Wall clock time and date at job start Wed Apr 1 2020 00:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.47006 * 2 1 4 4 C 1.46499 * 119.99891 * 263.15825 * 3 2 1 5 5 C 1.52995 * 109.47267 * 269.99762 * 4 3 2 6 6 H 1.09003 * 110.45468 * 52.39930 * 5 4 3 7 7 C 1.54510 * 110.50920 * 174.99679 * 5 4 3 8 8 C 1.54486 * 104.05840 * 118.64717 * 7 5 4 9 9 O 1.44431 * 104.80115 * 23.98034 * 8 7 5 10 10 C 1.44426 * 105.27561 * 319.48475 * 9 8 7 11 11 C 1.34777 * 119.99679 * 83.16018 * 3 2 1 12 12 O 1.21357 * 119.99745 * 184.31191 * 11 3 2 13 13 C 1.49449 * 120.00204 * 4.31509 * 11 3 2 14 14 O 1.21344 * 120.00184 * 354.23950 * 13 11 3 15 15 N 1.34776 * 119.99900 * 174.23697 * 13 11 3 16 16 C 1.47024 * 125.65040 * 359.95758 * 15 13 11 17 17 C 1.54366 * 107.28993 * 181.12378 * 16 15 13 18 18 C 1.55151 * 102.92003 * 22.14399 * 17 16 15 19 19 O 1.42901 * 111.00841 * 82.63586 * 18 17 16 20 20 C 1.50706 * 111.00633 * 206.45138 * 18 17 16 21 21 H 1.08004 * 119.99590 * 356.54259 * 20 18 17 22 22 C 1.37870 * 120.00417 * 176.81986 * 20 18 17 23 23 N 1.31518 * 119.99956 * 359.97438 * 22 20 18 24 24 Si 1.86795 * 120.00268 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47153 * 59.99918 * 24 22 20 26 26 H 1.48501 * 109.47406 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46874 * 300.00022 * 24 22 20 28 28 C 1.47425 * 125.64978 * 179.97438 * 15 13 11 29 29 H 1.08988 * 109.47183 * 60.00155 * 1 2 3 30 30 H 1.08998 * 109.46631 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47078 * 299.99799 * 1 2 3 32 32 H 1.08995 * 109.47141 * 239.99889 * 2 1 3 33 33 H 1.09005 * 109.47412 * 119.99986 * 2 1 3 34 34 H 1.08998 * 109.47024 * 30.00576 * 4 3 2 35 35 H 1.09007 * 109.46790 * 149.99969 * 4 3 2 36 36 H 1.09000 * 110.51362 * 237.29381 * 7 5 4 37 37 H 1.08997 * 110.51527 * 0.02562 * 7 5 4 38 38 H 1.09001 * 110.36834 * 142.81045 * 8 7 5 39 39 H 1.08999 * 110.37633 * 265.04118 * 8 7 5 40 40 H 1.08990 * 110.37295 * 281.68036 * 10 9 8 41 41 H 1.09000 * 110.37126 * 159.34256 * 10 9 8 42 42 H 1.08993 * 109.88605 * 300.51522 * 16 15 13 43 43 H 1.09007 * 109.87867 * 61.52272 * 16 15 13 44 44 H 1.08994 * 110.70947 * 263.79534 * 17 16 15 45 45 H 1.09005 * 110.75143 * 140.50459 * 17 16 15 46 46 H 0.96701 * 113.99847 * 183.17871 * 19 18 17 47 47 H 0.96996 * 119.99924 * 180.02562 * 23 22 20 48 48 H 1.09002 * 110.36624 * 37.00323 * 28 15 13 49 49 H 1.09000 * 110.46379 * 274.72721 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4050 2.0215 -1.2597 5 6 3.8899 1.7670 -1.5264 6 1 4.1109 0.7014 -1.4645 7 6 4.2948 2.3245 -2.9094 8 6 5.3645 3.3910 -2.5856 9 8 5.9023 2.9971 -1.3043 10 6 4.7628 2.5626 -0.5307 11 6 2.1119 2.0629 1.1589 12 8 2.4414 3.2308 1.1510 13 6 1.8099 1.3804 2.4538 14 8 1.3804 0.2456 2.4557 15 7 2.0148 2.0254 3.6193 16 6 2.5294 3.3953 3.7616 17 6 2.6226 3.6956 5.2729 18 6 2.6898 2.2800 5.9044 19 8 4.0230 1.7668 5.8709 20 6 2.1534 2.2908 7.3128 21 1 1.8421 3.2209 7.7649 22 6 2.0655 1.1142 8.0260 23 7 2.4493 -0.0177 7.4772 24 14 1.4015 1.1277 9.7719 25 1 0.0113 1.6500 9.7687 26 1 1.4092 -0.2544 10.3152 27 1 2.2554 1.9981 10.6196 28 6 1.7602 1.4742 4.9627 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.8129 1.6060 -2.0751 35 1 2.2268 3.0947 -1.1915 36 1 4.7182 1.5350 -3.5303 37 1 3.4372 2.7817 -3.4029 38 1 6.1475 3.3853 -3.3438 39 1 4.9080 4.3786 -2.5199 40 1 4.2137 3.4228 -0.1480 41 1 5.0836 1.9206 0.2897 42 1 3.5177 3.4691 3.3080 43 1 1.8483 4.0988 3.2825 44 1 1.7359 4.2290 5.6153 45 1 3.5261 4.2620 5.4991 46 1 4.1060 0.8651 6.2104 47 1 2.3871 -0.8455 7.9789 48 1 2.0159 0.4150 4.9928 49 1 0.7170 1.6200 5.2431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261484843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:03 Heat of formation + Delta-G solvation = -147.348353 kcal Electronic energy + Delta-G solvation = -31821.439293 eV Core-core repulsion = 27556.254435 eV Total energy + Delta-G solvation = -4265.184857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80771 -39.51231 -38.41579 -37.32610 -36.18939 -34.21992 -33.11879 -32.22592 -30.58773 -30.24088 -29.26228 -27.96372 -26.76291 -25.45158 -23.90433 -23.28402 -22.66792 -21.52304 -20.38897 -19.66981 -18.81131 -17.27881 -17.16078 -16.91632 -16.47136 -15.99064 -15.65594 -15.44965 -15.21670 -15.11888 -14.81099 -14.40730 -14.09369 -13.90961 -13.64088 -13.13748 -13.10381 -12.97236 -12.89638 -12.63647 -12.35222 -12.25088 -12.17086 -11.78289 -11.66759 -11.57735 -11.47351 -11.21894 -11.15846 -11.02719 -10.89563 -10.83590 -10.57576 -10.53607 -10.51922 -10.21869 -9.85348 -9.39953 -9.04067 -8.74119 -8.70400 -8.43621 -7.88820 -6.32240 -4.41617 1.75821 2.51954 3.20247 3.26059 3.28065 3.52861 3.68477 3.85892 4.23454 4.34003 4.46640 4.56401 4.69195 4.83672 4.95474 4.99091 5.06925 5.16109 5.28175 5.35009 5.46610 5.47588 5.49369 5.51235 5.53594 5.66845 5.74494 5.78552 5.83918 5.86236 5.93928 6.03384 6.08389 6.25418 6.28505 6.44172 6.49793 6.67690 6.71635 6.78927 6.84234 7.09770 7.16912 7.28769 7.70336 7.77773 7.97686 8.04316 8.43763 8.62117 9.27448 9.38101 10.75042 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.003064 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.554746 B = 9137.495355 C =10004.761657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.091 3.909 3 N -0.590 5.590 4 C 0.122 3.878 5 C -0.140 4.140 6 H 0.085 0.915 7 C -0.147 4.147 8 C 0.044 3.956 9 O -0.377 6.377 10 C 0.046 3.954 11 C 0.510 3.490 12 O -0.517 6.517 13 C 0.506 3.494 14 O -0.529 6.529 15 N -0.572 5.572 16 C 0.111 3.889 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.582 6.582 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.092 3.908 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.383 0.617 47 H 0.271 0.729 48 H 0.088 0.912 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 2.204 -19.282 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.031 4.031 3 N -0.324 5.324 4 C 0.000 4.000 5 C -0.159 4.159 6 H 0.104 0.896 7 C -0.185 4.185 8 C -0.033 4.033 9 O -0.296 6.296 10 C -0.031 4.031 11 C 0.293 3.707 12 O -0.392 6.392 13 C 0.289 3.711 14 O -0.409 6.409 15 N -0.304 5.304 16 C -0.011 4.011 17 C -0.160 4.160 18 C 0.209 3.791 19 O -0.391 6.391 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.132 4.132 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.029 4.029 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.234 0.766 47 H 0.081 0.919 48 H 0.107 0.893 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.454 2.601 -19.477 19.656 hybrid contribution -0.815 -0.777 0.963 1.482 sum -1.269 1.824 -18.514 18.647 Atomic orbital electron populations 1.22050 0.95559 1.02282 1.01644 1.22167 0.95108 0.81091 1.04706 1.47873 1.63664 1.15139 1.05765 1.21621 0.93485 0.99705 0.85234 1.23007 0.95903 1.01667 0.95361 0.89615 1.22931 0.99544 0.99281 0.96733 1.23382 0.96325 0.97093 0.86492 1.89133 1.30163 1.84884 1.25398 1.23699 0.86707 0.98682 0.93971 1.20461 0.78198 0.86605 0.85420 1.90692 1.45785 1.15787 1.86954 1.19543 0.81148 0.86244 0.84168 1.90617 1.46428 1.17592 1.86238 1.48670 1.59404 1.16095 1.06225 1.22145 0.99046 0.82061 0.97870 1.22718 1.02138 0.98878 0.92223 1.19616 0.80276 0.87338 0.91918 1.86114 1.29316 1.36272 1.87373 1.21450 1.43683 0.94436 0.98003 0.91426 1.25081 0.94021 0.95233 0.98873 1.69636 1.47044 0.98753 1.37927 0.86438 0.79511 0.77254 0.83576 1.20009 1.21075 1.19954 1.23487 1.00711 1.01074 0.77619 0.93565 0.91549 0.91951 0.91288 0.86392 0.89868 0.89314 0.90464 0.90264 0.89324 0.92262 0.90031 0.89637 0.91427 0.91579 0.90396 0.90519 0.76604 0.91858 0.89325 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.74 37.16 0.36 -1.44 16 2 C 0.09 1.08 5.71 -4.04 -0.02 1.06 16 3 N -0.59 -7.58 2.46 -174.19 -0.43 -8.01 16 4 C 0.12 1.22 4.73 -4.04 -0.02 1.20 16 5 C -0.14 -1.39 3.35 -89.06 -0.30 -1.69 16 6 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.15 -1.13 6.74 -25.16 -0.17 -1.30 16 8 C 0.04 0.41 7.63 37.94 0.29 0.70 16 9 O -0.38 -5.09 11.65 -35.23 -0.41 -5.50 16 10 C 0.05 0.60 6.27 37.93 0.24 0.84 16 11 C 0.51 8.30 7.08 -11.59 -0.08 8.22 16 12 O -0.52 -8.85 11.57 5.49 0.06 -8.79 16 13 C 0.51 9.73 7.70 -11.59 -0.09 9.64 16 14 O -0.53 -10.62 12.12 5.50 0.07 -10.55 16 15 N -0.57 -11.79 3.33 -170.99 -0.57 -12.35 16 16 C 0.11 2.12 5.50 -3.04 -0.02 2.11 16 17 C -0.12 -2.46 6.13 -24.88 -0.15 -2.61 16 18 C 0.25 5.94 0.88 -89.61 -0.08 5.87 16 19 O -0.58 -14.72 13.17 -35.23 -0.46 -15.18 16 20 C -0.54 -13.71 8.25 -34.44 -0.28 -13.99 16 21 H 0.07 1.69 7.78 -52.48 -0.41 1.28 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 23 N -0.89 -23.22 10.69 55.43 0.59 -22.63 16 24 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 C 0.09 2.13 5.51 -2.52 -0.01 2.12 16 29 H 0.05 0.45 8.14 -51.94 -0.42 0.03 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.89 7.07 -51.93 -0.37 0.52 16 32 H 0.07 0.63 8.02 -51.93 -0.42 0.21 16 33 H 0.12 1.72 5.37 -51.93 -0.28 1.45 16 34 H 0.08 0.62 8.07 -51.93 -0.42 0.21 16 35 H 0.09 0.96 7.19 -51.92 -0.37 0.58 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.48 7.73 -51.93 -0.40 0.07 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.18 5.84 -51.93 -0.30 0.88 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.30 7.72 -51.93 -0.40 0.90 16 43 H 0.07 1.17 7.57 -51.93 -0.39 0.77 16 44 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.38 9.92 7.25 45.56 0.33 10.25 16 47 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 48 H 0.09 2.27 7.47 -51.93 -0.39 1.88 16 49 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -28.26 382.94 -8.00 -36.27 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -7.17 Total: 13.59 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -0.43 Total: 12.42 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.41 Total: -42.99 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.74 Total: -40.02 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.26 -8.00 -36.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261484843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.083 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds