Wall clock time and date at job start Wed Apr 1 2020 00:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46500 * 109.46855 * 2 1 4 4 C 1.36939 * 120.00035 * 275.30114 * 3 2 1 5 5 H 1.08003 * 119.99306 * 37.58851 * 4 3 2 6 6 C 1.38803 * 120.00392 * 217.58772 * 4 3 2 7 7 N 1.31618 * 119.99917 * 21.42370 * 6 4 3 8 8 Si 1.86801 * 120.00246 * 201.42814 * 6 4 3 9 9 H 1.48506 * 109.47076 * 59.99663 * 8 6 4 10 10 H 1.48495 * 109.47443 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46976 * 299.99994 * 8 6 4 12 12 C 1.46495 * 119.99845 * 95.31585 * 3 2 1 13 13 C 1.53007 * 109.46889 * 269.98919 * 12 3 2 14 14 C 1.53002 * 109.47329 * 180.02562 * 13 12 3 15 15 N 1.46498 * 109.47115 * 180.02562 * 14 13 12 16 16 C 1.34766 * 120.00164 * 179.72522 * 15 14 13 17 17 O 1.21285 * 119.99760 * 0.27340 * 16 15 14 18 18 C 1.50697 * 120.00273 * 180.27528 * 16 15 14 19 19 H 1.09008 * 109.47281 * 60.00292 * 18 16 15 20 20 C 1.53000 * 109.47340 * 299.99791 * 18 16 15 21 21 C 1.50707 * 109.47146 * 179.97438 * 18 16 15 22 22 C 1.38254 * 119.96672 * 239.99903 * 21 18 16 23 23 C 1.38207 * 120.07122 * 180.02562 * 22 21 18 24 24 C 1.38414 * 120.00218 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.04093 * 180.02562 * 24 23 22 26 26 C 1.38651 * 119.92643 * 0.02562 * 24 23 22 27 27 F 1.35097 * 120.03699 * 179.97438 * 26 24 23 28 28 C 1.38209 * 119.96216 * 59.73096 * 21 18 16 29 29 H 1.08999 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46914 * 300.00447 * 1 2 3 31 31 H 1.08999 * 109.46800 * 60.00011 * 1 2 3 32 32 H 1.08994 * 109.46798 * 239.99476 * 2 1 3 33 33 H 1.08999 * 109.46800 * 119.99989 * 2 1 3 34 34 H 0.97003 * 120.00026 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47243 * 149.99934 * 12 3 2 36 36 H 1.08994 * 109.47787 * 29.98925 * 12 3 2 37 37 H 1.09007 * 109.46479 * 60.00043 * 13 12 3 38 38 H 1.08999 * 109.47052 * 300.00988 * 13 12 3 39 39 H 1.08997 * 109.46721 * 60.00199 * 14 13 12 40 40 H 1.09001 * 109.46863 * 300.00321 * 14 13 12 41 41 H 0.97005 * 119.99568 * 0.02562 * 15 14 13 42 42 H 1.08997 * 109.46997 * 300.00079 * 20 18 16 43 43 H 1.09004 * 109.46544 * 59.99747 * 20 18 16 44 44 H 1.09001 * 109.47063 * 179.97438 * 20 18 16 45 45 H 1.08005 * 119.96581 * 359.97438 * 22 21 18 46 46 H 1.08001 * 120.00522 * 179.97438 * 23 22 21 47 47 H 1.08008 * 119.99997 * 359.97438 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6491 8 14 3.0997 4.2793 -2.6586 9 1 1.9630 5.1785 -2.3345 10 1 4.3621 5.0612 -2.6662 11 1 2.8847 3.6723 -3.9967 12 6 2.3733 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5134 3.4192 3.1556 15 7 0.3350 4.0944 3.7047 16 6 0.4234 4.7610 4.8726 17 8 1.4799 4.8062 5.4666 18 6 -0.7904 5.4503 5.4406 19 1 -1.5767 4.7159 5.6156 20 6 -1.2884 6.5047 4.4501 21 6 -0.4267 6.1159 6.7429 22 6 -1.0744 5.7521 7.9089 23 6 -0.7430 6.3615 9.1043 24 6 0.2381 7.3374 9.1350 25 9 0.5630 7.9332 10.3031 26 6 0.8869 7.7030 7.9655 27 9 1.8444 8.6556 7.9928 28 6 0.5580 7.0854 6.7712 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.0490 3.4029 -0.7830 35 1 3.1617 2.7641 1.0859 36 1 2.7255 1.2833 1.9721 37 1 0.3542 2.0069 2.0138 38 1 0.7904 3.4876 1.1276 39 1 2.3018 4.1507 2.9778 40 1 1.8659 2.6701 3.8646 41 1 -0.5101 4.0579 3.2298 42 1 -0.5021 7.2390 4.2753 43 1 -1.5515 6.0229 3.5084 44 1 -2.1666 7.0029 4.8608 45 1 -1.8409 4.9915 7.8855 46 1 -1.2500 6.0768 10.0144 47 1 1.0666 7.3653 5.8605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266112354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:36 Heat of formation + Delta-G solvation = -114.486884 kcal Electronic energy + Delta-G solvation = -29020.993891 eV Core-core repulsion = 24646.146499 eV Total energy + Delta-G solvation = -4374.847393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.54783 -49.63490 -41.36535 -39.64176 -38.15309 -36.14780 -35.10677 -33.79923 -32.64131 -31.82372 -30.42926 -29.88954 -27.17795 -25.87483 -25.10604 -24.20190 -23.13996 -22.47361 -21.99881 -20.93053 -19.03188 -18.61531 -18.52845 -18.13443 -17.55644 -17.33673 -17.02761 -16.87918 -16.52147 -16.06888 -15.81236 -15.66413 -15.56298 -15.22800 -15.10965 -14.92871 -14.68581 -14.36203 -14.16977 -14.04012 -13.61778 -13.42923 -13.20967 -13.14239 -13.02391 -12.75430 -12.70656 -12.63460 -12.53609 -12.34160 -12.25335 -12.13861 -12.11317 -11.91582 -11.44848 -11.22186 -10.80351 -10.47736 -10.08043 -10.04043 -9.68932 -8.53106 -7.79649 -5.43868 -0.16626 0.01567 1.46497 1.48892 1.55172 1.64435 2.09106 2.47411 2.53281 2.76328 3.24870 3.25723 3.38565 3.57255 3.69186 3.82117 3.99520 4.07155 4.16501 4.21560 4.33078 4.37026 4.47775 4.57587 4.67006 4.75751 4.78707 4.81349 4.84017 4.88357 4.91307 4.95126 5.03142 5.05128 5.07399 5.19094 5.25471 5.36345 5.37084 5.47130 5.50162 5.62928 5.71302 5.72506 5.86785 6.49246 6.60057 7.20387 7.28183 7.90714 8.42880 9.14655 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.002201 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.785270 B =12718.871189 C =13551.541746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.602 5.602 4 C -0.262 4.262 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.298 1.298 11 H -0.275 1.275 12 C 0.149 3.851 13 C -0.121 4.121 14 C 0.134 3.866 15 N -0.711 5.711 16 C 0.507 3.493 17 O -0.583 6.583 18 C -0.060 4.060 19 H 0.154 0.846 20 C -0.144 4.144 21 C -0.053 4.053 22 C -0.077 4.077 23 C -0.118 4.118 24 C 0.047 3.953 25 F -0.141 7.141 26 C 0.036 3.964 27 F -0.148 7.148 28 C -0.104 4.104 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.250 0.750 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.416 0.584 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.185 0.815 46 H 0.178 0.822 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.728 5.184 17.062 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.074 0.926 6 C -0.234 4.234 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.224 1.224 11 H -0.201 1.201 12 C 0.022 3.978 13 C -0.161 4.161 14 C 0.009 3.991 15 N -0.363 5.363 16 C 0.295 3.705 17 O -0.463 6.463 18 C -0.081 4.081 19 H 0.171 0.829 20 C -0.201 4.201 21 C -0.054 4.054 22 C -0.095 4.095 23 C -0.136 4.136 24 C 0.027 3.973 25 F -0.120 7.120 26 C 0.016 3.984 27 F -0.126 7.126 28 C -0.123 4.123 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.253 0.747 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.202 0.798 46 H 0.196 0.804 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.750 5.322 17.483 25.476 hybrid contribution 1.054 1.224 -0.840 1.821 sum -16.696 6.546 16.643 24.466 Atomic orbital electron populations 1.22162 0.97035 1.00790 1.00955 1.21005 0.94022 0.85672 0.98512 1.43991 1.76479 1.09565 1.02272 1.19144 1.04022 1.21169 0.94895 0.92623 1.25853 0.94023 1.03408 1.00144 1.70131 1.03795 1.38108 1.44298 0.85570 0.76529 0.79956 0.79793 1.20111 1.22435 1.20091 1.20706 0.95483 0.96051 0.85527 1.22145 1.00510 0.99547 0.93919 1.21090 0.87744 0.95405 0.94890 1.45943 1.14177 1.53199 1.23010 1.21163 0.90582 0.78292 0.80496 1.90741 1.32400 1.62195 1.60926 1.20404 0.96028 0.99194 0.92470 0.82856 1.21885 1.02269 0.97495 0.98497 1.19497 0.95141 0.94850 0.95921 1.21430 0.99677 0.99117 0.89237 1.21417 0.95948 0.94469 1.01758 1.18030 1.00561 0.98740 0.79940 1.91489 1.92105 1.82758 1.45629 1.17967 0.92335 0.93092 0.94964 1.91471 1.61867 1.62018 1.97282 1.20904 0.98394 0.96977 0.96058 0.91709 0.92768 0.94466 0.95463 0.93796 0.94112 0.92473 0.95597 0.90869 0.92891 0.94280 0.92373 0.74701 0.93534 0.89819 0.88647 0.79818 0.80442 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 10.21 71.99 0.73 -3.99 16 2 C 0.13 5.28 6.44 86.38 0.56 5.84 16 3 N -0.60 -28.46 2.43 -702.00 -1.71 -30.17 16 4 C -0.26 -13.79 9.45 84.03 0.79 -12.99 16 5 H 0.06 2.92 7.92 -2.91 -0.02 2.89 16 6 C -0.04 -2.01 4.95 84.86 0.42 -1.59 16 7 N -0.92 -53.36 11.47 21.65 0.25 -53.12 16 8 Si 0.95 43.65 29.60 68.60 2.03 45.68 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 C 0.15 6.61 5.33 86.38 0.46 7.07 16 13 C -0.12 -4.10 5.65 30.60 0.17 -3.93 16 14 C 0.13 4.15 5.67 86.38 0.49 4.64 16 15 N -0.71 -16.15 5.45 -463.07 -2.52 -18.68 16 16 C 0.51 12.02 7.02 87.66 0.62 12.63 16 17 O -0.58 -19.78 15.08 -3.05 -0.05 -19.83 16 18 C -0.06 -0.80 2.90 -12.28 -0.04 -0.84 16 19 H 0.15 0.81 7.87 -2.38 -0.02 0.79 16 20 C -0.14 -1.54 8.91 71.98 0.64 -0.90 16 21 C -0.05 -0.89 4.40 -19.87 -0.09 -0.97 16 22 C -0.08 -0.86 9.67 22.27 0.22 -0.64 16 23 C -0.12 -1.57 10.02 22.30 0.22 -1.35 16 24 C 0.05 1.00 7.31 22.41 0.16 1.17 16 25 F -0.14 -3.30 17.18 44.97 0.77 -2.53 16 26 C 0.04 0.91 7.31 22.41 0.16 1.07 16 27 F -0.15 -4.28 17.18 44.97 0.77 -3.51 16 28 C -0.10 -2.40 7.90 22.31 0.18 -2.22 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.58 6.64 -2.39 -0.02 1.57 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.04 1.62 7.83 -2.39 -0.02 1.61 16 34 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.06 3.01 5.52 -2.39 -0.01 3.00 16 36 H 0.03 1.11 7.86 -2.39 -0.02 1.09 16 37 H 0.07 2.17 6.64 -2.38 -0.02 2.16 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.42 6.64 7.89 -92.70 -0.73 5.90 16 42 H 0.05 0.69 7.40 -2.39 -0.02 0.67 16 43 H 0.08 0.71 7.57 -2.38 -0.02 0.69 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.18 0.47 7.94 -2.91 -0.02 0.45 16 46 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.13 3.22 7.51 -2.91 -0.02 3.20 16 Total: -1.00 -72.42 394.77 5.51 -66.91 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.25 Total: 12.24 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.71 Total: 3.00 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -3.98 Total: -101.96 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 1.55 Total: -6.04 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -72.42 5.51 -66.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266112354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.577 kcal (2) G-P(sol) polarization free energy of solvation -72.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds