 0.160 0.840 7 C -0.109 4.109 8 C 0.091 3.909 9 N -0.586 5.586 10 C 0.524 3.476 11 O -0.540 6.540 12 C 0.504 3.496 13 O -0.536 6.536 14 N -0.684 5.684 15 C 0.155 3.845 16 C 0.025 3.975 17 C -0.143 4.143 18 C -0.150 4.150 19 C -0.511 4.511 20 H 0.038 0.962 21 C 0.020 3.980 22 N -0.941 5.941 23 Si 0.938 3.062 24 H -0.283 1.283 25 H -0.315 1.315 26 H -0.212 1.212 27 C 0.139 3.861 28 H 0.076 0.924 29 C -0.158 4.158 30 H 0.134 0.866 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.414 0.586 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.264 0.736 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.774 -16.927 -14.549 32.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.321 3.679 4 O -0.425 6.425 5 C -0.105 4.105 6 H 0.178 0.822 7 C -0.147 4.147 8 C -0.030 4.030 9 N -0.320 5.320 10 C 0.307 3.693 11 O -0.418 6.418 12 C 0.285 3.715 13 O -0.414 6.414 14 N -0.336 5.336 15 C 0.032 3.968 16 C 0.024 3.976 17 C -0.201 4.201 18 C -0.207 4.207 19 C -0.549 4.549 20 H 0.056 0.944 21 C -0.178 4.178 22 N -0.580 5.580 23 Si 0.768 3.232 24 H -0.210 1.210 25 H -0.244 1.244 26 H -0.136 1.136 27 C 0.036 3.964 28 H 0.094 0.906 29 C -0.216 4.216 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.252 0.748 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.751 -16.688 -14.363 32.386 hybrid contribution -0.012 1.607 0.349 1.645 sum -23.763 -15.080 -14.014 31.440 Atomic orbital electron populations 1.23584 0.74641 1.05885 1.02495 1.86489 1.24922 1.31948 1.83416 1.23483 0.91794 0.81410 0.71261 1.90704 1.67734 1.37506 1.46539 1.22190 0.87341 0.96459 1.04495 0.82232 1.22954 0.94629 1.03045 0.94042 1.22896 0.98093 0.79872 1.02184 1.48358 1.29806 1.08644 1.45185 1.19768 0.83783 0.83413 0.82350 1.90745 1.68543 1.29520 1.52977 1.20066 0.84076 0.84693 0.82679 1.90686 1.68324 1.29362 1.53011 1.45987 1.30495 1.10823 1.46331 1.21304 0.85541 0.98134 0.91794 1.18693 0.93246 0.91577 0.94079 1.22243 1.00312 1.00779 0.96724 1.22327 0.98495 0.98629 1.01236 1.20936 1.12088 0.94490 1.27403 0.94394 1.25761 0.94209 1.03042 0.94749 1.70086 1.13604 1.29833 1.44501 0.86423 0.76744 0.78784 0.81215 1.21043 1.24432 1.13569 1.21585 0.87307 0.95999 0.91488 0.90611 1.22108 1.02925 1.02463 0.94085 0.84783 0.92232 0.91875 0.84512 0.90462 0.88577 0.88719 0.74794 0.92199 0.92200 0.92497 0.93548 0.93409 0.92901 0.94696 0.91724 0.92673 0.90400 0.90049 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.41 16 2 O -0.35 -4.24 10.56 -51.37 -0.54 -4.79 16 3 C 0.48 7.40 7.26 71.24 0.52 7.92 16 4 O -0.54 -12.18 15.17 21.97 0.33 -11.85 16 5 C -0.09 -1.01 2.98 -10.25 -0.03 -1.04 16 6 H 0.16 0.91 7.85 -2.39 -0.02 0.90 16 7 C -0.11 -1.11 6.54 32.09 0.21 -0.90 16 8 C 0.09 1.49 6.06 86.86 0.53 2.02 16 9 N -0.59 -13.05 3.06 -789.63 -2.42 -15.47 16 10 C 0.52 15.02 7.71 87.27 0.67 15.69 16 11 O -0.54 -17.58 15.52 -3.26 -0.05 -17.63 16 12 C 0.50 15.80 7.86 87.27 0.69 16.48 16 13 O -0.54 -17.90 13.77 -3.23 -0.04 -17.95 16 14 N -0.68 -22.19 5.00 -464.42 -2.32 -24.51 16 15 C 0.16 5.91 4.49 86.38 0.39 6.30 16 16 C 0.03 1.07 0.50 -52.93 -0.03 1.04 16 17 C -0.14 -5.58 7.53 71.98 0.54 -5.04 16 18 C -0.15 -5.82 7.52 71.98 0.54 -5.28 16 19 C -0.51 -27.47 8.62 25.60 0.22 -27.25 16 20 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 21 C 0.02 1.14 5.32 84.65 0.45 1.59 16 22 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 23 Si 0.94 43.25 22.79 68.60 1.56 44.81 16 24 H -0.28 -12.85 7.10 99.48 0.71 -12.15 16 25 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 26 H -0.21 -8.50 4.65 99.48 0.46 -8.03 16 27 C 0.14 2.65 2.88 45.34 0.13 2.78 16 28 H 0.08 1.87 6.81 -2.39 -0.02 1.85 16 29 C -0.16 -2.76 9.10 71.98 0.66 -2.11 16 30 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.06 0.54 8.13 -2.38 -0.02 0.52 16 33 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.91 8.04 -2.39 -0.02 0.90 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.95 6.15 -2.39 -0.01 1.93 16 37 H 0.41 12.65 5.73 -92.70 -0.53 12.12 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 1.85 7.13 -2.39 -0.02 1.83 16 41 H 0.05 1.91 4.30 -2.39 -0.01 1.90 16 42 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16 43 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.03 1.42 2.25 -2.39 -0.01 1.41 16 45 H 0.06 2.09 6.86 -2.39 -0.02 2.07 16 46 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.05 1.22 6.88 -2.39 -0.02 1.20 16 Total: -1.00 -72.30 381.46 3.70 -68.60 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.20 Total: 22.41 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 6.68 Total: 13.62 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -4.44 Total: -97.24 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.30 Total: -52.21 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.56 Total: 44.81 kcal Total: -72.30 3.70 -68.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261416068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.163 kcal (2) G-P(sol) polarization free energy of solvation -72.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds