Wall clock time and date at job start Tue Mar 31 2020 23:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47587 * 2 1 4 4 O 1.42907 * 109.46882 * 119.99838 * 2 1 3 5 5 C 1.53001 * 109.47409 * 239.99291 * 2 1 3 6 6 C 1.50693 * 109.47118 * 175.00309 * 5 2 1 7 7 O 1.21282 * 120.00308 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99854 * 180.02562 * 6 5 2 9 9 C 1.47084 * 125.62927 * 359.97438 * 8 6 5 10 10 C 1.54469 * 107.29850 * 179.02882 * 9 8 6 11 11 C 1.54308 * 102.87242 * 338.54538 * 10 9 8 12 12 C 1.47584 * 125.62762 * 179.97438 * 8 6 5 13 13 C 1.52019 * 110.69384 * 152.79020 * 11 10 9 14 14 N 1.46277 * 109.96489 * 170.21093 * 13 11 10 15 15 C 1.46503 * 118.81399 * 162.92049 * 14 13 11 16 16 C 1.53003 * 109.47043 * 270.00072 * 15 14 13 17 17 C 1.50702 * 109.47052 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99927 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99516 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00708 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99359 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47408 * 90.00078 * 21 19 17 23 23 H 1.48508 * 109.46924 * 210.00037 * 21 19 17 24 24 H 1.48503 * 109.47411 * 330.00056 * 21 19 17 25 25 C 1.33835 * 122.36622 * 342.92132 * 14 13 11 26 26 O 1.21281 * 118.61224 * 182.98616 * 25 14 13 27 27 C 1.50276 * 122.76685 * 2.70462 * 25 14 13 28 28 O 1.42098 * 110.71680 * 276.30164 * 11 10 9 29 29 H 1.09004 * 109.46469 * 60.00712 * 1 2 3 30 30 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47115 * 300.00380 * 1 2 3 32 32 H 0.96701 * 113.99689 * 300.00039 * 4 2 1 33 33 H 1.09001 * 109.46523 * 55.00310 * 5 2 1 34 34 H 1.08999 * 109.47334 * 295.00712 * 5 2 1 35 35 H 1.09001 * 109.88297 * 59.60162 * 9 8 6 36 36 H 1.09006 * 109.87472 * 298.45170 * 9 8 6 37 37 H 1.08998 * 110.73509 * 220.19868 * 10 9 8 38 38 H 1.08999 * 110.88664 * 96.95924 * 10 9 8 39 39 H 1.08998 * 110.37452 * 84.42171 * 12 8 6 40 40 H 1.08995 * 110.37585 * 322.06953 * 12 8 6 41 41 H 1.08998 * 109.39356 * 290.36628 * 13 11 10 42 42 H 1.09004 * 109.38661 * 50.05755 * 13 11 10 43 43 H 1.08994 * 109.47506 * 29.99865 * 15 14 13 44 44 H 1.09003 * 109.46887 * 150.00090 * 15 14 13 45 45 H 1.09002 * 109.46655 * 299.99904 * 16 15 14 46 46 H 1.08994 * 109.47420 * 60.00015 * 16 15 14 47 47 H 0.96996 * 120.00565 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.39093 * 103.44325 * 27 25 14 49 49 H 1.09002 * 109.38718 * 223.24635 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.0401 -0.7214 -1.2491 6 6 3.5420 -0.6151 -1.3125 7 8 4.1451 -0.0213 -0.4439 8 7 4.2150 -1.1800 -2.3346 9 6 3.6117 -1.9262 -3.4493 10 6 4.7607 -2.3622 -4.3852 11 6 5.8882 -1.3703 -4.0305 12 6 5.6789 -1.1519 -2.5199 13 6 7.2510 -1.9863 -4.3030 14 7 8.2927 -0.9661 -4.1859 15 6 9.6856 -1.3936 -4.0325 16 6 10.0118 -1.5450 -2.5453 17 6 11.4448 -1.9841 -2.3876 18 1 12.0610 -2.1400 -3.2606 19 6 11.9689 -2.1868 -1.1285 20 7 11.2187 -1.9965 -0.0653 21 14 13.7450 -2.7318 -0.9330 22 1 14.6214 -1.5371 -0.8345 23 1 13.8795 -3.5475 0.3007 24 1 14.1459 -3.5442 -2.1097 25 6 8.0192 0.3437 -4.2137 26 8 8.9408 1.1306 -4.1661 27 6 6.6186 0.8802 -4.3077 28 8 5.7287 -0.1518 -4.7440 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7210 -0.2701 1.9980 33 1 1.6055 -0.2619 -2.1369 34 1 1.7517 -1.7716 -1.2055 35 1 2.9156 -1.2854 -3.9906 36 1 3.0905 -2.8044 -3.0683 37 1 4.4684 -2.2566 -5.4300 38 1 5.0671 -3.3865 -4.1733 39 1 6.1488 -1.9547 -1.9518 40 1 6.0813 -0.1853 -2.2167 41 1 7.4399 -2.7809 -3.5812 42 1 7.2647 -2.4035 -5.3100 43 1 9.8297 -2.3499 -4.5352 44 1 10.3455 -0.6473 -4.4751 45 1 9.8677 -0.5887 -2.0426 46 1 9.3520 -2.2912 -2.1028 47 1 11.5874 -2.1395 0.8204 48 1 6.3027 1.2406 -3.3287 49 1 6.5937 1.7035 -5.0217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270413734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:45 Heat of formation + Delta-G solvation = -155.285155 kcal Electronic energy + Delta-G solvation = -31186.292515 eV Core-core repulsion = 26920.763492 eV Total energy + Delta-G solvation = -4265.529023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25391 -39.76625 -38.41082 -37.23326 -36.10960 -35.47252 -33.11669 -32.56270 -31.78489 -30.26466 -29.32969 -28.60594 -27.58591 -25.96090 -24.53504 -23.55916 -21.97702 -21.71012 -20.54292 -19.44995 -18.43491 -17.89876 -17.71293 -17.24478 -16.71358 -16.15006 -15.87691 -15.61820 -15.50505 -15.22060 -14.83089 -14.64069 -14.25554 -14.04426 -13.98994 -13.91948 -13.26449 -13.03161 -12.85044 -12.82465 -12.74191 -12.66120 -12.33912 -12.26818 -12.22169 -12.05775 -11.76839 -11.59800 -11.39642 -11.21964 -11.04113 -10.89877 -10.70948 -10.29983 -10.19146 -9.91992 -9.90580 -9.82227 -9.32725 -9.01187 -8.73539 -8.35506 -8.14530 -5.99900 -4.03726 2.61701 2.76313 2.85987 3.16044 3.33499 3.39299 3.41154 3.44397 3.96906 4.08232 4.19077 4.36525 4.45084 4.47350 4.50509 4.70751 4.85478 4.85734 4.96397 5.01369 5.12385 5.15280 5.18755 5.23055 5.35916 5.39853 5.41379 5.47442 5.50787 5.53142 5.55653 5.62734 5.71203 5.78282 5.81267 6.05062 6.07628 6.50506 6.64441 6.82069 6.85576 7.37108 7.51255 7.55722 7.69024 7.88886 7.98558 8.13558 8.34006 8.48373 9.02514 9.60313 11.11338 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.002998 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.521770 B = 9336.662416 C =10699.714575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.114 3.886 3 H 0.063 0.937 4 O -0.556 6.556 5 C -0.129 4.129 6 C 0.529 3.471 7 O -0.522 6.522 8 N -0.619 5.619 9 C 0.104 3.896 10 C -0.112 4.112 11 C 0.088 3.912 12 C 0.083 3.917 13 C 0.101 3.899 14 N -0.599 5.599 15 C 0.112 3.888 16 C 0.015 3.985 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.481 3.519 26 O -0.537 6.537 27 C 0.047 3.953 28 O -0.353 6.353 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.377 0.623 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.021 0.979 46 H 0.015 0.985 47 H 0.261 0.739 48 H 0.088 0.912 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.667 -0.671 -7.969 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.055 3.945 3 H 0.081 0.919 4 O -0.361 6.361 5 C -0.169 4.169 6 C 0.317 3.683 7 O -0.396 6.396 8 N -0.355 5.355 9 C -0.019 4.019 10 C -0.150 4.150 11 C 0.047 3.953 12 C -0.040 4.040 13 C -0.023 4.023 14 N -0.331 5.331 15 C -0.008 4.008 16 C -0.023 4.023 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.268 3.732 26 O -0.414 6.414 27 C -0.032 4.032 28 O -0.271 6.271 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.224 0.776 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.039 0.961 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.774 -0.270 -7.806 25.977 hybrid contribution 0.817 -0.050 0.820 1.159 sum -23.957 -0.320 -6.986 24.957 Atomic orbital electron populations 1.22541 0.96214 1.02886 1.02724 1.21454 0.91859 0.95803 0.85394 0.91936 1.86592 1.77234 1.56729 1.15569 1.21715 0.92465 1.03913 0.98816 1.20206 0.89619 0.78336 0.80142 1.90769 1.69996 1.41707 1.37151 1.48485 1.07303 1.55316 1.24428 1.22055 0.96270 0.96031 0.87505 1.22555 0.92970 0.98310 1.01181 1.22201 0.95191 0.86634 0.91296 1.22784 0.81442 1.04568 0.95197 1.21804 0.85265 0.92136 1.03113 1.47739 1.09402 1.04906 1.71096 1.21971 0.78401 0.99049 1.01403 1.19356 0.96622 0.97519 0.88798 1.21057 0.96490 1.46170 0.92343 0.92498 1.25002 0.97839 0.95464 0.95967 1.69968 1.36088 1.48974 0.97957 0.86561 0.85044 0.78661 0.77521 1.20589 1.21220 1.19838 1.20669 0.91922 0.83043 0.77609 1.90755 1.45829 1.55043 1.49810 1.22897 0.85622 0.91345 1.03315 1.87934 1.59175 1.20542 1.59475 0.91498 0.91710 0.91983 0.77629 0.87737 0.88217 0.90862 0.90913 0.88214 0.88231 0.89435 0.89596 0.88830 0.90399 0.91644 0.90413 0.96090 0.96692 0.92902 0.89389 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 9.54 37.16 0.35 -0.72 16 2 C 0.11 1.04 3.13 -26.73 -0.08 0.95 16 3 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 4 O -0.56 -6.27 12.55 -49.66 -0.62 -6.89 16 5 C -0.13 -1.14 4.60 -27.89 -0.13 -1.27 16 6 C 0.53 7.14 7.73 -10.99 -0.08 7.05 16 7 O -0.52 -9.60 15.69 -8.87 -0.14 -9.74 16 8 N -0.62 -7.40 3.33 -170.78 -0.57 -7.97 16 9 C 0.10 0.79 6.50 -2.95 -0.02 0.77 16 10 C -0.11 -0.83 6.12 -25.28 -0.15 -0.98 16 11 C 0.09 1.02 0.82 -89.88 -0.07 0.94 16 12 C 0.08 1.17 5.75 -2.89 -0.02 1.15 16 13 C 0.10 1.33 5.35 -4.66 -0.02 1.30 16 14 N -0.60 -10.71 2.83 -174.91 -0.49 -11.21 16 15 C 0.11 2.38 5.27 -4.04 -0.02 2.36 16 16 C 0.01 0.39 5.29 -27.88 -0.15 0.25 16 17 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 21 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 C 0.48 8.99 7.44 -11.61 -0.09 8.91 16 26 O -0.54 -12.35 16.33 5.56 0.09 -12.26 16 27 C 0.05 0.67 6.37 35.80 0.23 0.90 16 28 O -0.35 -4.43 10.43 -35.23 -0.37 -4.79 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.38 2.70 9.08 45.56 0.41 3.11 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.58 8.01 -51.93 -0.42 0.17 16 39 H 0.09 1.33 7.79 -51.93 -0.40 0.93 16 40 H 0.09 1.45 5.87 -51.93 -0.30 1.15 16 41 H 0.09 1.23 7.82 -51.93 -0.41 0.82 16 42 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 43 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 44 H 0.08 1.78 7.22 -51.93 -0.37 1.41 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.09 1.27 6.63 -51.93 -0.34 0.92 16 49 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -39.23 395.93 -8.37 -47.61 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.28 Total: 1.01 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.67 Total: 7.98 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.33 Total: -45.89 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.04 Total: -33.68 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.23 -8.37 -47.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270413734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.679 kcal (2) G-P(sol) polarization free energy of solvation -39.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds