Wall clock time and date at job start Tue Mar 31 2020 23:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.27691 * 2 1 4 4 C 1.54945 * 110.31454 * 237.90751 * 2 1 3 5 5 C 1.55300 * 100.94619 * 204.64041 * 4 2 1 6 6 H 1.09001 * 110.84511 * 275.94267 * 5 4 2 7 7 C 1.52994 * 110.84607 * 152.32388 * 5 4 2 8 8 N 1.46497 * 109.47478 * 66.45503 * 7 5 4 9 9 C 1.34782 * 120.00227 * 179.97438 * 8 7 5 10 10 O 1.21348 * 119.99818 * 359.97438 * 9 8 7 11 11 C 1.49447 * 119.99724 * 179.97438 * 9 8 7 12 12 O 1.21348 * 120.00458 * 0.02562 * 11 9 8 13 13 N 1.34782 * 119.99724 * 180.02562 * 11 9 8 14 14 C 1.47430 * 125.64686 * 0.02700 * 13 11 9 15 15 C 1.54910 * 104.82910 * 204.08944 * 14 13 11 16 16 C 1.55159 * 101.58230 * 322.99145 * 15 14 13 17 17 O 1.42899 * 110.71972 * 276.95995 * 16 15 14 18 18 C 1.50699 * 110.72015 * 153.86731 * 16 15 14 19 19 H 1.07998 * 119.99770 * 359.97438 * 18 16 15 20 20 C 1.37876 * 120.00060 * 180.02562 * 18 16 15 21 21 N 1.31519 * 119.99952 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99940 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47355 * 59.99709 * 22 20 18 24 24 H 1.48505 * 109.46709 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46849 * 299.99454 * 22 20 18 26 26 C 1.47020 * 125.64849 * 179.71256 * 13 11 9 27 27 C 1.54384 * 102.25022 * 34.13369 * 5 4 2 28 28 H 1.08997 * 109.82905 * 98.15891 * 27 5 4 29 29 C 1.53005 * 109.82597 * 219.03722 * 27 5 4 30 30 O 1.43234 * 107.58948 * 338.63933 * 27 5 4 31 31 H 1.09002 * 109.47153 * 182.08973 * 1 2 3 32 32 H 1.09001 * 109.46832 * 62.09164 * 1 2 3 33 33 H 1.09004 * 109.47261 * 302.09145 * 1 2 3 34 34 H 1.08999 * 111.12054 * 322.56644 * 4 2 1 35 35 H 1.09011 * 111.12251 * 86.71875 * 4 2 1 36 36 H 1.09009 * 109.47300 * 186.45645 * 7 5 4 37 37 H 1.08997 * 109.47194 * 306.44986 * 7 5 4 38 38 H 0.97004 * 119.99644 * 0.02562 * 8 7 5 39 39 H 1.08999 * 110.36379 * 322.92979 * 14 13 11 40 40 H 1.08996 * 110.36376 * 85.25059 * 14 13 11 41 41 H 1.08997 * 111.00580 * 81.06353 * 15 14 13 42 42 H 1.09000 * 111.00186 * 204.87882 * 15 14 13 43 43 H 0.96703 * 114.00359 * 179.97438 * 17 16 15 44 44 H 0.96999 * 119.99719 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.88781 * 298.40018 * 26 13 11 46 46 H 1.09001 * 109.87852 * 59.56436 * 26 13 11 47 47 H 1.09000 * 109.47152 * 60.00405 * 29 27 5 48 48 H 1.09003 * 109.46459 * 179.97438 * 29 27 5 49 49 H 1.08996 * 109.47500 * 300.00058 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0679 -0.7720 -1.2310 5 6 3.4700 -1.2019 -0.7200 6 1 4.1974 -0.4032 -0.8653 7 6 3.9285 -2.4898 -1.4068 8 7 4.1485 -2.2317 -2.8319 9 6 4.5593 -3.2277 -3.6417 10 8 4.7473 -4.3383 -3.1901 11 6 4.7832 -2.9644 -5.0956 12 8 4.5956 -1.8538 -5.5471 13 7 5.1934 -3.9606 -5.9055 14 6 5.4578 -5.3507 -5.4916 15 6 6.4474 -5.8982 -6.5502 16 6 5.9228 -5.2237 -7.8453 17 8 4.8332 -5.9661 -8.3963 18 6 7.0307 -5.0769 -8.8563 19 1 8.0259 -5.4242 -8.6210 20 6 6.7740 -4.4983 -10.0812 21 7 5.5622 -4.0749 -10.3674 22 14 8.1471 -4.3170 -11.3346 23 1 8.6851 -5.6580 -11.6770 24 1 7.6156 -3.6695 -12.5608 25 1 9.2320 -3.4796 -10.7627 26 6 5.4453 -3.8426 -7.3492 27 6 3.2112 -1.4427 0.7829 28 1 3.0624 -2.5067 0.9666 29 6 4.4001 -0.9360 1.6019 30 8 2.0286 -0.7177 1.1400 31 1 -0.3633 -1.0270 0.0375 32 1 -0.3633 0.4810 -0.9082 33 1 -0.3634 0.5460 0.8707 34 1 1.4471 -1.6402 -1.4522 35 1 2.1497 -0.1184 -2.0996 36 1 4.8578 -2.8331 -0.9520 37 1 3.1623 -3.2563 -1.2904 38 1 3.9993 -1.3437 -3.1926 39 1 5.9119 -5.3717 -4.5010 40 1 4.5349 -5.9307 -5.4992 41 1 7.4676 -5.5831 -6.3312 42 1 6.3827 -6.9840 -6.6207 43 1 4.4685 -5.5861 -9.2073 44 1 5.3815 -3.6682 -11.2293 45 1 4.5273 -3.5588 -7.8637 46 1 6.2199 -3.0974 -7.5306 47 1 4.5339 0.1314 1.4260 48 1 4.2111 -1.1084 2.6615 49 1 5.3019 -1.4695 1.3017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261473611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:09 Heat of formation + Delta-G solvation = -169.439395 kcal Electronic energy + Delta-G solvation = -30290.837685 eV Core-core repulsion = 26024.694889 eV Total energy + Delta-G solvation = -4266.142797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.65246 -40.05934 -38.47902 -37.24848 -35.65427 -34.30522 -33.17022 -32.44634 -32.20707 -30.18724 -29.37787 -28.01904 -27.16822 -25.68204 -24.09207 -23.12022 -21.92065 -21.36020 -21.00706 -19.75585 -19.36879 -17.54432 -17.28197 -17.23789 -16.49814 -16.01855 -15.97750 -15.35241 -15.20272 -14.98186 -14.72533 -14.55578 -14.13167 -14.05320 -13.62146 -13.30728 -13.10031 -13.02541 -13.00252 -12.93853 -12.67376 -12.37694 -12.21772 -12.12245 -11.85301 -11.80461 -11.55585 -11.28674 -11.25389 -11.11881 -11.07924 -10.98801 -10.80386 -10.60008 -10.54430 -10.19456 -9.87748 -9.38490 -9.33298 -9.16901 -8.69353 -8.37733 -8.06065 -6.33938 -4.42560 1.72021 2.53499 3.19947 3.25435 3.27620 3.33899 3.53168 3.77120 4.04222 4.15425 4.23197 4.35158 4.61277 4.70982 4.73681 4.80136 4.94128 4.94971 4.99804 5.03578 5.18753 5.27969 5.35994 5.40858 5.47999 5.52322 5.58831 5.64030 5.77001 5.81526 5.83053 5.84316 5.86709 6.01324 6.10079 6.31914 6.48217 6.70399 6.72773 6.76475 6.80195 7.11302 7.18092 7.29650 7.68789 7.80620 7.96365 7.98585 8.37649 8.60913 9.26524 9.39754 10.73869 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.002136 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.762506 B =13107.375754 C =13413.708433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.077 3.923 3 H 0.071 0.929 4 C -0.151 4.151 5 C -0.134 4.134 6 H 0.096 0.904 7 C 0.131 3.869 8 N -0.707 5.707 9 C 0.512 3.488 10 O -0.515 6.515 11 C 0.506 3.494 12 O -0.539 6.539 13 N -0.574 5.574 14 C 0.099 3.901 15 C -0.121 4.121 16 C 0.249 3.751 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.098 3.902 27 C 0.087 3.913 28 H 0.084 0.916 29 C -0.163 4.163 30 O -0.374 6.374 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.412 0.588 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.386 0.614 44 H 0.272 0.728 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 6.910 19.729 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 H 0.088 0.912 4 C -0.189 4.189 5 C -0.153 4.153 6 H 0.114 0.886 7 C 0.008 3.992 8 N -0.361 5.361 9 C 0.293 3.707 10 O -0.391 6.391 11 C 0.288 3.712 12 O -0.419 6.419 13 N -0.306 5.306 14 C -0.023 4.023 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.733 3.267 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.023 4.023 27 C 0.029 3.971 28 H 0.102 0.898 29 C -0.221 4.221 30 O -0.294 6.294 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.248 0.752 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.238 0.762 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.934 6.436 20.419 22.217 hybrid contribution 0.582 1.053 -1.602 2.004 sum -5.352 7.490 18.817 20.948 Atomic orbital electron populations 1.21892 0.93574 1.02997 1.02442 1.22938 0.94984 0.95470 0.84669 0.91151 1.23463 0.95286 1.01444 0.98659 1.23059 0.98417 0.98462 0.95353 0.88562 1.21334 1.01856 0.96248 0.79798 1.45702 1.67965 1.13870 1.08602 1.20419 0.77717 0.84748 0.87821 1.90708 1.49154 1.22415 1.76776 1.19549 0.80522 0.84837 0.86311 1.90721 1.52486 1.22318 1.76326 1.48693 1.60898 1.09991 1.10982 1.22650 0.99714 0.80864 0.99119 1.22831 0.97827 1.00807 0.94442 1.19492 0.85308 0.84647 0.89769 1.86095 1.51563 1.55466 1.46339 1.21498 0.96016 1.40618 0.99379 0.91397 1.25090 0.96187 0.93689 0.98345 1.69563 1.19896 1.40357 1.23825 0.86422 0.81649 0.78549 0.80083 1.19925 1.21045 1.20003 1.23284 1.01193 1.02546 0.75309 1.22607 0.85860 0.96660 0.91975 0.89791 1.22162 0.97146 1.01899 1.00853 1.88455 1.41970 1.64773 1.34222 0.91804 0.91084 0.91919 0.89699 0.89458 0.90608 0.90645 0.75206 0.89507 0.91338 0.90517 0.90256 0.76209 0.91790 0.91175 0.90954 0.92132 0.91724 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.62 37.16 0.36 -0.66 16 2 C 0.08 0.58 4.07 -25.71 -0.10 0.48 16 3 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 4 C -0.15 -1.10 5.73 -24.49 -0.14 -1.24 16 5 C -0.13 -0.98 2.59 -88.68 -0.23 -1.21 16 6 H 0.10 0.65 7.85 -51.93 -0.41 0.24 16 7 C 0.13 1.21 4.97 -4.05 -0.02 1.19 16 8 N -0.71 -8.40 5.40 -60.73 -0.33 -8.73 16 9 C 0.51 8.18 7.86 -11.58 -0.09 8.09 16 10 O -0.52 -8.91 13.78 5.50 0.08 -8.83 16 11 C 0.51 9.81 7.91 -11.58 -0.09 9.72 16 12 O -0.54 -11.36 16.80 5.50 0.09 -11.27 16 13 N -0.57 -11.94 3.33 -171.02 -0.57 -12.51 16 14 C 0.10 1.89 6.06 -2.53 -0.02 1.87 16 15 C -0.12 -2.46 6.23 -24.58 -0.15 -2.61 16 16 C 0.25 5.97 0.86 -89.93 -0.08 5.89 16 17 O -0.58 -14.70 13.08 -35.23 -0.46 -15.17 16 18 C -0.54 -13.80 8.11 -34.44 -0.28 -14.08 16 19 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 20 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 21 N -0.90 -23.38 10.97 55.43 0.61 -22.77 16 22 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.10 2.31 5.54 -3.06 -0.02 2.30 16 27 C 0.09 0.67 3.76 -26.00 -0.10 0.57 16 28 H 0.08 0.63 7.81 -51.93 -0.41 0.22 16 29 C -0.16 -1.09 9.44 37.16 0.35 -0.74 16 30 O -0.37 -3.51 10.70 -35.23 -0.38 -3.89 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.67 7.93 -51.93 -0.41 0.25 16 35 H 0.09 0.58 8.14 -51.92 -0.42 0.15 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.41 4.51 7.81 -40.82 -0.32 4.19 16 39 H 0.09 1.55 6.16 -51.93 -0.32 1.23 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.39 9.93 6.98 45.56 0.32 10.25 16 44 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.07 1.79 8.07 -51.93 -0.42 1.37 16 46 H 0.07 1.83 7.81 -51.93 -0.41 1.42 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -29.17 395.14 -8.13 -37.29 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -7.40 Total: 13.58 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.70 Total: 11.26 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.29 Total: -44.01 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.67 Total: -39.16 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.17 -8.13 -37.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261473611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.145 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds