Wall clock time and date at job start Tue Mar 31 2020 23:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.67469 * 2 1 4 4 C 1.54998 * 110.61960 * 237.03825 * 2 1 3 5 5 C 1.54817 * 102.12466 * 204.49339 * 4 2 1 6 6 H 1.09000 * 110.48534 * 262.18793 * 5 4 2 7 7 C 1.52999 * 110.48450 * 139.67068 * 5 4 2 8 8 N 1.46496 * 109.47338 * 66.45664 * 7 5 4 9 9 C 1.34770 * 120.00258 * 179.97438 * 8 7 5 10 10 O 1.21350 * 120.00172 * 359.97438 * 9 8 7 11 11 C 1.49458 * 120.00435 * 179.97438 * 9 8 7 12 12 O 1.21350 * 119.99393 * 0.02562 * 11 9 8 13 13 N 1.34771 * 120.00018 * 180.02562 * 11 9 8 14 14 C 1.47422 * 125.65175 * 0.02562 * 13 11 9 15 15 C 1.54910 * 104.83501 * 204.09454 * 14 13 11 16 16 C 1.55160 * 101.57905 * 322.98966 * 15 14 13 17 17 O 1.42896 * 110.71893 * 277.13837 * 16 15 14 18 18 C 1.50698 * 110.71999 * 154.04205 * 16 15 14 19 19 H 1.08004 * 120.00096 * 0.02562 * 18 16 15 20 20 C 1.37880 * 120.00257 * 179.97438 * 18 16 15 21 21 N 1.31514 * 119.99791 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00317 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47150 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47574 * 119.99948 * 22 20 18 25 25 H 1.48498 * 109.47120 * 240.00407 * 22 20 18 26 26 C 1.47029 * 125.64594 * 179.72131 * 13 11 9 27 27 C 1.54098 * 104.18694 * 20.85885 * 5 4 2 28 28 H 1.09000 * 109.87975 * 242.45524 * 27 5 4 29 29 C 1.53005 * 109.87602 * 121.45469 * 27 5 4 30 30 O 1.43750 * 107.29667 * 2.03300 * 27 5 4 31 31 H 1.08996 * 109.46856 * 182.96084 * 1 2 3 32 32 H 1.09003 * 109.47008 * 302.96223 * 1 2 3 33 33 H 1.08996 * 109.46944 * 62.96078 * 1 2 3 34 34 H 1.09002 * 110.90913 * 86.27554 * 4 2 1 35 35 H 1.08997 * 110.90321 * 322.70671 * 4 2 1 36 36 H 1.09000 * 109.46641 * 186.45489 * 7 5 4 37 37 H 1.08997 * 109.47563 * 306.45237 * 7 5 4 38 38 H 0.97005 * 119.99965 * 359.97438 * 8 7 5 39 39 H 1.09007 * 110.36748 * 322.93313 * 14 13 11 40 40 H 1.09000 * 110.36569 * 85.25186 * 14 13 11 41 41 H 1.08997 * 111.00800 * 81.06112 * 15 14 13 42 42 H 1.08998 * 111.00446 * 204.92237 * 15 14 13 43 43 H 0.96707 * 113.99640 * 179.97438 * 17 16 15 44 44 H 0.96997 * 120.00108 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.87838 * 298.39049 * 26 13 11 46 46 H 1.08994 * 109.88501 * 59.55221 * 26 13 11 47 47 H 1.08994 * 109.47212 * 59.99770 * 29 27 5 48 48 H 1.08998 * 109.46972 * 180.02562 * 29 27 5 49 49 H 1.08999 * 109.47104 * 299.99894 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4795 -1.2175 -0.7241 6 1 4.2409 -0.5343 -1.1005 7 6 3.7858 -2.6516 -1.1603 8 7 3.9009 -2.7042 -2.6198 9 6 4.1698 -3.8738 -3.2329 10 8 4.3170 -4.8835 -2.5760 11 6 4.2867 -3.9275 -4.7220 12 8 4.1400 -2.9178 -5.3788 13 7 4.5550 -5.0973 -5.3350 14 6 4.7551 -6.3939 -4.6625 15 6 5.6097 -7.2258 -5.6511 16 6 5.0254 -6.7816 -7.0181 17 8 3.8408 -7.5194 -7.3252 18 6 6.0491 -6.9405 -8.1125 19 1 7.0327 -7.3215 -7.8807 20 6 5.7296 -6.6007 -9.4100 21 7 4.5317 -6.1373 -9.6924 22 14 6.9983 -6.7984 -10.7667 23 1 8.2583 -7.3343 -10.1919 24 1 6.4827 -7.7391 -11.7934 25 1 7.2629 -5.4782 -11.3932 26 6 4.6905 -5.2930 -6.7859 27 6 3.3846 -1.1262 0.8112 28 1 4.0885 -0.3813 1.1825 29 6 3.6937 -2.4894 1.4335 30 8 2.0394 -0.7354 1.1338 31 1 -0.3633 -1.0263 0.0531 32 1 -0.3633 0.5592 0.8623 33 1 -0.3633 0.4672 -0.9153 34 1 2.1509 -0.1475 -2.0950 35 1 1.4546 -1.6602 -1.4263 36 1 4.7240 -2.9758 -0.7099 37 1 2.9803 -3.3101 -0.8355 38 1 3.7837 -1.8970 -3.1449 39 1 5.2896 -6.2552 -3.7226 40 1 3.7964 -6.8817 -4.4862 41 1 6.6645 -6.9625 -5.5730 42 1 5.4624 -8.2939 -5.4918 43 1 3.4359 -7.2793 -8.1700 44 1 4.3070 -5.8978 -10.6051 45 1 3.7541 -5.0398 -7.2831 46 1 5.4973 -4.6691 -7.1704 47 1 4.7011 -2.7968 1.1530 48 1 3.6243 -2.4174 2.5189 49 1 2.9754 -3.2251 1.0719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261473610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:07 Heat of formation + Delta-G solvation = -164.200203 kcal Electronic energy + Delta-G solvation = -30473.690593 eV Core-core repulsion = 26207.774984 eV Total energy + Delta-G solvation = -4265.915608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70372 -40.04851 -38.45081 -37.23616 -35.68544 -34.31758 -33.22906 -32.42647 -32.20332 -30.17719 -29.18494 -28.01602 -27.09544 -25.56888 -24.22075 -23.40707 -21.84372 -21.64283 -20.47135 -19.73701 -19.30044 -17.40573 -17.29423 -17.20049 -16.46785 -16.17611 -15.91418 -15.53533 -15.31033 -15.01216 -14.86704 -14.55940 -14.17602 -13.90328 -13.53596 -13.10804 -13.05479 -13.01192 -12.96568 -12.76074 -12.58681 -12.38987 -12.35863 -12.23494 -11.78611 -11.63902 -11.56063 -11.23418 -11.16548 -11.11690 -11.05734 -10.98177 -10.79617 -10.58760 -10.50022 -10.18468 -9.99936 -9.37885 -9.27771 -9.15009 -8.69682 -8.36592 -8.04961 -6.33940 -4.42360 1.74140 2.56880 3.17467 3.26452 3.30128 3.38580 3.55001 3.81187 4.08920 4.12518 4.23614 4.43337 4.55519 4.67402 4.74684 4.85264 4.94341 4.97198 5.00697 5.10673 5.20011 5.30053 5.32420 5.42545 5.48857 5.52459 5.61543 5.71175 5.73933 5.81117 5.82233 5.86133 5.90193 6.02692 6.13464 6.33848 6.49012 6.60795 6.73567 6.77204 6.81007 7.13472 7.19096 7.30634 7.69214 7.82629 7.97591 7.99730 8.39244 8.61825 9.26923 9.40238 10.73938 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.002200 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.152018 B =12726.220691 C =13145.635621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.135 4.135 6 H 0.093 0.907 7 C 0.127 3.873 8 N -0.708 5.708 9 C 0.511 3.489 10 O -0.516 6.516 11 C 0.506 3.494 12 O -0.540 6.540 13 N -0.574 5.574 14 C 0.099 3.901 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.535 4.535 19 H 0.069 0.931 20 C 0.069 3.931 21 N -0.897 5.897 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.098 3.902 27 C 0.085 3.915 28 H 0.073 0.927 29 C -0.161 4.161 30 O -0.370 6.370 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.411 0.589 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.386 0.614 44 H 0.271 0.729 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 11.126 18.480 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.088 0.912 4 C -0.188 4.188 5 C -0.154 4.154 6 H 0.111 0.889 7 C 0.004 3.996 8 N -0.362 5.362 9 C 0.293 3.707 10 O -0.391 6.391 11 C 0.288 3.712 12 O -0.419 6.419 13 N -0.306 5.306 14 C -0.023 4.023 15 C -0.159 4.159 16 C 0.207 3.793 17 O -0.395 6.395 18 C -0.573 4.573 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.536 5.536 22 Si 0.733 3.267 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.024 4.024 27 C 0.027 3.973 28 H 0.090 0.910 29 C -0.218 4.218 30 O -0.290 6.290 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.247 0.753 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.238 0.762 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.853 10.704 19.255 22.365 hybrid contribution 0.530 0.790 -1.824 2.057 sum -3.322 11.494 17.431 21.143 Atomic orbital electron populations 1.21774 0.92993 1.03169 1.02476 1.23111 0.95349 0.95164 0.84855 0.91177 1.23342 0.95300 1.01376 0.98741 1.22839 0.98851 0.97180 0.96493 0.88871 1.21650 1.02714 0.95847 0.79378 1.45774 1.71478 1.11187 1.07803 1.20405 0.77466 0.83649 0.89225 1.90704 1.47924 1.33628 1.66856 1.19570 0.80380 0.83694 0.87591 1.90720 1.51365 1.33482 1.66323 1.48686 1.64190 1.07288 1.10408 1.22647 1.00516 0.82690 0.96480 1.22832 0.98598 0.99640 0.94844 1.19509 0.84100 0.84439 0.91220 1.86096 1.42999 1.65684 1.44705 1.21573 0.99337 1.44314 0.92121 0.91290 1.25095 0.95837 0.93376 0.99063 1.69579 1.19686 1.43458 1.20897 0.86315 0.81260 0.77926 0.81231 1.19539 1.20692 1.20759 1.23280 1.01882 1.01647 0.75542 1.22608 0.85073 0.97241 0.92413 0.90956 1.22086 1.02386 0.95708 1.01579 1.88921 1.27632 1.73489 1.38975 0.91630 0.91889 0.90964 0.89739 0.89787 0.90417 0.90432 0.75316 0.89500 0.91349 0.90516 0.90260 0.76209 0.91911 0.91182 0.90982 0.90672 0.91779 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.66 37.16 0.36 -0.63 16 2 C 0.07 0.55 3.98 -25.68 -0.10 0.45 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.15 -1.12 5.82 -24.72 -0.14 -1.26 16 5 C -0.13 -1.01 3.11 -89.09 -0.28 -1.28 16 6 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 7 C 0.13 1.22 3.80 -4.04 -0.02 1.20 16 8 N -0.71 -8.60 5.39 -60.73 -0.33 -8.93 16 9 C 0.51 8.28 7.86 -11.58 -0.09 8.18 16 10 O -0.52 -9.00 13.78 5.50 0.08 -8.92 16 11 C 0.51 9.88 7.91 -11.58 -0.09 9.79 16 12 O -0.54 -11.45 16.80 5.50 0.09 -11.36 16 13 N -0.57 -12.01 3.33 -171.01 -0.57 -12.58 16 14 C 0.10 1.90 6.05 -2.53 -0.02 1.89 16 15 C -0.12 -2.47 6.23 -24.58 -0.15 -2.63 16 16 C 0.25 5.97 0.86 -89.93 -0.08 5.90 16 17 O -0.58 -14.75 13.07 -35.23 -0.46 -15.21 16 18 C -0.54 -13.79 8.12 -34.44 -0.28 -14.07 16 19 H 0.07 1.75 7.76 -52.48 -0.41 1.34 16 20 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 21 N -0.90 -23.41 10.97 55.43 0.61 -22.80 16 22 Si 0.91 20.14 29.54 -169.99 -5.02 15.11 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.10 2.32 5.54 -3.06 -0.02 2.30 16 27 C 0.08 0.66 4.06 -26.16 -0.11 0.55 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 C -0.16 -1.18 8.40 37.16 0.31 -0.87 16 30 O -0.37 -3.53 10.89 -35.23 -0.38 -3.91 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.72 7.74 -51.93 -0.40 0.31 16 36 H 0.08 0.74 6.65 -51.93 -0.35 0.39 16 37 H 0.08 0.81 6.86 -51.93 -0.36 0.45 16 38 H 0.41 4.60 7.80 -40.82 -0.32 4.28 16 39 H 0.09 1.56 6.16 -51.92 -0.32 1.24 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.39 9.97 6.98 45.56 0.32 10.28 16 44 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 45 H 0.07 1.79 8.07 -51.93 -0.42 1.37 16 46 H 0.07 1.82 7.82 -51.93 -0.41 1.42 16 47 H 0.07 0.49 6.80 -51.93 -0.35 0.13 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.57 6.76 -51.93 -0.35 0.22 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -29.35 388.92 -8.06 -37.40 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -7.14 Total: 14.14 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -0.79 Total: 11.20 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.29 Total: -44.31 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.68 Total: -39.40 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.35 -8.06 -37.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261473610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.796 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds