Wall clock time and date at job start Wed Apr 1 2020 00:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47193 * 2 1 4 4 C 1.36932 * 120.00267 * 264.29101 * 3 2 1 5 5 H 1.08003 * 119.99803 * 188.64100 * 4 3 2 6 6 C 1.38808 * 120.00241 * 8.63493 * 4 3 2 7 7 N 1.31623 * 119.99718 * 24.60558 * 6 4 3 8 8 Si 1.86798 * 120.00523 * 204.60618 * 6 4 3 9 9 H 1.48498 * 109.47304 * 85.02704 * 8 6 4 10 10 H 1.48498 * 109.47227 * 205.02706 * 8 6 4 11 11 H 1.48504 * 109.47151 * 325.02732 * 8 6 4 12 12 C 1.46504 * 119.99784 * 84.29201 * 3 2 1 13 13 C 1.52999 * 109.46750 * 269.99740 * 12 3 2 14 14 C 1.53006 * 109.46679 * 179.97438 * 13 12 3 15 15 N 1.46504 * 109.47009 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00079 * 179.97438 * 15 14 13 17 17 O 1.21275 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99738 * 180.02562 * 16 15 14 19 19 H 1.08997 * 109.47692 * 300.00069 * 18 16 15 20 20 C 1.53004 * 109.47255 * 60.00329 * 18 16 15 21 21 C 1.50701 * 109.46789 * 180.02562 * 18 16 15 22 22 C 1.38258 * 119.96309 * 299.72577 * 21 18 16 23 23 C 1.38217 * 120.06696 * 179.72836 * 22 21 18 24 24 C 1.38408 * 120.00128 * 0.54619 * 23 22 21 25 25 F 1.35099 * 120.03848 * 179.74657 * 24 23 22 26 26 C 1.38647 * 119.93077 * 359.73172 * 24 23 22 27 27 F 1.35095 * 120.03832 * 180.02562 * 26 24 23 28 28 C 1.38211 * 119.96376 * 120.00276 * 21 18 16 29 29 H 1.08998 * 109.46776 * 300.00013 * 1 2 3 30 30 H 1.09001 * 109.47043 * 60.00058 * 1 2 3 31 31 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46981 * 239.99893 * 2 1 3 33 33 H 1.08995 * 109.47127 * 120.00647 * 2 1 3 34 34 H 0.97000 * 119.99878 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.47032 * 149.99956 * 12 3 2 36 36 H 1.08996 * 109.47244 * 29.99688 * 12 3 2 37 37 H 1.08999 * 109.47098 * 60.00710 * 13 12 3 38 38 H 1.08997 * 109.47708 * 299.99813 * 13 12 3 39 39 H 1.08997 * 109.47064 * 60.00920 * 14 13 12 40 40 H 1.08996 * 109.47400 * 300.00000 * 14 13 12 41 41 H 0.97004 * 119.99845 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.46648 * 59.99977 * 20 18 16 43 43 H 1.08996 * 109.47013 * 179.97438 * 20 18 16 44 44 H 1.08998 * 109.47005 * 299.99673 * 20 18 16 45 45 H 1.07999 * 119.96640 * 0.02562 * 22 21 18 46 46 H 1.07998 * 119.99903 * 180.27516 * 23 22 21 47 47 H 1.08003 * 120.00466 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9874 -1.1800 5 1 2.8471 2.9502 -1.1712 6 6 2.0732 1.3645 -2.3873 7 7 1.0959 0.4858 -2.4602 8 14 3.0771 1.7731 -3.9087 9 1 4.3047 0.9378 -3.9309 10 1 2.2690 1.4977 -5.1237 11 1 3.4557 3.2088 -3.8810 12 6 2.1435 2.1138 1.2625 13 6 0.8339 2.8473 1.5584 14 6 0.9644 3.6120 2.8773 15 7 -0.2894 4.3149 3.1604 16 6 -0.4076 5.0585 4.2782 17 8 0.5242 5.1461 5.0495 18 6 -1.6975 5.7810 4.5696 19 1 -1.9115 6.4822 3.7631 20 6 -2.8372 4.7660 4.6788 21 6 -1.5689 6.5342 5.8686 22 6 -1.3022 5.8501 7.0400 23 6 -1.1782 6.5394 8.2316 24 6 -1.3324 7.9146 8.2549 25 9 -1.2165 8.5885 9.4200 26 6 -1.6056 8.6001 7.0811 27 9 -1.7560 9.9425 7.1012 28 6 -1.7235 7.9075 5.8884 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.8973 0.0502 -3.3039 35 1 2.9553 2.8370 1.1839 36 1 2.3579 1.4132 2.0695 37 1 0.0221 2.1241 1.6370 38 1 0.6194 3.5480 0.7515 39 1 1.7761 4.3352 2.7991 40 1 1.1786 2.9110 3.6840 41 1 -1.0349 4.2445 2.5436 42 1 -2.6232 4.0649 5.4854 43 1 -3.7701 5.2886 4.8900 44 1 -2.9301 4.2216 3.7391 45 1 -1.1857 4.7765 7.0232 46 1 -0.9654 6.0043 9.1453 47 1 -1.9367 8.4403 4.9734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266112355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:39 Heat of formation + Delta-G solvation = -100.738925 kcal Electronic energy + Delta-G solvation = -28783.819719 eV Core-core repulsion = 24409.568482 eV Total energy + Delta-G solvation = -4374.251236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.53514 -49.62031 -41.35479 -39.63532 -38.24448 -36.21442 -35.10221 -33.66027 -32.09919 -31.91184 -30.70999 -29.90004 -27.06259 -25.75174 -24.91279 -24.30965 -23.18180 -22.47827 -21.98800 -20.86331 -19.03531 -18.68623 -18.51937 -18.12500 -17.45276 -17.31760 -17.09601 -16.68257 -16.61731 -16.04801 -15.93366 -15.55678 -15.46178 -15.42838 -14.97148 -14.76276 -14.67465 -14.33495 -14.04984 -13.80975 -13.66036 -13.40056 -13.21661 -13.12978 -12.96218 -12.86251 -12.60738 -12.59994 -12.51917 -12.41972 -12.12184 -12.06784 -12.00226 -11.63454 -11.33298 -11.13274 -10.81658 -10.30607 -10.08631 -10.01277 -9.67448 -8.79187 -7.76927 -5.07530 -0.16381 -0.00120 1.49571 1.54197 1.58939 1.66181 2.09601 2.48083 2.58134 2.76122 3.24627 3.32424 3.38238 3.55169 3.69436 3.83145 4.03445 4.06832 4.16071 4.20821 4.26535 4.33269 4.53013 4.67819 4.71034 4.76922 4.80777 4.82096 4.86751 4.90718 4.94644 4.97005 5.03637 5.09263 5.24747 5.29008 5.30872 5.37584 5.38996 5.49412 5.59764 5.67106 5.70807 5.86259 6.22628 6.41061 6.60155 7.26668 7.27476 7.99063 8.38531 9.24732 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.001828 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.987101 B =15316.166383 C =15672.826741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.252 4.252 5 H 0.070 0.930 6 C -0.051 4.051 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.293 1.293 10 H -0.299 1.299 11 H -0.277 1.277 12 C 0.150 3.850 13 C -0.133 4.133 14 C 0.132 3.868 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.576 6.576 18 C -0.065 4.065 19 H 0.135 0.865 20 C -0.142 4.142 21 C -0.050 4.050 22 C -0.069 4.069 23 C -0.124 4.124 24 C 0.048 3.952 25 F -0.141 7.141 26 C 0.047 3.953 27 F -0.140 7.140 28 C -0.114 4.114 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.245 0.755 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.413 0.587 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.145 0.855 46 H 0.165 0.835 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 10.360 18.462 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.041 3.959 3 N -0.334 5.334 4 C -0.382 4.382 5 H 0.088 0.912 6 C -0.246 4.246 7 N -0.562 5.562 8 Si 0.780 3.220 9 H -0.221 1.221 10 H -0.226 1.226 11 H -0.202 1.202 12 C 0.023 3.977 13 C -0.173 4.173 14 C 0.008 3.992 15 N -0.368 5.368 16 C 0.300 3.700 17 O -0.455 6.455 18 C -0.086 4.086 19 H 0.153 0.847 20 C -0.199 4.199 21 C -0.051 4.051 22 C -0.087 4.087 23 C -0.142 4.142 24 C 0.028 3.972 25 F -0.120 7.120 26 C 0.027 3.973 27 F -0.119 7.119 28 C -0.133 4.133 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.250 0.750 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.163 0.837 46 H 0.182 0.818 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.335 10.403 18.901 23.923 hybrid contribution 0.322 0.563 -1.084 1.263 sum -10.013 10.966 17.817 23.194 Atomic orbital electron populations 1.22181 0.98314 0.98666 1.00278 1.20699 0.93316 0.84486 0.97424 1.44397 1.76116 1.10649 1.02275 1.19469 1.30611 1.03432 0.84700 0.91194 1.25292 0.98970 1.00853 0.99455 1.70298 1.28153 1.32924 1.24784 0.85537 0.78740 0.77658 0.80063 1.22102 1.22628 1.20195 1.20835 0.95033 0.94488 0.87358 1.22336 1.00929 0.99112 0.94921 1.21197 0.86074 0.95055 0.96882 1.46014 1.17145 1.49463 1.24141 1.20911 0.89783 0.78666 0.80599 1.90718 1.42271 1.63828 1.48697 1.20359 0.93377 0.98681 0.96179 0.84736 1.21867 0.96445 0.97704 1.03869 1.19413 0.98215 0.92363 0.95096 1.21081 0.95565 1.01384 0.90685 1.21270 1.01029 0.90653 1.01270 1.17967 1.07109 0.91536 0.80635 1.91492 1.93877 1.80506 1.46094 1.17820 1.07419 0.77562 0.94509 1.91496 1.93573 1.29550 1.97257 1.21150 1.01088 0.94040 0.97019 0.94829 0.92362 0.95193 0.92842 0.96035 0.94572 0.93686 0.92646 0.91686 0.93062 0.92713 0.91792 0.75035 0.91894 0.89360 0.90089 0.83695 0.81788 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 9.58 71.98 0.69 -5.03 16 2 C 0.17 7.55 5.64 86.38 0.49 8.04 16 3 N -0.61 -28.21 2.54 -702.01 -1.78 -29.99 16 4 C -0.25 -13.00 9.70 84.03 0.82 -12.18 16 5 H 0.07 3.56 7.93 -2.91 -0.02 3.54 16 6 C -0.05 -2.68 4.91 84.86 0.42 -2.27 16 7 N -0.91 -49.81 8.54 21.65 0.18 -49.63 16 8 Si 0.95 43.51 29.62 68.60 2.03 45.55 16 9 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 C 0.15 5.43 5.71 86.38 0.49 5.92 16 13 C -0.13 -4.01 5.53 30.60 0.17 -3.84 16 14 C 0.13 3.33 5.68 86.38 0.49 3.82 16 15 N -0.72 -14.22 5.45 -463.06 -2.52 -16.74 16 16 C 0.51 10.54 7.03 87.66 0.62 11.15 16 17 O -0.58 -16.55 15.12 -3.02 -0.05 -16.59 16 18 C -0.06 -0.82 2.90 -12.29 -0.04 -0.85 16 19 H 0.13 1.07 7.87 -2.39 -0.02 1.05 16 20 C -0.14 -1.20 8.90 71.98 0.64 -0.56 16 21 C -0.05 -0.78 4.39 -19.87 -0.09 -0.87 16 22 C -0.07 -1.12 7.93 22.27 0.18 -0.94 16 23 C -0.12 -2.03 10.02 22.31 0.22 -1.81 16 24 C 0.05 0.96 7.31 22.41 0.16 1.12 16 25 F -0.14 -3.16 17.18 44.97 0.77 -2.39 16 26 C 0.05 0.93 7.31 22.41 0.16 1.10 16 27 F -0.14 -3.11 17.18 44.97 0.77 -2.34 16 28 C -0.11 -1.80 9.65 22.31 0.22 -1.58 16 29 H 0.03 1.24 5.98 -2.39 -0.01 1.23 16 30 H 0.06 2.87 6.28 -2.39 -0.01 2.86 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 2.80 5.87 -2.38 -0.01 2.79 16 33 H 0.02 0.88 7.97 -2.39 -0.02 0.86 16 34 H 0.24 13.18 8.31 -92.71 -0.77 12.41 16 35 H 0.04 1.63 8.03 -2.38 -0.02 1.61 16 36 H 0.06 1.83 7.95 -2.39 -0.02 1.81 16 37 H 0.06 1.99 5.93 -2.39 -0.01 1.98 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.41 6.31 7.89 -92.71 -0.73 5.58 16 42 H 0.06 0.60 7.37 -2.39 -0.02 0.58 16 43 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.56 7.56 -2.39 -0.02 0.54 16 45 H 0.15 2.13 7.51 -2.91 -0.02 2.11 16 46 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.17 1.78 7.94 -2.91 -0.02 1.75 16 Total: -1.00 -64.73 388.32 5.31 -59.42 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.26 Total: 11.48 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.64 Total: 1.24 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -4.12 Total: -96.36 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.05 Total: -16.59 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 1.55 Total: -4.72 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.55 kcal Total: -64.73 5.31 -59.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266112355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.321 kcal (2) G-P(sol) polarization free energy of solvation -64.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds