Wall clock time and date at job start Wed Apr 1 2020 00:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46500 * 109.46855 * 2 1 4 4 C 1.36939 * 120.00035 * 275.30114 * 3 2 1 5 5 H 1.08003 * 119.99306 * 37.58851 * 4 3 2 6 6 C 1.38803 * 120.00392 * 217.58772 * 4 3 2 7 7 N 1.31618 * 119.99917 * 21.42370 * 6 4 3 8 8 Si 1.86801 * 120.00246 * 201.42814 * 6 4 3 9 9 H 1.48506 * 109.47076 * 59.99663 * 8 6 4 10 10 H 1.48495 * 109.47443 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46976 * 299.99994 * 8 6 4 12 12 C 1.46495 * 119.99845 * 95.31585 * 3 2 1 13 13 C 1.53007 * 109.46889 * 269.98919 * 12 3 2 14 14 C 1.53002 * 109.47329 * 180.02562 * 13 12 3 15 15 N 1.46498 * 109.47115 * 180.02562 * 14 13 12 16 16 C 1.34766 * 120.00164 * 179.72522 * 15 14 13 17 17 O 1.21285 * 119.99760 * 0.27340 * 16 15 14 18 18 C 1.50697 * 120.00273 * 180.27528 * 16 15 14 19 19 H 1.09008 * 109.47281 * 60.00292 * 18 16 15 20 20 C 1.53000 * 109.47340 * 299.99791 * 18 16 15 21 21 C 1.50707 * 109.47146 * 179.97438 * 18 16 15 22 22 C 1.38254 * 119.96672 * 239.99903 * 21 18 16 23 23 C 1.38207 * 120.07122 * 180.02562 * 22 21 18 24 24 C 1.38414 * 120.00218 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.04093 * 180.02562 * 24 23 22 26 26 C 1.38651 * 119.92643 * 0.02562 * 24 23 22 27 27 F 1.35097 * 120.03699 * 179.97438 * 26 24 23 28 28 C 1.38209 * 119.96216 * 59.73096 * 21 18 16 29 29 H 1.08999 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46914 * 300.00447 * 1 2 3 31 31 H 1.08999 * 109.46800 * 60.00011 * 1 2 3 32 32 H 1.08994 * 109.46798 * 239.99476 * 2 1 3 33 33 H 1.08999 * 109.46800 * 119.99989 * 2 1 3 34 34 H 0.97003 * 120.00026 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47243 * 149.99934 * 12 3 2 36 36 H 1.08994 * 109.47787 * 29.98925 * 12 3 2 37 37 H 1.09007 * 109.46479 * 60.00043 * 13 12 3 38 38 H 1.08999 * 109.47052 * 300.00988 * 13 12 3 39 39 H 1.08997 * 109.46721 * 60.00199 * 14 13 12 40 40 H 1.09001 * 109.46863 * 300.00321 * 14 13 12 41 41 H 0.97005 * 119.99568 * 0.02562 * 15 14 13 42 42 H 1.08997 * 109.46997 * 300.00079 * 20 18 16 43 43 H 1.09004 * 109.46544 * 59.99747 * 20 18 16 44 44 H 1.09001 * 109.47063 * 179.97438 * 20 18 16 45 45 H 1.08005 * 119.96581 * 359.97438 * 22 21 18 46 46 H 1.08001 * 120.00522 * 179.97438 * 23 22 21 47 47 H 1.08008 * 119.99997 * 359.97438 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6491 8 14 3.0997 4.2793 -2.6586 9 1 1.9630 5.1785 -2.3345 10 1 4.3621 5.0612 -2.6662 11 1 2.8847 3.6723 -3.9967 12 6 2.3733 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5134 3.4192 3.1556 15 7 0.3350 4.0944 3.7047 16 6 0.4234 4.7610 4.8726 17 8 1.4799 4.8062 5.4666 18 6 -0.7904 5.4503 5.4406 19 1 -1.5767 4.7159 5.6156 20 6 -1.2884 6.5047 4.4501 21 6 -0.4267 6.1159 6.7429 22 6 -1.0744 5.7521 7.9089 23 6 -0.7430 6.3615 9.1043 24 6 0.2381 7.3374 9.1350 25 9 0.5630 7.9332 10.3031 26 6 0.8869 7.7030 7.9655 27 9 1.8444 8.6556 7.9928 28 6 0.5580 7.0854 6.7712 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.0490 3.4029 -0.7830 35 1 3.1617 2.7641 1.0859 36 1 2.7255 1.2833 1.9721 37 1 0.3542 2.0069 2.0138 38 1 0.7904 3.4876 1.1276 39 1 2.3018 4.1507 2.9778 40 1 1.8659 2.6701 3.8646 41 1 -0.5101 4.0579 3.2298 42 1 -0.5021 7.2390 4.2753 43 1 -1.5515 6.0229 3.5084 44 1 -2.1666 7.0029 4.8608 45 1 -1.8409 4.9915 7.8855 46 1 -1.2500 6.0768 10.0144 47 1 1.0666 7.3653 5.8605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266112354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:37 Heat of formation + Delta-G solvation = -97.021121 kcal Electronic energy + Delta-G solvation = -29020.236519 eV Core-core repulsion = 24646.146499 eV Total energy + Delta-G solvation = -4374.090020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.66357 -48.73741 -40.47025 -38.75734 -36.47947 -34.83415 -34.33528 -31.88819 -31.32257 -31.04745 -29.45841 -28.47935 -25.71311 -24.79254 -23.74252 -23.39027 -22.18048 -21.08675 -20.38336 -19.80718 -18.20050 -17.69645 -17.32622 -16.73813 -16.67803 -16.44097 -15.80234 -15.51943 -15.15030 -14.99524 -14.76631 -14.49058 -14.44598 -14.16052 -13.94710 -13.76322 -13.47759 -13.36347 -12.89705 -12.73619 -12.62279 -12.39841 -12.28583 -11.98637 -11.66211 -11.61597 -11.52177 -11.38101 -11.17214 -11.04514 -10.76211 -10.61083 -10.50787 -10.07964 -9.81630 -9.65083 -9.56717 -9.31380 -8.92279 -8.89191 -8.49353 -6.58845 -5.80881 -3.40280 0.59439 0.74025 2.61977 2.93877 3.32889 3.37038 3.40950 3.41444 3.51937 4.02506 4.12464 4.22796 4.44964 4.59260 4.66818 4.75096 4.83937 4.93376 5.20992 5.26465 5.36679 5.39650 5.46166 5.55923 5.59012 5.61724 5.68563 5.75588 5.81384 5.94947 6.04508 6.05325 6.24792 6.32346 6.39229 6.43361 6.45492 6.55348 6.71372 6.73988 6.88568 7.06049 7.14695 7.56735 7.65084 7.79817 8.24365 8.50183 9.17476 9.79746 10.38676 11.18651 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.002201 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.785270 B =12718.871189 C =13551.541746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.722 5.722 16 C 0.511 3.489 17 O -0.535 6.535 18 C -0.073 4.073 19 H 0.111 0.889 20 C -0.144 4.144 21 C -0.046 4.046 22 C -0.093 4.093 23 C -0.128 4.128 24 C 0.064 3.936 25 F -0.131 7.131 26 C 0.068 3.932 27 F -0.129 7.129 28 C -0.090 4.090 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.256 0.744 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.399 0.601 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.748 6.280 16.374 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.023 3.977 13 C -0.187 4.187 14 C -0.003 4.003 15 N -0.372 5.372 16 C 0.295 3.705 17 O -0.411 6.411 18 C -0.094 4.094 19 H 0.129 0.871 20 C -0.202 4.202 21 C -0.047 4.047 22 C -0.111 4.111 23 C -0.147 4.147 24 C 0.044 3.956 25 F -0.110 7.110 26 C 0.047 3.953 27 F -0.107 7.107 28 C -0.109 4.109 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.233 0.767 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.706 6.427 16.807 22.620 hybrid contribution -0.186 0.984 -0.646 1.192 sum -13.892 7.411 16.161 22.563 Atomic orbital electron populations 1.22369 1.00183 0.98880 1.01068 1.20849 0.91663 0.87413 0.98727 1.43736 1.76065 1.08168 1.02486 1.18929 1.04672 1.21329 0.94187 0.92381 1.25189 0.94200 1.01298 0.98053 1.69989 1.03169 1.37290 1.42363 0.86493 0.76927 0.82382 0.81696 1.20932 1.21597 1.20718 1.20794 0.94440 0.96655 0.85769 1.22540 1.02389 0.99861 0.93869 1.21505 0.87023 0.96140 0.95654 1.46157 1.14613 1.53639 1.22840 1.20344 0.89778 0.79158 0.81193 1.90748 1.30094 1.60642 1.59632 1.20345 0.97481 0.98455 0.93146 0.87125 1.21840 1.02077 0.98122 0.98142 1.19232 0.95546 0.95476 0.94436 1.20946 0.99979 0.99477 0.90675 1.20994 0.97411 0.96195 1.00077 1.17708 0.99521 0.97667 0.80708 1.91521 1.91834 1.82355 1.45266 1.17635 0.91529 0.92299 0.93799 1.91534 1.60936 1.61138 1.97131 1.20889 0.97284 0.95798 0.96883 0.94639 0.93839 0.93270 0.93892 0.94856 0.93424 0.88754 0.95697 0.93067 0.91706 0.91464 0.91972 0.76709 0.91598 0.91049 0.90983 0.84173 0.83638 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 10.21 37.16 0.38 -2.46 16 2 C 0.14 2.86 6.44 -4.04 -0.03 2.83 16 3 N -0.58 -13.86 2.43 -173.24 -0.42 -14.28 16 4 C -0.26 -6.86 9.45 -15.06 -0.14 -7.00 16 5 H 0.06 1.53 7.92 -52.48 -0.42 1.11 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -24.93 11.47 55.49 0.64 -24.30 16 8 Si 0.90 20.98 29.60 -169.99 -5.03 15.95 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.15 3.31 5.33 -4.04 -0.02 3.28 16 13 C -0.15 -2.55 5.65 -26.73 -0.15 -2.70 16 14 C 0.12 1.88 5.67 -4.04 -0.02 1.86 16 15 N -0.72 -8.86 5.45 -60.30 -0.33 -9.19 16 16 C 0.51 6.43 7.02 -10.99 -0.08 6.36 16 17 O -0.53 -9.01 15.08 5.55 0.08 -8.93 16 18 C -0.07 -0.61 2.90 -92.92 -0.27 -0.88 16 19 H 0.11 0.63 7.87 -51.92 -0.41 0.22 16 20 C -0.14 -0.98 8.91 37.16 0.33 -0.65 16 21 C -0.05 -0.44 4.40 -104.62 -0.46 -0.90 16 22 C -0.09 -0.71 9.67 -39.59 -0.38 -1.09 16 23 C -0.13 -1.05 10.02 -39.53 -0.40 -1.44 16 24 C 0.06 0.69 7.31 -39.36 -0.29 0.41 16 25 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 26 C 0.07 0.81 7.31 -39.36 -0.29 0.52 16 27 F -0.13 -1.71 17.18 2.25 0.04 -1.67 16 28 C -0.09 -1.01 7.90 -39.53 -0.31 -1.32 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.71 6.64 -51.93 -0.34 0.37 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.09 2.39 5.52 -51.93 -0.29 2.10 16 36 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 37 H 0.05 0.83 6.64 -51.92 -0.34 0.49 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.40 3.83 7.89 -40.82 -0.32 3.51 16 42 H 0.06 0.52 7.40 -51.93 -0.38 0.13 16 43 H 0.07 0.43 7.57 -51.93 -0.39 0.04 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.14 0.66 7.94 -52.48 -0.42 0.24 16 46 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.14 1.66 7.51 -52.48 -0.39 1.26 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -31.32 394.77 -8.29 -39.61 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.04 Total: 1.27 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.21 Total: -2.92 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.11 Total: -47.77 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.32 -8.29 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266112354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.408 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds